Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009231 Vanilla planifolia HOM05D005173 ORTHO05D006214 9.6e-89 330.1 162 100.0
TWI32G0591 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 3.5e-59 231.9 136 75.0
Glyma.13G107800 Glycine max HOM05D005173 ORTHO05D006214 4.6e-59 231.5 134 76.9
MELO3C015504.2 Cucumis melo HOM05D005173 ORTHO05D006214 1.0e-58 230.3 136 75.7
Glyma.17G051500 Glycine max HOM05D005173 ORTHO05D006214 1.0e-58 230.3 134 76.1
Manes.03G037700 Manihot esculenta HOM05D005173 ORTHO05D006214 1.8e-58 229.6 147 70.7
CSS0048515 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 2.3e-58 229.2 133 77.4
ClCG03G015280 Citrullus lanatus HOM05D005173 ORTHO05D006214 2.3e-58 229.2 136 75.0
Lj4g0027115 Lotus japonicus HOM05D005173 ORTHO05D006214 2.3e-58 229.2 134 74.6
Lalb_Chr07g0181031 Lupinus albus HOM05D005173 ORTHO05D006214 2.3e-58 229.2 135 77.0
QL02p061251 Quercus lobata HOM05D005173 ORTHO05D006214 3.9e-58 228.4 129 79.1
QL02p061362 Quercus lobata HOM05D005173 ORTHO05D006214 3.9e-58 228.4 129 79.1
MD15G1213300 Malus domestica HOM05D005173 ORTHO05D006214 5.1e-58 228.0 136 72.8
Atru.chr7.1658 Acer truncatum HOM05D005173 ORTHO05D006214 6.7e-58 227.6 134 74.6
Phvul.003G133200 Phaseolus vulgaris HOM05D005173 ORTHO05D006214 8.7e-58 227.3 128 78.9
CsaV3_1G040770 Cucumis sativus L. HOM05D005173 ORTHO05D006214 1.1e-57 226.9 130 77.7
Dinv42364 Davidia involucrata HOM05D005173 ORTHO05D006214 1.5e-57 226.5 138 75.4
PGR142G0948 Punica granatum HOM05D005173 ORTHO05D006214 1.5e-57 226.5 128 77.3
Sed0012764 Sechium edule HOM05D005173 ORTHO05D006214 1.5e-57 226.5 136 74.3
TWI63G0548 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 1.5e-57 226.5 130 75.4
arahy.Tifrunner.gnm1.ann1.6AS4TW Arachis hypogaea HOM05D005173 ORTHO05D006214 1.9e-57 226.1 135 76.3
arahy.Tifrunner.gnm1.ann1.9Y0BJI Arachis hypogaea HOM05D005173 ORTHO05D006214 1.9e-57 226.1 135 76.3
MD02G1086100 Malus domestica HOM05D005173 ORTHO05D006214 2.5e-57 225.7 135 73.3
Prupe.7G203600 Prunus persica HOM05D005173 ORTHO05D006214 2.5e-57 225.7 135 74.1
Actinidia39689 Actinidia chinensis HOM05D005173 ORTHO05D006214 3.3e-57 225.3 141 73.8
Thecc.09G081500 Theobroma cacao HOM05D005173 ORTHO05D006214 3.3e-57 225.3 130 77.7
VMungo1215G2902 Vigna mungo HOM05D005173 ORTHO05D006214 4.3e-57 224.9 133 75.2
Potri.018G064800 Populus trichocarpa HOM05D005173 ORTHO05D006214 5.7e-57 224.6 136 72.1
Hma1.2p1_0797F.1_g219350 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 7.4e-57 224.2 130 76.2
Ca_21308_v3 Cicer arietinum L. HOM05D005173 ORTHO05D006214 9.6e-57 223.8 134 73.9
CiPaw.03G210500 Carya illinoinensis HOM05D005173 ORTHO05D006214 1.6e-56 223.0 134 73.9
Potri.006G145200 Populus trichocarpa HOM05D005173 ORTHO05D006214 1.6e-56 223.0 136 71.3
Sabra18G0057400 Salix brachista HOM05D005173 ORTHO05D006214 1.6e-56 223.0 137 70.8
