Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010931 Vanilla planifolia HOM05D000361 ORTHO05D005006 5.6e-43 177.2 88 100.0
Rhsim04G0219200 Rhododendron simsii HOM05D000361 ORTHO05D005006 4.2e-30 134.4 74 86.5
MBI18_g31678_MAGBIO Magnolia biondii HOM05D000361 ORTHO05D005006 2.1e-26 122.1 115 58.3
Os12g0560700 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D005006 1.8e-25 119.0 115 59.1
Zm00001eb028400 Zea mays HOM05D000361 ORTHO05D005006 1.8e-25 119.0 115 59.1
Zm00001eb137000 Zea mays HOM05D000361 ORTHO05D005006 2.4e-25 118.6 115 58.3
BcaB01g02413 Brassica carinata HOM05D000361 ORTHO05D005006 6.9e-25 117.1 67 82.1
Peaxi162Scf00691g00215 Petunia axillaris HOM05D000361 ORTHO05D005006 6.9e-25 117.1 115 56.5
TWI36G0681 Tripterygium wilfordii HOM05D000361 ORTHO05D005006 6.9e-25 117.1 115 56.5
CAN.G777.10 Capsicum annuum HOM05D000361 ORTHO05D005006 1.5e-24 115.9 115 56.5
Sabra14G0089600 Salix brachista HOM05D000361 ORTHO05D005006 2.0e-24 115.5 116 56.0
Solyc01g079500.4 Solanum lycopersicum HOM05D000361 ORTHO05D005006 2.0e-24 115.5 115 55.7
Sopen01g031270 Solanum pennellii HOM05D000361 ORTHO05D005006 2.0e-24 115.5 115 55.7
PGSC0003DMG400009040 Solanum tuberosum HOM05D000361 ORTHO05D005006 2.0e-24 115.5 115 55.7
Actinidia25846 Actinidia chinensis HOM05D000361 ORTHO05D005006 2.6e-24 115.2 115 54.8
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 3.4e-24 114.8 115 55.7
FvH4_5g39230 Fragaria vesca HOM05D000361 ORTHO05D005006 3.4e-24 114.8 115 55.7
FAN04G2249 Fragaria x ananassa HOM05D000361 ORTHO05D005006 3.4e-24 114.8 115 55.7
FAN08G1249 Fragaria x ananassa HOM05D000361 ORTHO05D005006 3.4e-24 114.8 115 55.7
FAN18G2212 Fragaria x ananassa HOM05D000361 ORTHO05D005006 3.4e-24 114.8 115 55.7
Lj1A17T32 Lonicera japonica HOM05D000361 ORTHO05D005006 3.4e-24 114.8 115 55.7
QL12p019977 Quercus lobata HOM05D000361 ORTHO05D005006 3.4e-24 114.8 115 55.7
RcHm_v2.0_Chr7g0241501 Rosa chinensis HOM05D000361 ORTHO05D005006 3.4e-24 114.8 115 55.7
Sed0026353 Sechium edule HOM05D000361 ORTHO05D005006 3.4e-24 114.8 115 55.7
unitig_0.g278 Utricularia gibba HOM05D000361 ORTHO05D005006 3.4e-24 114.8 115 55.7
vmacro15112 Vaccinium macrocarpon HOM05D000361 ORTHO05D005006 3.4e-24 114.8 115 55.7
Hma1.2p1_0486F.1_g163240 Hydrangea macrophylla HOM05D000361 ORTHO05D005006 4.5e-24 114.4 115 55.7
Rhsim01G0290500 Rhododendron simsii HOM05D000361 ORTHO05D005006 4.5e-24 114.4 115 55.7
SalBow2G0319 Salvia bowleyana HOM05D000361 ORTHO05D005006 4.5e-24 114.4 115 54.8
Duzib133G0702 Durio zibethinus HOM05D000361 ORTHO05D005006 5.8e-24 114.0 115 55.7
Lj1g0011090 Lotus japonicus HOM05D000361 ORTHO05D005006 5.8e-24 114.0 115 56.5
Oeu040555.1 Olea europaea HOM05D000361 ORTHO05D005006 5.8e-24 114.0 115 55.7
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 7.6e-24 113.6 115 54.8
