Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008260 Vanilla planifolia HOM05D005362 ORTHO05D006895 3.1e-96 355.1 182 100.0
HPP92_008264 Vanilla planifolia HOM05D005362 ORTHO05D006895 3.3e-90 335.1 182 95.1
HPP92_008265 Vanilla planifolia HOM05D005362 ORTHO05D006895 1.2e-76 290.0 214 76.2
Os07g0603900 Oryza sativa ssp. japonica HOM05D005362 ORTHO05D006895 4.0e-67 258.5 174 73.6
Zm00001eb108830 Zea mays HOM05D005362 ORTHO05D006895 1.5e-66 256.5 174 74.1
TAR371G1139 Trochodendron aralioides HOM05D005362 ORTHO05D006895 1.7e-62 243.0 180 67.8
Duzib205G1468 Durio zibethinus HOM05D005362 ORTHO05D006895 9.5e-61 237.3 179 67.6
Thecc.03G104700 Theobroma cacao HOM05D005362 ORTHO05D006895 2.1e-60 236.1 182 66.5
Lj2g0009795 Lotus japonicus HOM05D005362 ORTHO05D006895 4.7e-60 235.0 177 67.8
CiPaw.11G055600 Carya illinoinensis HOM05D005362 ORTHO05D006895 1.8e-59 233.0 180 66.7
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 1.8e-59 233.0 179 66.5
FAN08G0864 Fragaria x ananassa HOM05D005362 ORTHO05D006895 8.9e-59 230.7 178 63.5
Nitab4.5_0003441g0070 Nicotiana tabacum HOM05D005362 ORTHO05D006895 8.9e-59 230.7 180 65.0
Rhsim12G0149500 Rhododendron simsii HOM05D005362 ORTHO05D006895 8.9e-59 230.7 179 65.9
Rhsim12G0149700 Rhododendron simsii HOM05D005362 ORTHO05D006895 8.9e-59 230.7 179 65.9
Gorai.008G199900 Gossypium raimondii HOM05D005362 ORTHO05D006895 1.2e-58 230.3 179 65.4
FAN13G2767 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.5e-58 229.9 178 63.5
Sp2g24260 Schrenkiella parvula HOM05D005362 ORTHO05D006895 1.5e-58 229.9 176 65.9
COL.COLO4_24316 Corchorus olitorius HOM05D005362 ORTHO05D006895 3.4e-58 228.8 175 65.1
Gohir.D12G186500 Gossypium hirsutum HOM05D005362 ORTHO05D006895 3.4e-58 228.8 179 64.8
Nitab4.5_0000939g0040 Nicotiana tabacum HOM05D005362 ORTHO05D006895 4.4e-58 228.4 180 63.9
RcHm_v2.0_Chr7g0224161 Rosa chinensis HOM05D005362 ORTHO05D006895 4.4e-58 228.4 178 62.9
Gohir.A12G183600 Gossypium hirsutum HOM05D005362 ORTHO05D006895 5.7e-58 228.0 179 64.8
THA.LOC104804616 Tarenaya hassleriana HOM05D005362 ORTHO05D006895 5.7e-58 228.0 176 66.5
CSS0010906 Camellia sinensis var. sinensis HOM05D005362 ORTHO05D006895 7.5e-58 227.6 179 65.9
CSS0049665 Camellia sinensis var. sinensis HOM05D005362 ORTHO05D006895 7.5e-58 227.6 179 65.9
Dinv17441 Davidia involucrata HOM05D005362 ORTHO05D006895 1.3e-57 226.9 179 64.2
Lj5P134T43 Lonicera japonica HOM05D005362 ORTHO05D006895 1.7e-57 226.5 179 64.2
Lj1g0020401 Lotus japonicus HOM05D005362 ORTHO05D006895 1.7e-57 226.5 177 65.5
Cc11_g04710 Coffea canephora HOM05D005362 ORTHO05D006895 2.2e-57 226.1 180 64.4
Prupe.5G207600 Prunus persica HOM05D005362 ORTHO05D006895 2.2e-57 226.1 180 62.8
Cfa014169 Carpinus fangiana HOM05D005362 ORTHO05D006895 2.9e-57 225.7 180 65.6
