Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 0.0e+00 1123.6 557 100.0
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 6.0e-183 644.8 610 58.9
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 7.9e-183 644.4 455 76.0
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 4.3e-181 638.6 611 57.0
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.1e-176 624.0 606 55.9
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 9.3e-176 620.9 615 56.1
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 7.9e-175 617.8 607 55.7
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 3.0e-174 615.9 608 56.4
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 1.5e-173 613.6 607 54.7
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 1.5e-173 613.6 607 55.5
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 1.9e-173 613.2 608 56.4
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 7.4e-173 611.3 606 56.3
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 2.1e-172 609.8 608 54.3
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 4.8e-172 608.6 601 56.1
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 8.2e-172 607.8 607 54.4
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 1.1e-171 607.4 607 54.2
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 1.8e-171 606.7 607 54.7
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 2.4e-171 606.3 608 54.8
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 2.4e-171 606.3 609 54.4
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 3.1e-171 605.9 607 55.2
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 9.0e-171 604.4 609 54.8
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 9.0e-171 604.4 607 55.0
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 1.2e-170 604.0 609 54.4
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 1.5e-170 603.6 607 55.0
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 2.9e-169 599.4 608 53.8
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 3.8e-169 599.0 608 54.4
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 8.4e-169 597.8 607 53.9
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.9e-168 596.7 610 53.9
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 1.9e-168 596.7 611 53.5
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 2.5e-168 596.3 607 53.7
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 5.5e-168 595.1 623 53.3
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 7.2e-168 594.7 608 53.9
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 1.2e-167 594.0 610 54.1
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 2.1e-167 593.2 608 53.6
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 2.7e-167 592.8 607 54.4
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 7.9e-167 591.3 620 52.4
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 1.3e-166 590.5 615 52.7
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 2.3e-166 589.7 620 52.3
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 2.3e-166 589.7 620 52.3
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 2.3e-166 589.7 609 53.5
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 2.3e-166 589.7 607 54.4
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 3.0e-166 589.3 608 53.6
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 3.9e-166 589.0 621 52.2
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 3.9e-166 589.0 560 55.9
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 3.9e-166 589.0 608 54.9
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 5.1e-166 588.6 610 53.4
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 5.1e-166 588.6 610 53.4
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 5.1e-166 588.6 610 53.4
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 8.7e-166 587.8 621 52.2
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 1.9e-165 586.6 608 53.5
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 3.3e-165 585.9 609 53.4
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 3.3e-165 585.9 614 52.1
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 7.4e-165 584.7 626 52.1
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 1.3e-164 583.9 608 53.0
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 2.2e-164 583.2 620 51.9
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 8.2e-164 581.3 613 52.4
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 8.2e-164 581.3 611 53.2
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 1.1e-163 580.9 609 53.4
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 1.4e-163 580.5 608 53.8
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 5.3e-163 578.6 618 52.1
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 2.6e-162 576.2 618 52.1
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 3.4e-162 575.9 621 51.9
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 3.4e-162 575.9 630 51.3
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 4.5e-162 575.5 609 52.4
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 4.5e-162 575.5 621 51.9
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 7.7e-162 574.7 619 52.8
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 2.2e-161 573.2 608 52.3
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 2.9e-161 572.8 618 51.0
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 3.8e-161 572.4 610 51.3
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 5.0e-161 572.0 618 51.9
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 5.0e-161 572.0 618 51.9
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 8.5e-161 571.2 618 51.6
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 1.1e-160 570.9 618 51.1
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 1.1e-160 570.9 608 52.6
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.9e-160 570.1 619 50.7
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 2.5e-160 569.7 608 51.8
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.2e-160 569.3 592 53.4
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 4.2e-160 568.9 609 51.6
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 9.4e-160 567.8 587 53.7
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 2.7e-159 566.2 618 50.5
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 1.0e-158 564.3 635 49.6
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 1.0e-158 564.3 622 51.3
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.4e-158 563.9 592 53.0
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 1.8e-158 563.5 609 51.7
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 6.7e-158 561.6 594 53.2
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 2.0e-157 560.1 586 53.2
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 4.3e-157 558.9 565 55.0
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 1.3e-156 557.4 620 50.5
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 3.7e-156 555.8 624 51.4
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.4e-155 553.9 590 52.7
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 9.1e-155 551.2 635 51.0