Cc01_g21380 Coffea canephora HOM05D000361 ORTHO05D005006 7.6e-24 113.6 115 54.8
Haze_05038 Corylus avellana HOM05D000361 ORTHO05D005006 7.6e-24 113.6 115 54.8
Lalb_Chr04g0259941 Lupinus albus HOM05D000361 ORTHO05D005006 7.6e-24 113.6 115 54.8
Prupe.8G272000 Prunus persica HOM05D000361 ORTHO05D005006 7.6e-24 113.6 115 54.8
CiPaw.07G117300 Carya illinoinensis HOM05D000361 ORTHO05D005006 1.0e-23 113.2 115 54.8
Glyma.19G216100 Glycine max HOM05D000361 ORTHO05D005006 1.0e-23 113.2 115 54.8
Medtr7g109480 Medicago truncatula HOM05D000361 ORTHO05D005006 1.0e-23 113.2 115 54.8
Potri.014G121000 Populus trichocarpa HOM05D000361 ORTHO05D005006 1.0e-23 113.2 115 56.5
Aqoxy2G02772 Aquilegia oxysepala HOM05D000361 ORTHO05D005006 1.3e-23 112.8 115 55.7
ClCG09G005120 Citrullus lanatus HOM05D000361 ORTHO05D005006 1.3e-23 112.8 115 54.8
Ciclev10019324m.g Citrus clementina HOM05D000361 ORTHO05D005006 1.3e-23 112.8 115 53.9
MELO3C015926.2 Cucumis melo HOM05D000361 ORTHO05D005006 1.3e-23 112.8 115 54.8
CsaV3_7G029940 Cucumis sativus L. HOM05D000361 ORTHO05D005006 1.3e-23 112.8 115 54.8
Duzib138G1298 Durio zibethinus HOM05D000361 ORTHO05D005006 1.3e-23 112.8 115 54.8
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 1.3e-23 112.8 115 54.8
Manes.05G003100 Manihot esculenta HOM05D000361 ORTHO05D005006 1.3e-23 112.8 115 54.8
Nn4g25602 Nelumbo nucifera HOM05D000361 ORTHO05D005006 1.3e-23 112.8 115 55.7
CANSAT25G2674 Cannabis sativa HOM05D000361 ORTHO05D005006 1.7e-23 112.5 115 56.5
arahy.Tifrunner.gnm1.ann1.1KN0VJ Arachis hypogaea HOM05D000361 ORTHO05D005006 2.2e-23 112.1 115 53.9
arahy.Tifrunner.gnm1.ann1.KD1TI7 Arachis hypogaea HOM05D000361 ORTHO05D005006 2.2e-23 112.1 115 53.9
Ca_09208_v3 Cicer arietinum L. HOM05D000361 ORTHO05D005006 2.2e-23 112.1 115 53.9
Psat3g019960 Pisum sativum HOM05D000361 ORTHO05D005006 2.2e-23 112.1 115 53.0
SGA_v2.0_scaffold8G04571 Striga asiatica HOM05D000361 ORTHO05D005006 2.2e-23 112.1 115 55.7
Migut.D00627 Erythranthe guttata HOM05D000361 ORTHO05D005006 2.9e-23 111.7 115 54.8
Lsat_1_v5_gn_7_101281 Lactuca sativa HOM05D000361 ORTHO05D005006 2.9e-23 111.7 115 54.8
Nitab4.5_0001301g0020 Nicotiana tabacum HOM05D000361 ORTHO05D005006 2.9e-23 111.7 115 53.9
Nitab4.5_0011075g0010 Nicotiana tabacum HOM05D000361 ORTHO05D005006 2.9e-23 111.7 115 53.9
Hund09629 Selenicereus undatus HOM05D000361 ORTHO05D005006 2.9e-23 111.7 115 54.8
THA.LOC104801305 Tarenaya hassleriana HOM05D000361 ORTHO05D005006 2.9e-23 111.7 115 53.9
CDE05G0987 Ceratophyllum demersum HOM05D000361 ORTHO05D005006 3.8e-23 111.3 115 54.8
COL.COLO4_23235 Corchorus olitorius HOM05D000361 ORTHO05D005006 3.8e-23 111.3 115 54.8
TAR636G2453 Trochodendron aralioides HOM05D000361 ORTHO05D005006 3.8e-23 111.3 115 54.8
CSS0002573 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D005006 4.9e-23 110.9 115 53.9
