Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 2.2e-233 812.0 423 100.0
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.2e-210 736.5 423 88.4
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.5e-210 736.1 423 88.9
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 2.6e-210 735.3 422 87.9
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 5.4e-208 727.6 418 88.0
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 9.2e-208 726.9 420 87.6
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 9.2e-208 726.9 418 88.0
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 1.6e-207 726.1 423 87.2
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 5.9e-207 724.2 418 87.3
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.3e-206 723.0 420 86.4
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 5.0e-206 721.1 418 87.1
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 6.6e-206 720.7 423 86.3
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 8.6e-206 720.3 422 86.3
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 8.6e-206 720.3 418 86.8
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 1.1e-205 719.9 418 87.6
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 1.5e-205 719.5 422 86.3
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 2.5e-205 718.8 423 85.6
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 1.2e-204 716.5 422 85.3
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 1.2e-204 716.5 420 86.2
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 1.2e-204 716.5 418 86.8
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.1e-204 715.7 420 86.4
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 2.8e-204 715.3 420 85.7
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 3.6e-204 714.9 420 86.0
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 3.6e-204 714.9 418 86.4
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 4.7e-204 714.5 421 85.5
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 4.7e-204 714.5 423 86.5
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 6.1e-204 714.1 423 85.3
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 8.0e-204 713.8 420 85.2
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.0e-203 713.4 420 85.2
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 1.8e-203 712.6 422 86.0
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 1.8e-203 712.6 423 85.8
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 2.3e-203 712.2 420 85.7
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 2.3e-203 712.2 423 86.5
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 3.0e-203 711.8 423 86.5
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 3.0e-203 711.8 422 85.3
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 4.0e-203 711.4 418 85.6
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 4.0e-203 711.4 420 85.5
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 5.2e-203 711.1 422 84.4
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.2e-203 711.1 420 85.2
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 6.8e-203 710.7 420 85.5
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 8.9e-203 710.3 418 85.2
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 8.9e-203 710.3 420 85.0
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 8.9e-203 710.3 420 85.2
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 1.2e-202 709.9 423 85.3
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 1.2e-202 709.9 418 86.1
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 1.2e-202 709.9 422 85.3
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 1.2e-202 709.9 418 85.9
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 1.5e-202 709.5 420 85.2
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 2.0e-202 709.1 423 85.6
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.0e-202 709.1 429 84.1
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 2.0e-202 709.1 417 85.4
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 3.4e-202 708.4 423 83.9
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 5.7e-202 707.6 420 85.2
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 5.7e-202 707.6 421 85.0
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 7.5e-202 707.2 422 85.3
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 7.5e-202 707.2 421 84.3
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 7.5e-202 707.2 421 84.3
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 9.8e-202 706.8 423 84.4
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 9.8e-202 706.8 418 86.1
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 1.3e-201 706.4 418 85.2
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.7e-201 706.1 420 84.5
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 2.2e-201 705.7 423 84.9
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 2.2e-201 705.7 418 85.2
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 2.2e-201 705.7 423 85.1
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 2.2e-201 705.7 420 84.8
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 2.2e-201 705.7 418 85.6
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 2.9e-201 705.3 422 84.6
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 2.9e-201 705.3 420 84.8
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 2.9e-201 705.3 418 85.9
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 2.9e-201 705.3 418 85.4
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 3.7e-201 704.9 422 84.6
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 3.7e-201 704.9 422 84.4
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 4.9e-201 704.5 418 85.4
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 6.4e-201 704.1 422 85.1
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 8.3e-201 703.7 422 84.1
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 1.8e-200 702.6 422 84.8
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.8e-200 702.6 418 84.9
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 2.4e-200 702.2 422 84.6
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 3.2e-200 701.8 420 84.8
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 3.2e-200 701.8 420 84.8
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 3.2e-200 701.8 420 84.8
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 4.1e-200 701.4 422 84.4
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 5.4e-200 701.0 422 84.6
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 5.4e-200 701.0 470 77.9
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 5.4e-200 701.0 470 77.9
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 7.0e-200 700.7 422 84.4
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 9.2e-200 700.3 422 84.4
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 9.2e-200 700.3 418 84.9
