Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 3.8e-102 374.8 181 100.0
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 3.5e-47 192.2 162 54.3
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 2.5e-45 186.0 167 54.5
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 2.5e-45 186.0 172 54.1
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.1e-44 183.0 170 50.6
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 6.1e-44 181.4 167 53.3
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.0e-43 180.6 169 55.0
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 4.0e-43 178.7 171 49.7
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 6.8e-43 177.9 141 58.2
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 8.9e-43 177.6 123 61.8
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.2e-42 177.2 165 50.3
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.5e-42 176.8 171 50.3
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.0e-42 176.4 166 50.0
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 2.6e-42 176.0 172 52.3
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 2.6e-42 176.0 170 48.2
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 3.4e-42 175.6 173 48.6
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 4.4e-42 175.3 171 50.9
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 7.5e-42 174.5 173 48.0
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 9.8e-42 174.1 173 48.6
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 1.3e-41 173.7 166 51.8
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.3e-41 173.7 165 53.3
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.7e-41 173.3 164 51.2
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 1.7e-41 173.3 165 52.7
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.7e-41 173.3 165 52.7
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.7e-41 173.3 166 48.8
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 2.2e-41 172.9 150 55.3
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.2e-41 172.9 164 53.0
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 2.8e-41 172.6 166 53.6
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 3.7e-41 172.2 189 47.6
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.7e-41 172.2 165 52.7
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 4.9e-41 171.8 173 48.6
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 4.9e-41 171.8 165 52.7
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 4.9e-41 171.8 164 53.7
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 4.9e-41 171.8 174 51.1
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.3e-41 171.4 166 48.8
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 6.3e-41 171.4 173 49.7
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 6.3e-41 171.4 173 48.6
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 8.3e-41 171.0 168 51.2
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 8.3e-41 171.0 168 51.8
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.3e-41 171.0 165 52.1
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 8.3e-41 171.0 164 51.2
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.1e-40 170.6 189 47.1
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.8e-40 169.9 165 52.7
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 2.4e-40 169.5 157 52.2
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 2.4e-40 169.5 153 54.2
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 4.1e-40 168.7 168 50.6
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 4.1e-40 168.7 167 50.9
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.4e-40 168.3 150 56.0
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 5.4e-40 168.3 169 47.9
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 9.2e-40 167.5 165 49.1
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 9.2e-40 167.5 166 52.4
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 9.2e-40 167.5 171 51.5
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 1.6e-39 166.8 164 48.8
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.7e-39 166.0 179 48.0
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 2.7e-39 166.0 171 46.8
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 3.5e-39 165.6 121 60.3
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 3.5e-39 165.6 163 51.5
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 3.5e-39 165.6 156 52.6
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 3.5e-39 165.6 172 49.4
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 4.5e-39 165.2 164 48.2
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 5.9e-39 164.9 150 55.3
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 5.9e-39 164.9 150 55.3
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 7.8e-39 164.5 121 58.7
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.0e-38 164.1 150 54.7
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.0e-38 164.1 150 54.7
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.0e-38 164.1 150 54.7
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.0e-38 164.1 150 54.7
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.3e-38 163.7 165 49.7
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.3e-38 163.7 166 48.2
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.3e-38 163.7 165 48.5
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.3e-38 163.7 165 49.7
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.7e-38 163.3 173 49.1
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 1.7e-38 163.3 161 53.4
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.3e-38 162.9 165 47.3
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 5.0e-38 161.8 170 51.2
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 5.0e-38 161.8 168 48.8
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 5.0e-38 161.8 169 47.3
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 5.0e-38 161.8 168 47.6
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 5.0e-38 161.8 168 47.6
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 5.0e-38 161.8 121 60.3
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 6.6e-38 161.4 150 54.7
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 1.1e-37 160.6 189 44.4
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.9e-37 159.8 164 49.4
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.9e-37 159.8 174 46.0
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 2.5e-37 159.5 174 47.1
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 2.5e-37 159.5 159 52.2