Haze_22893 Corylus avellana HOM05D005362 ORTHO05D006895 3.7e-57 225.3 180 66.1
MSTRG.11331 Avicennia marina HOM05D005362 ORTHO05D006895 4.9e-57 224.9 180 64.4
Oeu052452.1 Olea europaea HOM05D005362 ORTHO05D006895 6.4e-57 224.6 180 64.4
Carub.0008s2165 Capsella rubella HOM05D005362 ORTHO05D006895 8.3e-57 224.2 176 63.1
Actinidia35047 Actinidia chinensis HOM05D005362 ORTHO05D006895 1.1e-56 223.8 179 63.7
Manes.06G082600 Manihot esculenta HOM05D005362 ORTHO05D006895 1.1e-56 223.8 178 61.2
Phvul.007G187600 Phaseolus vulgaris HOM05D005362 ORTHO05D006895 1.1e-56 223.8 177 65.0
AL8G37580 Arabidopsis lyrata HOM05D005362 ORTHO05D006895 3.2e-56 222.2 176 61.9
Thhalv10004006m.g Eutrema salsugineum HOM05D005362 ORTHO05D006895 3.2e-56 222.2 176 63.6
AT5G60960 Arabidopsis thaliana HOM05D005362 ORTHO05D006895 4.1e-56 221.9 176 61.9
Lalb_Chr07g0178371 Lupinus albus HOM05D005362 ORTHO05D006895 4.1e-56 221.9 178 62.9
Aqoxy3G03650 Aquilegia oxysepala HOM05D005362 ORTHO05D006895 7.0e-56 221.1 180 61.7
FvH4_5g29994 Fragaria vesca HOM05D005362 ORTHO05D006895 7.0e-56 221.1 178 61.8
Glyma.20G225100 Glycine max HOM05D005362 ORTHO05D006895 7.0e-56 221.1 175 66.3
FAN18G1237 Fragaria x ananassa HOM05D005362 ORTHO05D006895 9.2e-56 220.7 178 61.8
Solyc03g114920.1 Solanum lycopersicum HOM05D005362 ORTHO05D006895 1.2e-55 220.3 181 61.9
TWI81G0474 Tripterygium wilfordii HOM05D005362 ORTHO05D006895 2.0e-55 219.5 179 62.6
TWI15G0078 Tripterygium wilfordii HOM05D005362 ORTHO05D006895 2.7e-55 219.2 179 63.1
Glyma.10G162500 Glycine max HOM05D005362 ORTHO05D006895 3.5e-55 218.8 176 64.8
SGA_v2.0_scaffold28G11735 Striga asiatica HOM05D005362 ORTHO05D006895 3.5e-55 218.8 180 62.2
Potri.017G133400 Populus trichocarpa HOM05D005362 ORTHO05D006895 4.6e-55 218.4 174 62.6
HanXRQChr05g0154331 Helianthus annuus HOM05D005362 ORTHO05D006895 7.8e-55 217.6 178 61.8
Sc10g0009660 Simmondsia chinensis HOM05D005362 ORTHO05D006895 7.8e-55 217.6 179 61.5
MD14G1214300 Malus domestica HOM05D005362 ORTHO05D006895 1.0e-54 217.2 186 59.7
Hund02565 Selenicereus undatus HOM05D005362 ORTHO05D006895 1.0e-54 217.2 184 63.0
GSVIVG01008125001 Vitis vinifera HOM05D005362 ORTHO05D006895 1.0e-54 217.2 179 64.2
Ca_17613_v3 Cicer arietinum L. HOM05D005362 ORTHO05D006895 1.3e-54 216.9 174 62.1
Peaxi162Scf00201g00422 Petunia axillaris HOM05D005362 ORTHO05D006895 1.3e-54 216.9 173 63.6
AUR62029951 Chenopodium quinoa HOM05D005362 ORTHO05D006895 2.3e-54 216.1 179 61.5
AUR62033752 Chenopodium quinoa HOM05D005362 ORTHO05D006895 2.3e-54 216.1 179 60.9
CAN.G1228.5 Capsicum annuum HOM05D005362 ORTHO05D006895 3.9e-54 215.3 181 61.9
Migut.B00504 Erythranthe guttata HOM05D005362 ORTHO05D006895 3.9e-54 215.3 180 62.2
PGSC0003DMG400024629 Solanum tuberosum HOM05D005362 ORTHO05D006895 3.9e-54 215.3 180 60.6