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.6e-199 699.5 418 84.7
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.6e-199 699.5 422 83.9
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 2.0e-199 699.1 422 83.9
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.0e-199 699.1 438 81.7
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.0e-199 699.1 440 82.3
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 2.7e-199 698.7 422 84.4
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 2.7e-199 698.7 422 84.4
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 2.7e-199 698.7 422 84.4
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 3.5e-199 698.4 418 84.0
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 4.6e-199 698.0 423 84.4
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 5.9e-199 697.6 420 84.3
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 5.9e-199 697.6 422 84.4
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 7.8e-199 697.2 422 82.7
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 1.0e-198 696.8 423 82.5
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.0e-198 696.8 425 83.3
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 1.0e-198 696.8 431 82.4
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 3.9e-198 694.9 415 84.6
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 5.0e-198 694.5 418 84.7
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 1.5e-197 693.0 424 83.0
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 1.9e-197 692.6 418 84.0
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 3.3e-197 691.8 418 83.5
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 3.3e-197 691.8 423 83.5
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 9.5e-197 690.3 433 82.0
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 9.5e-197 690.3 418 84.7
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 1.4e-195 686.4 420 81.7
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 6.8e-195 684.1 427 82.7
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 6.8e-195 684.1 453 78.4
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 3.4e-194 681.8 426 81.0
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 5.8e-194 681.0 449 78.8
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 7.3e-189 664.1 388 87.1
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 4.7e-188 661.4 501 71.1
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.1e-187 660.2 421 81.2
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 1.2e-186 656.8 375 87.5
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 4.4e-186 654.8 411 80.8
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 2.9e-185 652.1 363 91.2
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.4e-184 649.8 389 84.3
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.6e-183 646.4 421 79.3
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.5e-183 645.2 468 74.4
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.6e-182 640.6 415 81.2
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 1.9e-181 639.4 378 83.9
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 4.7e-180 634.8 373 85.5
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 1.2e-175 620.2 396 78.5
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 3.0e-174 615.5 401 77.3
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 1.9e-168 596.3 397 75.3
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 3.9e-166 588.6 423 73.8
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 1.1e-165 587.0 425 71.3
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 7.3e-165 584.3 410 74.9
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 9.9e-162 573.9 334 85.6
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 8.7e-158 560.8 310 90.6
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 3.7e-148 528.9 422 64.9
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.9e-145 519.2 392 66.3
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 5.7e-141 505.0 402 65.2
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 4.6e-135 485.3 276 89.5
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 8.8e-134 481.1 459 60.6
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.8e-132 476.1 284 83.5
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 1.4e-126 457.2 391 66.0
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 1.4e-123 447.2 260 85.4
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 6.3e-116 421.8 243 88.1
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 1.7e-105 387.1 236 79.7
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 6.5e-105 385.2 225 85.3
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 5.4e-99 365.5 244 75.8
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 2.5e-96 356.7 205 86.8
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 7.3e-80 302.0 288 59.0
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 2.1e-74 283.9 296 51.4
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 1.4e-70 271.2 247 60.7
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 7.8e-66 255.4 147 85.7
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 6.4e-60 235.7 189 60.3
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 5.3e-54 216.1 134 79.9
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 1.3e-47 194.9 178 63.5
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 5.3e-46 189.5 119 78.2
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 5.8e-45 186.0 114 86.8
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 6.2e-39 166.0 289 37.0
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 2.9e-36 157.1 150 61.3
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 3.8e-36 156.8 157 59.9
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 4.9e-36 156.4 157 59.2
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 6.7e-33 146.0 109 70.6
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 7.4e-32 142.5 178 42.7
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.9e-27 127.9 82 76.8
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 4.1e-22 110.2 149 46.3
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 4.6e-18 96.7 69 69.6
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 5.9e-13 79.7 100 48.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 7.7e-13 79.3 48 83.3
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 1.0e-12 79.0 50 82.0
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 6.5e-12 76.3 40 95.0
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 1.0e-09 68.9 37 86.5
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 2.6e-08 64.3 60 55.0
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 2.8e-07 60.8 111 34.2
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 4.8e-07 60.1 113 33.6


User provided reference genes

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