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 2.5e-37 159.5 121 57.0
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 3.3e-37 159.1 150 53.3
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 3.3e-37 159.1 150 53.3
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 3.3e-37 159.1 150 53.3
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.3e-37 159.1 117 59.8
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 4.3e-37 158.7 149 53.0
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 4.3e-37 158.7 108 63.9
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 5.6e-37 158.3 152 53.3
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 5.6e-37 158.3 174 44.8
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 7.3e-37 157.9 124 58.1
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 7.3e-37 157.9 150 52.0
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 7.3e-37 157.9 117 57.3
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.6e-36 156.8 165 46.1
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 6.1e-36 154.8 198 40.9
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 6.1e-36 154.8 164 51.2
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 8.0e-36 154.5 171 46.2
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 8.0e-36 154.5 171 46.2
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 1.4e-35 153.7 198 40.9
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 2.3e-35 152.9 180 43.3
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.0e-35 152.1 109 57.8
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 8.9e-35 151.0 108 61.1
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.2e-34 150.6 121 54.5
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.5e-34 150.2 163 46.0
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 2.0e-34 149.8 166 44.6
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 3.4e-34 149.1 163 47.2
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 4.4e-34 148.7 150 46.0
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 4.4e-34 148.7 167 47.3
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 4.4e-34 148.7 166 44.0
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.4e-34 148.7 165 45.5
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 5.8e-34 148.3 159 50.9
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 7.5e-34 147.9 115 56.5
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 2.2e-33 146.4 170 47.6
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.2e-33 146.4 165 46.1
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.2e-33 146.4 141 51.8
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 2.2e-33 146.4 166 44.0
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 3.7e-33 145.6 166 44.0
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 1.1e-32 144.1 165 44.8
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.4e-32 143.7 141 48.9
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 1.9e-32 143.3 131 54.2
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.2e-32 142.5 118 56.8
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.7e-31 139.4 116 55.2
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 4.6e-31 138.7 115 55.7
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.7e-30 136.7 173 43.4
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.6e-30 134.8 108 54.6
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 8.6e-30 134.4 165 44.2
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.5e-29 132.9 108 54.6
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 9.5e-29 131.0 125 47.2
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.5e-29 131.0 108 50.0
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 6.8e-27 124.8 182 35.2
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 8.9e-27 124.4 178 37.1
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 7.5e-26 121.3 165 37.0
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-25 120.2 103 48.5
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 2.2e-25 119.8 142 40.1
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.9e-25 119.4 180 37.2
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.9e-25 119.4 146 39.7
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 4.9e-25 118.6 114 43.9
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 8.3e-25 117.9 108 50.0
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.0e-24 114.8 98 49.0
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 9.2e-24 114.4 118 43.2
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 9.2e-24 114.4 107 46.7
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 9.2e-24 114.4 156 40.4
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 2.3e-22 109.8 98 51.0
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 3.9e-22 109.0 114 44.7
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 3.3e-21 105.9 109 45.9
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 5.6e-21 105.1 138 39.1
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 7.3e-21 104.8 106 44.3
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 9.5e-21 104.4 103 43.7
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.6e-20 102.4 90 53.3
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.6e-20 102.4 96 51.0
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 8.1e-20 101.3 104 45.2
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 1.1e-19 100.9 128 38.3
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 1.8e-19 100.1 148 37.2
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 8.9e-19 97.8 148 35.1
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 8.9e-19 97.8 78 53.8
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.2e-18 97.4 102 46.1
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-17 93.6 83 51.8
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 3.0e-14 82.8 111 41.4
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 1.9e-13 80.1 101 45.5
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.5e-13 79.7 73 50.7
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 1.6e-12 77.0 142 31.0
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.5e-10 70.5 115 39.1
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.6e-10 69.7 62 46.8
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 1.1e-08 64.3 44 65.9
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 4.2e-08 62.4 67 41.8
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 7.1e-08 61.6 118 31.4


User provided reference genes

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