Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016851 Vanilla planifolia HOM05D005655 ORTHO05D007386 8.5e-50 199.9 92 100.0
HPP92_027831 Vanilla planifolia HOM05D005655 ORTHO05D007386 1.1e-17 93.2 71 66.2
ATR0564G440 Amborella trichopoda HOM05D005655 ORTHO05D007386 2.3e-10 68.9 55 54.5
vmacro21200 Vaccinium macrocarpon HOM05D005655 ORTHO05D007386 5.0e-10 67.8 76 48.7
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 5.0e-10 67.8 56 55.4
Migut.N02937 Erythranthe guttata HOM05D005655 ORTHO05D007386 1.1e-09 66.6 48 60.4
MD05G1036800 Malus domestica HOM05D005655 ORTHO05D007386 1.1e-09 66.6 72 47.2
CSS0031675 Camellia sinensis var. sinensis HOM05D005655 ORTHO05D007386 1.9e-09 65.9 76 47.4
CSS0015534 Camellia sinensis var. sinensis HOM05D005655 ORTHO05D007386 3.3e-09 65.1 76 47.4
Nn5g28881 Nelumbo nucifera HOM05D005655 ORTHO05D007386 3.3e-09 65.1 48 58.3
Prupe.8G045000 Prunus persica HOM05D005655 ORTHO05D007386 3.3e-09 65.1 61 50.8
Eucgr.F02671 Eucalyptus grandis HOM05D005655 ORTHO05D007386 4.3e-09 64.7 51 51.0
Manes.02G186000 Manihot esculenta HOM05D005655 ORTHO05D007386 4.3e-09 64.7 40 67.5
Rhsim06G0093900 Rhododendron simsii HOM05D005655 ORTHO05D007386 4.3e-09 64.7 40 67.5
Eucgr.F00074 Eucalyptus grandis HOM05D005655 ORTHO05D007386 5.6e-09 64.3 51 51.0
Eucgr.J00222 Eucalyptus grandis HOM05D005655 ORTHO05D007386 5.6e-09 64.3 51 51.0
Eucgr.L00427 Eucalyptus grandis HOM05D005655 ORTHO05D007386 5.6e-09 64.3 51 51.0
MBI05_g00396_MAGBIO Magnolia biondii HOM05D001233 ORTHO05D001233 5.6e-09 64.3 75 44.0
FvH4_2g12780 Fragaria vesca HOM05D005655 ORTHO05D007386 7.3e-09 63.9 38 71.1
FAN15G2448 Fragaria x ananassa HOM05D005655 ORTHO05D007386 7.3e-09 63.9 38 71.1
SalBow6G4612 Salvia bowleyana HOM05D005655 ORTHO05D007386 7.3e-09 63.9 42 61.9
SGA_v2.0_scaffold371G50147 Striga asiatica HOM05D005655 ORTHO05D007386 7.3e-09 63.9 40 65.0
unitig_21.g20592 Utricularia gibba HOM05D005655 ORTHO05D007386 7.3e-09 63.9 40 70.0
MSTRG.22119 Avicennia marina HOM05D005655 ORTHO05D007386 9.5e-09 63.5 40 65.0
Dinv41018 Davidia involucrata HOM05D005655 ORTHO05D007386 9.5e-09 63.5 40 65.0
Os03g0381100 Oryza sativa ssp. japonica HOM05D005655 ORTHO05D007386 9.5e-09 63.5 76 47.4
Atru.chr13.1965 Acer truncatum HOM05D005655 ORTHO05D007386 1.2e-08 63.2 40 62.5
Solyc04g072140.4 Solanum lycopersicum HOM05D005655 ORTHO05D007386 1.2e-08 63.2 65 52.3
Sopen04g028310 Solanum pennellii HOM05D005655 ORTHO05D007386 1.2e-08 63.2 65 52.3
TAR625G0054 Trochodendron aralioides HOM05D005655 ORTHO05D007386 1.2e-08 63.2 40 65.0
Actinidia17755 Actinidia chinensis HOM05D005655 ORTHO05D007386 1.6e-08 62.8 79 48.1