Dinv25585 Davidia involucrata HOM05D005173 ORTHO05D006214 2.1e-56 222.6 141 73.0
Migut.L01541 Erythranthe guttata HOM05D005173 ORTHO05D006214 2.1e-56 222.6 135 74.1
Lalb_Chr12g0200011 Lupinus albus HOM05D005173 ORTHO05D006214 2.8e-56 222.2 127 77.2
Nn8g38732 Nelumbo nucifera HOM05D005173 ORTHO05D006214 2.8e-56 222.2 136 75.0
Cpa.g.sc28.94 Carica papaya HOM05D005173 ORTHO05D006214 3.7e-56 221.9 135 71.9
COL.COLO4_18139 Corchorus olitorius HOM05D005173 ORTHO05D006214 4.8e-56 221.5 134 73.9
vmacro17173 Vaccinium macrocarpon HOM05D005173 ORTHO05D006214 4.8e-56 221.5 132 74.2
Haze_25966 Corylus avellana HOM05D005173 ORTHO05D006214 6.3e-56 221.1 129 76.0
Rhsim05G0012900 Rhododendron simsii HOM05D005173 ORTHO05D006214 6.3e-56 221.1 133 74.4
Sabra06G0114800 Salix brachista HOM05D005173 ORTHO05D006214 8.2e-56 220.7 136 71.3
Duzib168G0179 Durio zibethinus HOM05D005173 ORTHO05D006214 1.1e-55 220.3 134 72.4
Lj7C682G9 Lonicera japonica HOM05D005173 ORTHO05D006214 1.1e-55 220.3 130 76.9
SalBow1G6961 Salvia bowleyana HOM05D005173 ORTHO05D006214 1.1e-55 220.3 129 76.7
Sed0013811 Sechium edule HOM05D005173 ORTHO05D006214 1.1e-55 220.3 136 72.8
Os07g0608300 Oryza sativa ssp. japonica HOM05D005173 ORTHO05D006214 1.4e-55 219.9 127 77.2
Eucgr.C00843 Eucalyptus grandis HOM05D005173 ORTHO05D006214 1.8e-55 219.5 136 71.3
Ciclev10008959m.g Citrus clementina HOM05D005173 ORTHO05D006214 3.1e-55 218.8 130 74.6
Duzib150G1290 Durio zibethinus HOM05D005173 ORTHO05D006214 4.1e-55 218.4 134 73.9
Gohir.A13G192200 Gossypium hirsutum HOM05D005173 ORTHO05D006214 4.1e-55 218.4 136 72.8
Oeu054818.3 Olea europaea HOM05D005173 ORTHO05D006214 5.3e-55 218.0 134 73.1
TAR624G0255 Trochodendron aralioides HOM05D005173 ORTHO05D006214 5.3e-55 218.0 134 73.1
HanXRQChr01g0007561 Helianthus annuus HOM05D005173 ORTHO05D006214 6.9e-55 217.6 123 77.2
TAR636G1303 Trochodendron aralioides HOM05D005173 ORTHO05D006214 6.9e-55 217.6 136 70.6
Gorai.013G226300 Gossypium raimondii HOM05D005173 ORTHO05D006214 9.0e-55 217.2 124 78.2
GSVIVG01015121001 Vitis vinifera HOM05D005173 ORTHO05D006214 1.2e-54 216.9 135 71.9
Zm00001eb108940 Zea mays HOM05D005173 ORTHO05D006214 1.2e-54 216.9 127 74.8
MSTRG.26457 Avicennia marina HOM05D005173 ORTHO05D006214 1.5e-54 216.5 133 73.7
Ah.14g085040 Amaranthus hybridus HOM05D005173 ORTHO05D006214 2.6e-54 215.7 139 71.9
HPP92_006149 Vanilla planifolia HOM05D005173 ORTHO05D006214 2.6e-54 215.7 136 72.1
DCAR_024724 Daucus carota HOM05D005173 ORTHO05D006214 3.4e-54 215.3 128 76.6
Medtr4g125660 Medicago truncatula HOM05D005173 ORTHO05D006214 3.4e-54 215.3 129 73.6
CAN.G88.5 Capsicum annuum HOM05D005173 ORTHO05D006214 5.9e-54 214.5 136 70.6
Sc18g0002360 Simmondsia chinensis HOM05D005173 ORTHO05D006214 5.9e-54 214.5 129 75.2
TPR.G23232 Trifolium pratense HOM05D005173 ORTHO05D006214 5.9e-54 214.5 134 70.1