Gohir.A11G109800 Gossypium hirsutum HOM05D000361 ORTHO05D005006 4.9e-23 110.9 115 54.8
Gohir.D11G114800 Gossypium hirsutum HOM05D000361 ORTHO05D005006 4.9e-23 110.9 115 54.8
Gorai.007G123000 Gossypium raimondii HOM05D000361 ORTHO05D005006 4.9e-23 110.9 115 54.8
Thecc.01G313100 Theobroma cacao HOM05D000361 ORTHO05D005006 4.9e-23 110.9 115 54.8
TPR.G4047 Trifolium pratense HOM05D000361 ORTHO05D005006 4.9e-23 110.9 115 53.0
FAN13G2584 Fragaria x ananassa HOM05D000361 ORTHO05D005006 6.5e-23 110.5 115 53.9
Phvul.001G212600 Phaseolus vulgaris HOM05D000361 ORTHO05D005006 6.5e-23 110.5 115 53.0
PGR119G0744 Punica granatum HOM05D000361 ORTHO05D005006 6.5e-23 110.5 115 53.9
GSVIVG01028118001 Vitis vinifera HOM05D000361 ORTHO05D005006 6.5e-23 110.5 115 53.9
AL6G51180 Arabidopsis lyrata HOM05D000361 ORTHO05D005006 8.4e-23 110.2 115 54.8
EL10As5g23528 Beta vulgaris HOM05D000361 ORTHO05D005006 8.4e-23 110.2 115 53.9
Ah.02g112300 Amaranthus hybridus HOM05D000361 ORTHO05D005006 1.1e-22 109.8 115 53.0
AUR62011814 Chenopodium quinoa HOM05D000361 ORTHO05D005006 1.1e-22 109.8 115 53.9
AUR62024658 Chenopodium quinoa HOM05D000361 ORTHO05D005006 1.1e-22 109.8 115 53.9
HanXRQChr06g0168201 Helianthus annuus HOM05D000361 ORTHO05D005006 1.1e-22 109.8 115 53.0
Manes.01G227600 Manihot esculenta HOM05D000361 ORTHO05D005006 1.1e-22 109.8 84 69.0
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 1.4e-22 109.4 115 53.9
Eucgr.H01043 Eucalyptus grandis HOM05D000361 ORTHO05D005006 1.4e-22 109.4 115 52.2
VMungo1383G3610 Vigna mungo HOM05D000361 ORTHO05D005006 1.4e-22 109.4 115 53.0
Aa31LG5G1690 Aethionema arabicum HOM05D000361 ORTHO05D005006 1.9e-22 109.0 115 53.9
Glyma.03G219200 Glycine max HOM05D000361 ORTHO05D005006 2.5e-22 108.6 115 53.0
Sc24g0003240 Simmondsia chinensis HOM05D000361 ORTHO05D005006 2.5e-22 108.6 115 53.0
AT4G02060 Arabidopsis thaliana HOM05D000361 ORTHO05D005006 3.2e-22 108.2 115 53.9
MSTRG.18104 Avicennia marina HOM05D000361 ORTHO05D005006 3.2e-22 108.2 115 53.9
SEGI_30867 Sequoiadendron giganteum HOM05D000361 ORTHO05D005006 4.2e-22 107.8 115 52.2
PSO170G2199 Papaver somniferum HOM05D000361 ORTHO05D005006 5.5e-22 107.5 117 53.8
PSO357G0136 Papaver somniferum HOM05D000361 ORTHO05D005006 5.5e-22 107.5 117 53.8
Atru.chr5.1004 Acer truncatum HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 52.2
BcaB01g02083 Brassica carinata HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 53.0
BcaC01g06779 Brassica carinata HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 53.0
BcaC04g24032 Brassica carinata HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 53.0
A03p31270 Brassica napus HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 53.0
A09p01520 Brassica napus HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 53.0
C03p38170 Brassica napus HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 53.0