Ah.02g115760 Amaranthus hybridus HOM05D005655 ORTHO05D007386 1.6e-08 62.8 61 49.2
Aqoxy5G02015 Aquilegia oxysepala HOM05D005655 ORTHO05D007386 1.6e-08 62.8 76 46.1
ClCG08G007170 Citrullus lanatus HOM05D005655 ORTHO05D007386 1.6e-08 62.8 46 58.7
Ciclev10001190m.g Citrus clementina HOM05D005655 ORTHO05D007386 1.6e-08 62.8 37 67.6
RcHm_v2.0_Chr6g0273621 Rosa chinensis HOM05D005655 ORTHO05D007386 1.6e-08 62.8 38 68.4
PGSC0003DMG400031154 Solanum tuberosum HOM05D005655 ORTHO05D007386 2.1e-08 62.4 64 53.1
MELO3C019957.2 Cucumis melo HOM05D005655 ORTHO05D007386 2.8e-08 62.0 46 58.7
PGR042G2919 Punica granatum HOM05D005655 ORTHO05D007386 3.6e-08 61.6 39 64.1
TWI74G0660 Tripterygium wilfordii HOM05D005655 ORTHO05D007386 3.6e-08 61.6 54 51.9
GSVIVG01013676001 Vitis vinifera HOM05D005655 ORTHO05D007386 3.6e-08 61.6 40 65.0
AUR62034929 Chenopodium quinoa HOM05D005655 ORTHO05D007386 4.7e-08 61.2 40 65.0
Cc10_g06370 Coffea canephora HOM05D005655 ORTHO05D007386 6.1e-08 60.8 39 69.2
CsaV3_6G004840 Cucumis sativus L. HOM05D005655 ORTHO05D007386 6.1e-08 60.8 38 68.4
Cpa.g.sc26.127 Carica papaya HOM05D005655 ORTHO05D007386 8.0e-08 60.5 44 61.4
Lj7C387T6 Lonicera japonica HOM05D005655 ORTHO05D007386 8.0e-08 60.5 39 64.1
Mapoly0139s0011 Marchantia polymorpha HOM05D005655 ORTHO05D007386 8.0e-08 60.5 39 66.7
Hund26667 Selenicereus undatus HOM05D005655 ORTHO05D007386 8.0e-08 60.5 50 50.0
CAN.G564.32 Capsicum annuum HOM05D005655 ORTHO05D007386 1.4e-07 59.7 70 48.6
AUR62022311 Chenopodium quinoa HOM05D005655 ORTHO05D007386 1.4e-07 59.7 40 62.5
Lalb_Chr02g0141641 Lupinus albus HOM05D005655 ORTHO05D007386 1.4e-07 59.7 41 63.4
Peaxi162Scf00226g00219 Petunia axillaris HOM05D005655 ORTHO05D007386 1.4e-07 59.7 61 54.1
Gohir.A02G061800 Gossypium hirsutum HOM05D005655 ORTHO05D007386 1.8e-07 59.3 69 49.3
Gohir.D02G067400 Gossypium hirsutum HOM05D005655 ORTHO05D007386 1.8e-07 59.3 69 49.3
Gorai.005G076300 Gossypium raimondii HOM05D005655 ORTHO05D007386 1.8e-07 59.3 69 49.3
PSO170G2558 Papaver somniferum HOM05D005655 ORTHO05D007386 1.8e-07 59.3 50 52.0
Sc13g0008190 Simmondsia chinensis HOM05D005655 ORTHO05D007386 1.8e-07 59.3 43 58.1
arahy.Tifrunner.gnm1.ann1.A75B0U Arachis hypogaea HOM05D005655 ORTHO05D007386 3.0e-07 58.5 42 59.5
Nitab4.5_0000433g0050 Nicotiana tabacum HOM05D005655 ORTHO05D007386 3.0e-07 58.5 39 66.7
Nitab4.5_0001000g0130 Nicotiana tabacum HOM05D005655 ORTHO05D007386 3.0e-07 58.5 61 52.5
SHI09123 Sapria himalayana HOM05D005655 ORTHO05D007386 3.0e-07 58.5 40 60.0
CiPaw.15G011200 Carya illinoinensis HOM05D005655 ORTHO05D007386 5.2e-07 57.8 37 70.3