FAN26G1854 Fragaria x ananassa HOM05D005173 ORTHO05D006214 7.6e-54 214.2 135 68.9
RcHm_v2.0_Chr2g0094221 Rosa chinensis HOM05D005173 ORTHO05D006214 7.6e-54 214.2 135 69.6
Aqoxy7G01101 Aquilegia oxysepala HOM05D005173 ORTHO05D006214 1.0e-53 213.8 128 73.4
Psat4g016960 Pisum sativum HOM05D005173 ORTHO05D006214 1.0e-53 213.8 130 72.3
FAN23G0270 Fragaria x ananassa HOM05D005173 ORTHO05D006214 1.7e-53 213.0 134 69.4
HanXRQChr09g0237971 Helianthus annuus HOM05D005173 ORTHO05D006214 1.7e-53 213.0 136 72.8
MSTRG.19482 Avicennia marina HOM05D005173 ORTHO05D006214 2.2e-53 212.6 129 73.6
Peaxi162Scf00246g00045 Petunia axillaris HOM05D005173 ORTHO05D006214 2.9e-53 212.2 136 69.1
AUR62029004 Chenopodium quinoa HOM05D005173 ORTHO05D006214 3.8e-53 211.8 134 70.9
Cc00_g19370 Coffea canephora HOM05D005173 ORTHO05D006214 3.8e-53 211.8 127 73.2
FvH4_1g08150 Fragaria vesca HOM05D005173 ORTHO05D006214 3.8e-53 211.8 134 68.7
FAN19G2713 Fragaria x ananassa HOM05D005173 ORTHO05D006214 5.0e-53 211.5 134 68.7
BcaB08g36505 Brassica carinata HOM05D005173 ORTHO05D006214 6.5e-53 211.1 135 69.6
EL10Ac8g19142 Beta vulgaris HOM05D005173 ORTHO05D006214 8.4e-53 210.7 127 72.4
Manes.16G098000 Manihot esculenta HOM05D005173 ORTHO05D006214 8.4e-53 210.7 149 63.8
FAN26G2726 Fragaria x ananassa HOM05D005173 ORTHO05D006214 1.1e-52 210.3 134 68.7
AUR62025172 Chenopodium quinoa HOM05D005173 ORTHO05D006214 1.9e-52 209.5 123 76.4
FAN28G2824 Fragaria x ananassa HOM05D005173 ORTHO05D006214 1.9e-52 209.5 136 69.9
Solyc07g041200.3 Solanum lycopersicum HOM05D005173 ORTHO05D006214 1.9e-52 209.5 136 67.6
Sopen07g020470 Solanum pennellii HOM05D005173 ORTHO05D006214 1.9e-52 209.5 136 67.6
PGSC0003DMG400020952 Solanum tuberosum HOM05D005173 ORTHO05D006214 1.9e-52 209.5 136 67.6
Lsat_1_v5_gn_5_142000 Lactuca sativa HOM05D005173 ORTHO05D006214 3.2e-52 208.8 136 69.9
MSTRG.10526 Avicennia marina HOM05D005173 ORTHO05D006214 5.5e-52 208.0 134 70.9
CANSAT56G2861 Cannabis sativa HOM05D005173 ORTHO05D006214 5.5e-52 208.0 129 69.8
Nitab4.5_0001488g0160 Nicotiana tabacum HOM05D005173 ORTHO05D006214 5.5e-52 208.0 136 67.6
Nitab4.5_0013150g0020 Nicotiana tabacum HOM05D005173 ORTHO05D006214 5.5e-52 208.0 136 67.6
Gohir.D13G197600 Gossypium hirsutum HOM05D005173 ORTHO05D006214 1.6e-51 206.5 124 76.6
PSO063G3756 Papaver somniferum HOM05D005173 ORTHO05D006214 2.1e-51 206.1 135 68.1
PSO421G0551 Papaver somniferum HOM05D005173 ORTHO05D006214 4.6e-51 204.9 135 68.1
A02p06290 Brassica napus HOM05D005173 ORTHO05D006214 6.1e-51 204.5 135 68.1
BolC9t58435H Brassica oleracea HOM05D005173 ORTHO05D006214 6.1e-51 204.5 135 67.4
BraA02t05577Z Brassica rapa HOM05D005173 ORTHO05D006214 6.1e-51 204.5 135 68.1
BcaB05g22835 Brassica carinata HOM05D005173 ORTHO05D006214 7.9e-51 204.1 135 68.1
BolC2t07046H Brassica oleracea HOM05D005173 ORTHO05D006214 7.9e-51 204.1 135 68.1
