Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.4e-48 196.1 104 100.0
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 6.0e-28 127.5 71 87.3
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 6.0e-28 127.5 71 88.7
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 3.9e-27 124.8 70 87.1
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 3.9e-27 124.8 70 87.1
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 3.9e-27 124.8 74 83.8
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 3.9e-27 124.8 71 85.9
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 3.9e-27 124.8 71 87.3
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 3.9e-27 124.8 71 87.3
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 5.1e-27 124.4 71 84.5
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 5.1e-27 124.4 71 85.9
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 1.1e-26 123.2 71 84.5
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 1.5e-26 122.9 74 83.8
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 1.9e-26 122.5 71 83.1
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 1.9e-26 122.5 71 83.1
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 2.5e-26 122.1 71 84.5
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 2.5e-26 122.1 74 81.1
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 2.5e-26 122.1 71 84.5
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 2.5e-26 122.1 71 84.5
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 2.5e-26 122.1 71 84.5
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 3.3e-26 121.7 74 79.7
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 3.3e-26 121.7 71 84.5
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 7.4e-26 120.6 71 83.1
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 7.4e-26 120.6 71 81.7
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 9.6e-26 120.2 71 81.7
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 9.6e-26 120.2 72 81.9
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 1.3e-25 119.8 71 84.5
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 1.3e-25 119.8 74 79.7
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.6e-25 119.4 71 83.1
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 2.1e-25 119.0 74 81.1
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 2.1e-25 119.0 74 79.7
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 2.1e-25 119.0 74 81.1
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 2.8e-25 118.6 70 81.4
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 3.7e-25 118.2 74 79.7
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 3.7e-25 118.2 74 79.7
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 3.7e-25 118.2 71 81.7
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 3.7e-25 118.2 74 79.7
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 3.7e-25 118.2 74 79.7
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 3.7e-25 118.2 71 81.7
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 3.7e-25 118.2 70 80.0
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 4.8e-25 117.9 70 80.0
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 4.8e-25 117.9 74 79.7
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 6.2e-25 117.5 76 78.9
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 6.2e-25 117.5 76 78.9
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 6.2e-25 117.5 71 81.7
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 6.2e-25 117.5 71 80.3
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 6.2e-25 117.5 71 81.7
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 6.2e-25 117.5 69 82.6
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 6.2e-25 117.5 74 77.0
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 8.2e-25 117.1 74 78.4
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 8.2e-25 117.1 74 78.4
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 1.1e-24 116.7 72 80.6
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 1.1e-24 116.7 74 77.0
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 1.1e-24 116.7 74 77.0
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 1.1e-24 116.7 71 80.3
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 1.1e-24 116.7 71 80.3
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 1.4e-24 116.3 68 82.4
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 1.4e-24 116.3 74 79.7
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 1.4e-24 116.3 71 80.3
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 1.4e-24 116.3 74 78.4
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 1.4e-24 116.3 69 81.2
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 1.4e-24 116.3 74 77.0
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 1.8e-24 115.9 72 79.2
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 1.8e-24 115.9 72 79.2
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 1.8e-24 115.9 72 79.2
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 1.8e-24 115.9 72 79.2
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 1.8e-24 115.9 71 80.3
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.8e-24 115.9 71 80.3
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.8e-24 115.9 71 80.3
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.8e-24 115.9 71 80.3
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 1.8e-24 115.9 74 77.0
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 2.4e-24 115.5 71 77.5
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.4e-24 115.5 74 78.4
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.4e-24 115.5 74 78.4
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 2.4e-24 115.5 74 77.0
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 3.1e-24 115.2 83 69.9
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 3.1e-24 115.2 69 81.2
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 3.1e-24 115.2 83 69.9
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 3.1e-24 115.2 71 78.9
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 3.1e-24 115.2 71 80.3
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 3.1e-24 115.2 74 77.0
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 3.1e-24 115.2 74 77.0
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 4.1e-24 114.8 68 80.9
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 4.1e-24 114.8 69 79.7
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 5.3e-24 114.4 73 75.3
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 5.3e-24 114.4 74 74.3
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 5.3e-24 114.4 71 78.9
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 5.3e-24 114.4 74 74.3
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 6.9e-24 114.0 69 79.7
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 6.9e-24 114.0 74 77.0
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 6.9e-24 114.0 71 76.1
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 6.9e-24 114.0 70 77.1
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 1.2e-23 113.2 72 76.4
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 1.2e-23 113.2 72 76.4
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 1.2e-23 113.2 74 77.0
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 1.2e-23 113.2 74 75.7
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 2.0e-23 112.5 69 79.7
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 2.6e-23 112.1 69 76.8
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 2.6e-23 112.1 68 80.9
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 3.4e-23 111.7 69 78.3
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 7.6e-23 110.5 69 75.4
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.0e-22 110.2 69 75.4
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 2.9e-22 108.6 71 74.6
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 2.9e-22 108.6 74 73.0
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 6.5e-22 107.5 74 71.6
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.9e-21 105.9 69 72.5
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 2.5e-21 105.5 70 70.0
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 3.5e-20 101.7 106 55.7
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 7.9e-20 100.5 71 66.2
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 5.1e-19 97.8 71 66.2
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 1.5e-18 96.3 121 48.8
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.9e-18 95.9 69 63.8
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 5.7e-18 94.4 66 66.7
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 1.4e-16 89.7 56 76.8
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 4.1e-16 88.2 60 71.7
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 5.3e-16 87.8 57 73.7
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 5.3e-16 87.8 57 73.7
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 6.9e-16 87.4 74 64.9
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 3.4e-15 85.1 70 57.1
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 1.9e-13 79.3 59 66.1
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 1.2e-12 76.6 45 82.2
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 7.9e-12 73.9 73 53.4
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 2.0e-10 69.3 54 57.4
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.3e-09 66.6 64 51.6
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 1.8e-08 62.8 37 81.1
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 1.5e-07 59.7 62 54.8


User provided reference genes

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