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 9.1e-155 551.2 599 52.6
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 1.5e-154 550.4 686 47.8
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.3e-153 547.4 459 63.8
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 2.2e-153 546.6 605 51.1
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 6.5e-153 545.0 607 50.1
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 8.5e-153 544.7 745 44.6
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 1.9e-152 543.5 618 49.5
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 3.2e-152 542.7 616 48.9
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 9.4e-152 541.2 617 49.8
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 1.8e-150 537.0 450 62.0
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 8.8e-150 534.6 605 50.4
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 5.7e-149 531.9 624 49.8
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 9.7e-149 531.2 526 55.7
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.7e-148 530.4 454 61.0
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 2.8e-148 529.6 615 48.9
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 2.4e-147 526.6 604 50.3
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 3.1e-147 526.2 607 48.9
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 4.1e-147 525.8 595 51.1
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 1.5e-144 517.3 530 53.4
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.6e-143 513.8 607 49.3
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 9.7e-141 504.6 607 48.4
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.2e-140 503.4 465 57.4
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.4e-139 500.0 305 85.2
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 7.0e-139 498.4 464 56.5
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 5.0e-137 492.3 584 47.9
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.2e-133 481.1 528 50.8
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.8e-129 466.1 258 91.1
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 1.6e-127 460.7 620 44.2
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 8.0e-127 458.4 623 43.7
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 2.8e-124 449.9 501 52.5
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.8e-124 449.9 332 73.5
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 4.4e-117 426.0 480 49.4
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 3.7e-116 422.9 397 57.7
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 3.9e-113 412.9 802 36.5
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 3.9e-113 412.9 618 42.1
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 2.3e-110 403.7 393 56.0
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 1.7e-108 397.5 600 39.2
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.2e-106 391.3 420 51.2
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 6.6e-105 385.6 396 55.1
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 6.6e-97 359.0 330 57.9
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 5.6e-96 355.9 329 61.1
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 1.8e-94 350.9 600 36.3
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 2.2e-92 344.0 624 35.9
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.2e-90 338.2 300 60.3
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 1.3e-81 308.1 431 43.2
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.3e-81 308.1 303 56.4
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 6.9e-70 269.2 334 48.2
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 5.5e-67 259.6 180 72.8
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 9.6e-64 248.8 190 66.8
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.1e-63 247.7 199 65.8
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 8.1e-63 245.7 799 28.5
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 4.0e-62 243.4 183 72.7
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.8e-54 218.0 253 48.6
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.3e-48 197.2 506 32.2
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 3.9e-41 173.7 144 63.9
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 6.7e-41 172.9 183 50.8
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 1.5e-40 171.8 185 50.8
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 4.4e-40 170.2 116 76.7
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 4.8e-39 166.8 142 59.2
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 6.3e-39 166.4 184 50.0
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 1.1e-30 139.0 169 49.1
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.1e-30 137.5 120 58.3
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 1.6e-29 135.2 85 76.5
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 1.1e-27 129.0 115 56.5
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.6e-26 125.2 191 39.8
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 3.6e-26 124.0 120 55.8
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 6.1e-26 123.2 120 55.0
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 3.3e-24 117.5 117 52.1
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 3.3e-24 117.5 84 65.5
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 7.5e-24 116.3 117 51.3
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 1.7e-23 115.2 66 77.3
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 4.1e-22 110.5 190 38.4
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 2.7e-21 107.8 73 75.3
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 2.7e-21 107.8 73 75.3
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.3e-20 105.5 73 71.2
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 1.3e-20 105.5 145 42.8
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 9.4e-19 99.4 162 40.1
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 9.4e-19 99.4 177 36.2
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 2.1e-18 98.2 72 63.9
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 8.0e-18 96.3 105 51.4
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.4e-17 95.5 177 35.0
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 2.0e-13 81.6 60 65.0
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 2.3e-12 78.2 57 57.9
HPP92_013182 Vanilla planifolia HOM05D000069 ORTHO05D000060 2.3e-09 68.2 34 94.1
Lsat_1_v5_gn_4_30320 Lactuca sativa HOM05D003829 ORTHO05D015515 4.0e-09 67.4 38 76.3
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 2.6e-08 64.7 40 70.0
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 1.7e-07 62.0 53 49.1
HPP92_012712 Vanilla planifolia HOM05D000069 ORTHO05D025995 6.3e-07 60.1 40 77.5
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 4.1e-06 57.4 54 55.6
TAR374G1547 Trochodendron aralioides HOM05D003829 ORTHO05D004943 5.4e-06 57.0 32 68.8


User provided reference genes

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