BcaC04g19437 Brassica carinata HOM05D005173 ORTHO05D006214 1.0e-50 203.8 134 67.9
C09p55690 Brassica napus HOM05D005173 ORTHO05D006214 1.0e-50 203.8 134 67.9
BcaB05g22843 Brassica carinata HOM05D005173 ORTHO05D006214 1.3e-50 203.4 133 69.2
A10p19490 Brassica napus HOM05D005173 ORTHO05D006214 1.3e-50 203.4 134 67.9
BraA10t44025Z Brassica rapa HOM05D005173 ORTHO05D006214 1.3e-50 203.4 134 67.9
THA.LOC104799624 Tarenaya hassleriana HOM05D005173 ORTHO05D006214 1.3e-50 203.4 136 67.6
Sp6g23940 Schrenkiella parvula HOM05D005173 ORTHO05D006214 1.8e-50 203.0 134 67.9
Thhalv10014184m.g Eutrema salsugineum HOM05D005173 ORTHO05D006214 2.3e-50 202.6 133 68.4
unitig_22.g5750 Utricularia gibba HOM05D005173 ORTHO05D006214 2.3e-50 202.6 140 67.1
DCAR_028284 Daucus carota HOM05D005173 ORTHO05D006214 3.9e-50 201.8 134 69.4
ECA234G3859 Erigeron canadensis HOM05D005173 ORTHO05D006214 3.9e-50 201.8 134 67.9
SGA_v2.0_scaffold21G09462 Striga asiatica HOM05D005173 ORTHO05D006214 5.1e-50 201.4 164 59.8
Lsat_1_v5_gn_7_34821 Lactuca sativa HOM05D005173 ORTHO05D006214 6.7e-50 201.1 125 72.0
Aa31LG1G14140 Aethionema arabicum HOM05D005173 ORTHO05D006214 7.4e-49 197.6 135 65.2
Carub.0006s1885 Capsella rubella HOM05D005173 ORTHO05D006214 2.2e-48 196.1 124 70.2
CDE04G2820 Ceratophyllum demersum HOM05D005173 ORTHO05D006214 2.8e-48 195.7 129 68.2
AT5G20520 Arabidopsis thaliana HOM05D005173 ORTHO05D006214 4.8e-48 194.9 133 66.2
AL6G32050 Arabidopsis lyrata HOM05D005173 ORTHO05D006214 1.4e-47 193.4 128 66.4
CARHR192290 Cardamine hirsuta HOM05D005173 ORTHO05D006214 3.1e-47 192.2 129 67.4
SMO203G0271 Selaginella moellendorffii HOM05D005173 ORTHO05D006214 3.8e-45 185.3 129 65.1
SHI33752 Sapria himalayana HOM05D005173 ORTHO05D006214 8.5e-45 184.1 114 73.7
Mapoly0002s0260 Marchantia polymorpha HOM05D005173 ORTHO05D006214 3.6e-43 178.7 129 64.3
DCAR_031940 Daucus carota HOM05D005173 ORTHO05D006214 2.8e-40 169.1 97 75.3
Rhsim03G0230600 Rhododendron simsii HOM05D005173 ORTHO05D006214 7.4e-33 144.4 134 56.0
CBR_g3819 Chara braunii HOM05D005173 ORTHO05D006214 1.7e-32 143.3 129 56.6
Pp3c15_14310 Physcomitrium patens HOM05D005173 ORTHO05D006214 7.0e-31 137.9 120 56.7
BcaC03g13770 Brassica carinata HOM05D005173 ORTHO05D006214 3.2e-28 129.0 105 58.1
Actinidia25222 Actinidia chinensis HOM05D005173 ORTHO05D006214 8.0e-19 97.8 68 69.1
ATR0598G148 Amborella trichopoda HOM05D005173 ORTHO05D006214 4.4e-17 92.0 58 75.9
Cre03.g160100 Chlamydomonas reinhardtii HOM05D005173 ORTHO05D006214 2.2e-13 79.7 123 35.0
Nn2g12540 Nelumbo nucifera HOM05D005173 ORTHO05D006214 5.2e-10 68.6 55 52.7
Cfa026742 Carpinus fangiana HOM05D005173 ORTHO05D006214 1.7e-08 63.5 124 35.5
PRCOL_00002900 Prasinoderma coloniale HOM05D005173 ORTHO05D006214 3.7e-08 62.4 123 32.5


User provided reference genes

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