Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 3.4e-239 831.2 416 100.0
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 2.5e-117 426.4 352 63.9
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 4.3e-117 425.6 356 61.8
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 4.3e-117 425.6 393 57.3
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 9.6e-117 424.5 366 60.9
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 1.6e-116 423.7 368 61.1
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 2.1e-116 423.3 395 57.5
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 2.8e-116 422.9 373 59.2
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 3.6e-116 422.5 358 62.0
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 1.4e-115 420.6 357 61.6
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 1.4e-115 420.6 358 62.0
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 1.8e-115 420.2 377 57.6
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 3.1e-115 419.5 357 61.6
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 3.1e-115 419.5 365 59.7
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 6.9e-115 418.3 357 61.1
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.2e-114 417.5 383 59.3
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.2e-114 417.5 366 61.5
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 2.0e-114 416.8 358 62.0
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 2.0e-114 416.8 396 57.1
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 3.4e-114 416.0 365 59.7
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 3.4e-114 416.0 379 59.6
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 3.4e-114 416.0 405 56.3
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 3.4e-114 416.0 360 60.6
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 3.4e-114 416.0 396 56.6
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 5.8e-114 415.2 401 56.6
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 5.8e-114 415.2 399 57.4
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 7.6e-114 414.8 379 57.8
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 7.6e-114 414.8 377 57.6
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 7.6e-114 414.8 401 57.1
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 9.9e-114 414.5 379 57.5
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 9.9e-114 414.5 387 57.6
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 9.9e-114 414.5 369 59.9
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 1.3e-113 414.1 370 57.8
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 1.3e-113 414.1 389 57.6
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 2.9e-113 412.9 372 58.3
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 4.9e-113 412.1 380 57.6
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 4.9e-113 412.1 413 56.4
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 8.4e-113 411.4 380 57.4
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 8.4e-113 411.4 411 54.7
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 8.4e-113 411.4 387 57.6
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 8.4e-113 411.4 369 58.8
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 1.1e-112 411.0 377 56.5
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 1.9e-112 410.2 370 60.3
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 3.2e-112 409.5 364 59.6
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 5.4e-112 408.7 362 59.9
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.6e-111 407.1 347 61.1
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.7e-111 406.4 380 57.1
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 3.5e-111 406.0 380 56.8
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 3.5e-111 406.0 392 57.4
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 4.6e-111 405.6 349 61.0
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 4.6e-111 405.6 368 58.7
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 6.0e-111 405.2 361 59.8
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 7.8e-111 404.8 393 55.7
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 7.8e-111 404.8 354 59.6
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 1.0e-110 404.4 366 59.0
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.3e-110 404.1 394 55.1
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 1.3e-110 404.1 378 56.9
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 3.9e-110 402.5 386 56.5
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 5.1e-110 402.1 374 59.1
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 5.1e-110 402.1 349 60.7
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 1.9e-109 400.2 339 62.2
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 3.3e-109 399.4 344 61.0
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 9.6e-109 397.9 365 59.2
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 9.6e-109 397.9 414 54.1
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 9.6e-109 397.9 351 59.5
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 1.3e-108 397.5 308 65.3
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 2.8e-108 396.4 356 57.9
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 3.6e-108 396.0 345 60.9
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 3.6e-108 396.0 345 60.9
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 2.4e-107 393.3 349 57.6
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 2.4e-107 393.3 345 60.0
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 3.1e-107 392.9 362 57.2
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 4.0e-107 392.5 335 61.5
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 4.0e-107 392.5 305 66.6
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 5.3e-107 392.1 366 56.8
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 9.0e-107 391.3 313 64.2
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 2.0e-106 390.2 345 60.3
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 2.0e-106 390.2 341 59.2
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 3.4e-106 389.4 446 51.1
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 9.9e-106 387.9 345 60.6
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 6.4e-105 385.2 345 60.9
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 2.4e-104 383.3 360 56.7
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 4.2e-104 382.5 314 62.7
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 1.2e-103 380.9 377 54.4
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 3.5e-103 379.4 335 60.6
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 1.8e-102 377.1 405 51.4
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 1.5e-101 374.0 291 65.6
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.1e-100 370.2 411 52.3
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 1.4e-99 367.5 273 66.3
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 6.9e-99 365.2 317 60.6
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 6.9e-99 365.2 375 53.1
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.7e-97 360.5 327 58.1
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.6e-95 354.0 331 56.8
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 3.5e-95 352.8 272 64.3
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 1.9e-93 347.1 345 55.1
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 1.3e-92 344.4 345 54.8
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 4.6e-87 325.9 357 51.5
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 8.7e-86 321.6 391 48.3
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 5.7e-85 318.9 372 50.0
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.3e-84 317.8 375 48.8
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 1.1e-83 314.7 263 63.9
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 6.9e-83 312.0 269 62.5
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.2e-82 311.2 307 55.0
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 2.6e-82 310.1 360 46.9
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 5.9e-82 308.9 378 47.1
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 3.2e-80 303.1 263 58.6
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 1.2e-79 301.2 437 40.7
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 1.2e-71 274.6 324 46.6
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 4.4e-69 266.2 351 45.0
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 4.8e-68 262.7 205 63.9
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 3.4e-66 256.5 306 49.3
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 5.9e-58 229.2 185 63.8
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 1.0e-57 228.4 344 40.1
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 2.1e-55 220.7 225 54.7
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.0e-54 218.4 238 51.3
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.2e-53 214.9 182 59.9
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 4.5e-50 203.0 160 61.9
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 2.7e-47 193.7 285 43.5
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 2.5e-40 170.6 467 30.6
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 2.9e-28 130.6 94 66.0
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 5.9e-26 122.9 176 44.3
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 1.4e-19 101.7 64 75.0
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.1e-15 85.9 197 33.5
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.1e-15 85.9 107 46.7
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.9e-14 82.4 97 47.4
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 2.3e-09 67.8 114 40.4
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 7.3e-08 62.8 128 39.1
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 2.1e-07 61.2 60 51.7


User provided reference genes

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