PSO210G7095 Papaver somniferum HOM05D005655 ORTHO05D007386 5.2e-07 57.8 48 52.1
Ca_10644_v3 Cicer arietinum L. HOM05D005655 ORTHO05D007386 6.8e-07 57.4 44 56.8
Duzib093G0465 Durio zibethinus HOM05D005655 ORTHO05D007386 6.8e-07 57.4 69 46.4
Potri.002G061650 Populus trichocarpa HOM05D005655 ORTHO05D007386 6.8e-07 57.4 40 60.0
Cfa018255 Carpinus fangiana HOM05D005655 ORTHO05D007386 8.9e-07 57.0 36 69.4
Haze_17840 Corylus avellana HOM05D005655 ORTHO05D007386 8.9e-07 57.0 36 69.4
DCAR_013167 Daucus carota HOM05D005655 ORTHO05D007386 8.9e-07 57.0 40 62.5
Pp3c9_3740 Physcomitrium patens HOM05D005655 ORTHO05D007386 8.9e-07 57.0 42 59.5
arahy.Tifrunner.gnm1.ann1.3U6NKV Arachis hypogaea HOM05D005655 ORTHO05D007386 1.2e-06 56.6 41 58.5
Glyma.10G220000 Glycine max HOM05D005655 ORTHO05D007386 1.2e-06 56.6 41 63.4
THA.LOC104816107 Tarenaya hassleriana HOM05D005655 ORTHO05D007386 1.2e-06 56.6 38 60.5
HanXRQChr04g0115611 Helianthus annuus HOM05D005655 ORTHO05D007386 1.5e-06 56.2 32 71.9
Phvul.007G085300 Phaseolus vulgaris HOM05D005655 ORTHO05D007386 1.5e-06 56.2 36 69.4
QL02p036335 Quercus lobata HOM05D005655 ORTHO05D007386 1.5e-06 56.2 41 58.5
Sabra02G0049900 Salix brachista HOM05D005655 ORTHO05D007386 1.5e-06 56.2 40 57.5
Thecc.10G182000 Theobroma cacao HOM05D005655 ORTHO05D007386 1.5e-06 56.2 40 62.5
EL10Ac1g01637 Beta vulgaris HOM05D005655 ORTHO05D007386 2.0e-06 55.8 47 55.3
CARHR033670 Cardamine hirsuta HOM05D005655 ORTHO05D007386 2.0e-06 55.8 40 57.5
Haze_17834 Corylus avellana HOM05D005655 ORTHO05D007386 2.0e-06 55.8 36 66.7
Lj5g0012902 Lotus japonicus HOM05D005655 ORTHO05D007386 2.0e-06 55.8 42 59.5
Peaxi162Scf00226g00318 Petunia axillaris HOM05D003028 ORTHO05D003465 2.0e-06 55.8 46 56.5
Sed0016594 Sechium edule HOM05D005655 ORTHO05D007386 2.0e-06 55.8 41 58.5
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 2.6e-06 55.5 54 50.0
VMungo0720G1747 Vigna mungo HOM05D005655 ORTHO05D007386 2.6e-06 55.5 36 69.4
CANSAT25G2324 Cannabis sativa HOM05D005655 ORTHO05D007386 3.4e-06 55.1 72 41.7
Eucgr.I00104 Eucalyptus grandis HOM05D005655 ORTHO05D007386 3.4e-06 55.1 44 52.3
Glyma.20G171700 Glycine max HOM05D005655 ORTHO05D007386 4.4e-06 54.7 35 71.4
Hma1.2p1_0358F.1_g134900 Hydrangea macrophylla HOM05D005655 ORTHO05D007386 4.4e-06 54.7 40 52.5
Hma1.2p1_0358F.1_g134910 Hydrangea macrophylla HOM05D005655 ORTHO05D007386 4.4e-06 54.7 40 52.5
MCO10G057 Micromonas commoda HOM05D005655 ORTHO05D007386 5.7e-06 54.3 49 57.1
COL.COLO4_13720 Corchorus olitorius HOM05D005655 ORTHO05D007386 7.5e-06 53.9 41 58.5


User provided reference genes

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