Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.4e-195 685.3 339 100.0
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 5.0e-140 501.5 305 85.2
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.6e-106 389.0 272 75.4
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 1.2e-104 384.0 306 65.0
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 4.2e-102 375.6 307 63.8
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 3.9e-100 369.0 307 62.2
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.1e-99 367.5 307 62.2
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 3.8e-95 352.4 263 67.7
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 6.4e-95 351.7 306 60.1
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 1.4e-94 350.5 307 61.2
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 3.2e-94 349.4 307 60.6
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 1.2e-93 347.4 307 60.3
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 1.2e-93 347.4 307 58.3
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.6e-93 347.1 307 60.6
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 2.7e-93 346.3 308 59.4
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.5e-93 345.9 295 61.7
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 4.6e-93 345.5 306 59.8
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 7.8e-93 344.7 306 58.2
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 7.8e-93 344.7 307 58.6
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 2.3e-92 343.2 308 60.1
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 5.1e-92 342.0 308 57.1
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 6.6e-92 341.7 308 57.5
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 6.6e-92 341.7 306 57.5
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 6.6e-92 341.7 306 57.5
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 6.6e-92 341.7 306 57.5
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 1.5e-91 340.5 307 58.6
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 3.3e-91 339.3 306 57.2
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 4.3e-91 339.0 306 59.5
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 4.3e-91 339.0 307 58.3
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 5.6e-91 338.6 307 58.6
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 5.6e-91 338.6 307 58.3
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 5.6e-91 338.6 307 58.6
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 7.3e-91 338.2 306 59.5
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.6e-90 337.0 308 58.8
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 1.6e-90 337.0 310 58.1
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 2.8e-90 336.3 307 58.0
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 2.8e-90 336.3 306 58.8
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.8e-90 336.3 306 58.8
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 2.8e-90 336.3 305 59.3
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 3.6e-90 335.9 307 57.0
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 1.1e-89 334.3 307 57.7
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 1.4e-89 334.0 307 58.0
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.4e-89 334.0 307 57.7
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 1.4e-89 334.0 307 58.3
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 1.4e-89 334.0 307 58.0
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 1.8e-89 333.6 322 56.2
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 3.1e-89 332.8 307 55.4
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 3.1e-89 332.8 307 59.0
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 5.3e-89 332.0 305 58.7
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 6.9e-89 331.6 300 59.7
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 6.9e-89 331.6 307 58.0
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 6.9e-89 331.6 307 58.6
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 9.0e-89 331.3 308 57.1
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 9.0e-89 331.3 305 57.0
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 1.2e-88 330.9 300 59.3
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 2.0e-88 330.1 307 57.7
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 2.6e-88 329.7 307 56.7
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 2.6e-88 329.7 307 57.0
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 2.6e-88 329.7 306 57.5
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 3.4e-88 329.3 305 56.7
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 3.4e-88 329.3 300 59.0
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 3.4e-88 329.3 305 57.4
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 7.6e-88 328.2 306 56.5
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 9.9e-88 327.8 307 57.3
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 2.2e-87 326.6 306 56.9
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 2.9e-87 326.2 307 56.4
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 2.9e-87 326.2 315 56.8
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 2.9e-87 326.2 315 56.8
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 2.9e-87 326.2 303 57.1
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 3.8e-87 325.9 308 56.8
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 4.9e-87 325.5 307 56.4
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 4.9e-87 325.5 308 56.8
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 4.9e-87 325.5 308 56.8
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 4.9e-87 325.5 306 57.5
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 6.4e-87 325.1 308 56.8
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 8.4e-87 324.7 307 57.7
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 8.4e-87 324.7 263 64.3
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 2.4e-86 323.2 307 56.7
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 2.4e-86 323.2 307 57.0
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 2.4e-86 323.2 307 57.0
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 2.4e-86 323.2 315 56.8
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 3.2e-86 322.8 313 55.6
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 3.2e-86 322.8 296 57.4
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 7.1e-86 321.6 315 55.9
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 9.3e-86 321.2 299 59.9
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 1.6e-85 320.5 315 55.9
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 2.1e-85 320.1 313 55.6
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 2.1e-85 320.1 314 55.4
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 2.1e-85 320.1 341 52.8
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.5e-85 319.3 307 56.4
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 3.5e-85 319.3 315 55.6
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 3.5e-85 319.3 348 51.7
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 6.0e-85 318.5 307 57.0
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 7.9e-85 318.2 334 53.3
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 7.9e-85 318.2 314 55.1
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 1.0e-84 317.8 314 55.4
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 1.3e-84 317.4 307 55.0
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 1.3e-84 317.4 314 55.1
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 6.7e-84 315.1 309 56.0
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 8.7e-84 314.7 318 55.0
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 1.1e-83 314.3 330 53.3
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 1.9e-83 313.5 330 54.2
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 1.9e-83 313.5 299 57.9
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 7.4e-83 311.6 308 54.9
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 7.4e-83 311.6 309 56.0
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 1.3e-82 310.8 309 55.7
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 3.7e-82 309.3 314 53.8
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 4.8e-82 308.9 319 54.9
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 8.1e-82 308.1 313 53.7
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 8.1e-82 308.1 306 54.2
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 1.1e-81 307.8 317 53.3
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.4e-81 306.6 318 53.8
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 6.9e-81 305.1 308 53.6
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 2.0e-80 303.5 305 54.4
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.0e-80 303.5 309 54.4
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 5.8e-80 302.0 308 52.6
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.4e-78 297.4 305 53.1
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 3.2e-78 296.2 281 56.2
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 7.9e-77 291.6 306 53.9
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 7.9e-77 291.6 295 56.3
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 1.3e-76 290.8 308 52.6
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.9e-75 287.0 307 52.8
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.3e-74 284.3 307 52.4
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 6.2e-74 282.0 161 85.7
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 1.1e-73 281.2 308 49.7
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 3.1e-73 279.6 308 52.3
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 5.8e-72 275.4 311 49.8
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.0e-71 274.6 307 51.8
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 6.3e-66 255.4 127 99.2
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 4.1e-65 252.7 307 44.3
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 7.2e-62 241.9 236 57.2
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 6.1e-61 238.8 118 94.9
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 8.8e-60 235.0 303 42.2
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.0e-55 221.5 428 36.7
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 1.6e-53 214.2 318 39.9
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 1.1e-49 201.4 238 47.1
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.3e-43 179.9 134 69.4
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.3e-39 167.9 153 60.8
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 2.9e-39 166.8 140 62.9
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 6.5e-39 165.6 140 62.9
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.9e-38 164.1 146 63.7
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.5e-38 163.7 124 70.2
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 2.3e-36 157.1 314 35.4
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.1e-33 146.7 162 48.1
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 1.2e-27 128.3 217 40.1
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 6.3e-26 122.5 146 47.9
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 1.0e-23 115.2 73 78.1
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 5.5e-22 109.4 345 29.9
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 1.7e-18 97.8 103 53.4
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 4.9e-18 96.3 105 51.4
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 5.6e-14 82.8 98 44.9
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 9.5e-14 82.0 89 47.2
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 9.5e-14 82.0 89 47.2
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 8.0e-13 79.0 104 41.3
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 3.1e-12 77.0 57 59.6
HPP92_013182 Vanilla planifolia HOM05D000069 ORTHO05D000060 4.1e-09 66.6 34 91.2
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 5.0e-07 59.7 138 32.6
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 8.6e-07 58.9 67 43.3
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 1.9e-06 57.8 67 46.3


User provided reference genes

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