Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 2409.4 1194 100.0
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1535.0 1207 63.3
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1531.2 1191 62.6
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1504.2 1173 62.1
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1493.0 1196 61.1
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1486.5 1187 61.5
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1474.9 1176 61.6
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1469.5 1187 60.6
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1461.0 1186 59.9
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1459.5 1196 59.8
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1459.5 1191 59.5
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1457.2 1189 60.3
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1453.0 1168 61.0
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1449.5 1193 59.1
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1433.3 1189 59.5
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1431.8 1200 59.2
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1431.4 1189 58.9
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1429.5 1195 59.1
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1427.2 1176 59.6
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1426.8 1190 58.8
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1426.8 1192 59.1
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1424.5 1177 59.4
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1421.4 1199 59.1
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1421.4 1191 58.4
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1419.8 1190 59.1
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1417.9 1191 58.4
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1416.7 1193 59.3
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1415.2 1196 58.0
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1414.4 1197 57.9
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1412.5 1194 58.5
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1412.5 1199 59.5
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1412.5 1191 58.9
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1411.7 1192 59.4
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1411.7 1192 59.1
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1409.8 1193 59.1
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1409.8 1188 58.2
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1408.7 1192 59.4
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1407.9 1193 58.3
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1407.5 1191 57.9
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1406.7 1193 58.1
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1406.3 1193 57.7
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1406.0 1194 57.8
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1405.6 1194 57.5
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1405.6 1201 57.9
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1405.6 1201 57.9
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1404.4 1188 57.5
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1403.7 1190 58.2
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1402.1 1202 57.6
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1401.3 1194 58.2
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1400.2 1193 57.6
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1394.0 1195 57.6
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1392.9 1215 56.9
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1392.9 1193 57.3
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1392.5 1236 56.6
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1392.5 1188 57.8
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1390.9 1200 57.4
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1390.2 1226 56.1
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1389.8 1179 57.7
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1382.1 1203 56.6
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1381.7 1199 57.2
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1380.9 1206 56.8
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1379.4 1203 57.6
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1378.6 1188 57.1
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1373.2 1198 56.3
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1371.7 1173 57.1
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1371.3 1196 57.2
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1368.2 1161 57.4
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1365.1 1204 56.2
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1364.4 1195 56.2
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1360.5 1144 57.9
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1355.5 1201 57.0
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1349.7 1193 55.0
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1348.6 1268 53.9
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1346.3 1240 53.7
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1338.2 1141 57.6
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1335.9 1196 54.9
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1335.9 1204 55.1
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1333.9 1193 54.7
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1332.8 1191 55.1
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1332.4 1196 55.8
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1332.0 1191 54.9
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1328.9 1191 54.7
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1328.5 1193 55.0
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1326.6 1192 54.9
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1318.9 1258 52.9
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1317.4 1306 52.1
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1310.4 1192 54.8
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1302.0 1204 54.2
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1301.6 1192 54.4
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1300.8 1216 53.7
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1275.4 1239 51.7
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1253.8 1192 53.2
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1246.9 1283 51.0
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1243.0 1012 60.3
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1237.2 1014 59.9
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1158.3 1210 49.8
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1155.2 968 59.2
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1139.4 985 57.6
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1138.3 1187 48.5
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1114.8 1189 49.7
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1085.9 1156 47.4
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 4.1e-311 1071.6 1223 46.0
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 1.1e-301 1040.4 1201 47.5
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 3.3e-295 1018.8 1191 47.4
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 8.1e-286 987.6 1202 45.5
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 3.0e-272 942.6 830 56.4
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 2.4e-253 879.8 1121 43.1
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 8.2e-238 828.2 777 52.6
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 7.7e-236 821.6 853 51.2
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 8.8e-232 808.1 713 56.1
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 2.5e-226 790.0 1092 40.7
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 3.4e-223 779.6 709 55.4
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 3.5e-188 663.3 581 56.1
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 2.9e-182 643.7 1171 34.6
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 9.6e-178 628.6 492 61.4
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.1e-173 615.1 485 61.4
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 9.3e-173 612.1 553 56.1
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 3.5e-164 583.6 750 43.3
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 3.6e-140 503.8 413 63.0
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 1.8e-120 438.3 719 37.4
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 4.1e-120 437.2 401 55.6
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 5.2e-107 393.7 586 41.8
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 4.1e-88 330.9 259 59.5
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 3.2e-64 251.5 368 38.0
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 1.4e-56 226.1 280 43.9
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.9e-56 225.7 278 44.2
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 1.8e-51 209.1 203 55.2
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 2.0e-50 205.7 176 58.0
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 2.9e-49 201.8 282 41.8
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 3.4e-34 151.8 125 58.4
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 3.4e-34 151.8 141 52.5
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 3.6e-23 115.2 135 46.7
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 1.3e-20 106.7 72 62.5
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 9.1e-19 100.5 148 41.2
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 8.2e-12 77.4 63 61.9
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 8.2e-12 77.4 201 29.4
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 2.6e-10 72.4 128 33.6
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 5.9e-10 71.2 65 50.8
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 8.5e-09 67.4 46 67.4
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 3.6e-07 62.0 44 63.6
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 1.4e-06 60.1 45 57.8


User provided reference genes

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