C09p01630 Brassica napus HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 53.0
BolC3t16098H Brassica oleracea HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 53.0
BolC9t53096H Brassica oleracea HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 53.0
BraA03t12307Z Brassica rapa HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 53.0
BraA09t35812Z Brassica rapa HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 53.0
Cpa.g.sc18.41 Carica papaya HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 53.9
Thhalv10028471m.g Eutrema salsugineum HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 53.0
Sp6g01940 Schrenkiella parvula HOM05D000361 ORTHO05D005006 7.1e-22 107.1 115 53.0
Actinidia20997 Actinidia chinensis HOM05D000361 ORTHO05D005006 2.1e-21 105.5 59 86.4
BcaB01g02409 Brassica carinata HOM05D000361 ORTHO05D005006 4.6e-21 104.4 116 50.9
CARHR249620 Cardamine hirsuta HOM05D000361 ORTHO05D005006 4.6e-21 104.4 115 52.2
MD01G1012600 Malus domestica HOM05D000361 ORTHO05D005006 4.6e-21 104.4 117 53.0
ATR0706G090 Amborella trichopoda HOM05D000361 ORTHO05D005006 7.9e-21 103.6 114 50.9
Carub.0006s3517 Capsella rubella HOM05D000361 ORTHO05D005006 7.9e-21 103.6 115 53.0
SMO367G1185 Selaginella moellendorffii HOM05D000361 ORTHO05D005006 7.9e-21 103.6 115 49.6
MD03G1295400 Malus domestica HOM05D000361 ORTHO05D005006 1.0e-20 103.2 117 52.1
Gohir.D08G140250 Gossypium hirsutum HOM05D000361 ORTHO05D005006 1.3e-20 102.8 115 51.3
Mapoly0075s0022 Marchantia polymorpha HOM05D000361 ORTHO05D005006 1.8e-20 102.4 115 50.4
Gorai.004G144300 Gossypium raimondii HOM05D000361 ORTHO05D005006 6.7e-20 100.5 118 48.3
SEGI_35774 Sequoiadendron giganteum HOM05D000361 ORTHO05D005006 6.7e-20 100.5 59 79.7
Nitab4.5_0005471g0040 Nicotiana tabacum HOM05D000361 ORTHO05D005006 8.7e-20 100.1 115 48.7
Migut.L00246 Erythranthe guttata HOM05D000361 ORTHO05D005006 1.1e-19 99.8 104 51.9
Nitab4.5_0000540g0210 Nicotiana tabacum HOM05D000361 ORTHO05D005006 4.3e-19 97.8 59 76.3
AagrBONN_evm.TU.Sc2ySwM_340.492 Anthoceros agrestis HOM05D000361 ORTHO05D005006 1.6e-18 95.9 115 47.0
Pp3c11_23510 Physcomitrium patens HOM05D000361 ORTHO05D005006 1.4e-17 92.8 115 45.2
CBR_g49870 Chara braunii HOM05D000361 ORTHO05D005006 1.4e-12 76.3 115 40.0
PRCOL_00004712 Prasinoderma coloniale HOM05D000361 ORTHO05D005006 1.7e-10 69.3 112 37.5
MCO01G344 Micromonas commoda HOM05D000361 ORTHO05D005006 2.8e-10 68.6 114 36.0
Cre10.g455850 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D005006 4.1e-09 64.7 59 50.8
Haze_26393 Corylus avellana HOM05D000361 ORTHO05D005006 4.1e-09 64.7 61 52.5
Cfa026932 Carpinus fangiana HOM05D000361 ORTHO05D005006 3.8e-07 58.2 103 32.0
HanXRQChr13g0387741 Helianthus annuus HOM05D000361 ORTHO05D005006 3.2e-06 55.1 39 66.7


User provided reference genes

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