DCAR_022335 Daucus carota HOM05D005362 ORTHO05D006895 5.0e-54 214.9 176 63.1
PSO017G2138 Papaver somniferum HOM05D005362 ORTHO05D006895 5.0e-54 214.9 180 61.7
TPR.G37431 Trifolium pratense HOM05D005362 ORTHO05D006895 8.6e-54 214.2 175 62.3
Psat7g043680 Pisum sativum HOM05D005362 ORTHO05D006895 4.3e-53 211.8 176 63.1
Aa31LG11G2340 Aethionema arabicum HOM05D005362 ORTHO05D006895 1.2e-52 210.3 178 60.7
CARHR274640 Cardamine hirsuta HOM05D005362 ORTHO05D006895 1.2e-52 210.3 171 61.4
Sabra17G0110200 Salix brachista HOM05D005362 ORTHO05D006895 1.6e-52 209.9 172 61.0
SHI17437 Sapria himalayana HOM05D005362 ORTHO05D006895 1.6e-52 209.9 172 63.4
VMungo0720G1218 Vigna mungo HOM05D005362 ORTHO05D006895 3.6e-52 208.8 169 63.3
Medtr8g094650 Medicago truncatula HOM05D005362 ORTHO05D006895 4.7e-52 208.4 180 60.6
unitig_26.g9670 Utricularia gibba HOM05D005362 ORTHO05D006895 4.7e-52 208.4 174 60.9
Nitab4.5_0010968g0030 Nicotiana tabacum HOM05D005362 ORTHO05D006895 8.9e-51 204.1 179 59.2
QL07p000780 Quercus lobata HOM05D005362 ORTHO05D006895 2.6e-50 202.6 179 60.9
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.1e-48 197.2 159 61.0
EL10Ac5g12946 Beta vulgaris HOM05D005362 ORTHO05D006895 1.4e-48 196.8 175 58.3
Ah.11g048060 Amaranthus hybridus HOM05D005362 ORTHO05D006895 5.4e-48 194.9 178 59.6
Nitab4.5_0012631g0030 Nicotiana tabacum HOM05D005362 ORTHO05D006895 2.7e-47 192.6 179 57.0
Sed0019900 Sechium edule HOM05D005362 ORTHO05D006895 3.5e-47 192.2 179 56.4
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 3.5e-47 192.2 148 62.2
vmacro16484 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 3.5e-47 192.2 154 61.0
MELO3C017241.2 Cucumis melo HOM05D005362 ORTHO05D006895 1.9e-45 186.4 179 54.7
FAN10G2726 Fragaria x ananassa HOM05D005362 ORTHO05D006895 5.6e-45 184.9 157 59.2
Hma1.2p1_0384F.1_g140800 Hydrangea macrophylla HOM05D005362 ORTHO05D006895 7.3e-45 184.5 178 54.5
PSO170G2279 Papaver somniferum HOM05D005362 ORTHO05D006895 2.1e-44 183.0 180 53.9
Lsat_1_v5_gn_5_23641 Lactuca sativa HOM05D005362 ORTHO05D006895 1.1e-43 180.6 178 52.8
BcaC06g33209 Brassica carinata HOM05D005362 ORTHO05D006895 5.2e-43 178.3 176 52.8
CDE10G0094 Ceratophyllum demersum HOM05D005362 ORTHO05D006895 1.2e-42 177.2 180 51.1
vmacro08819 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 1.2e-42 177.2 175 56.0
ClCG06G015530 Citrullus lanatus HOM05D005362 ORTHO05D006895 1.5e-42 176.8 179 53.6
Sopen03g034000 Solanum pennellii HOM05D005362 ORTHO05D006895 2.0e-42 176.4 151 60.3
Cpa.g.sc67.22 Carica papaya HOM05D005362 ORTHO05D006895 5.8e-42 174.9 211 48.3
MD06G1203500 Malus domestica HOM05D005362 ORTHO05D006895 1.3e-41 173.7 138 58.7
CsaV3_1G003420 Cucumis sativus L. HOM05D005362 ORTHO05D006895 1.7e-41 173.3 179 52.5
FAN06G4934 Fragaria x ananassa HOM05D005362 ORTHO05D006895 4.9e-41 171.8 161 54.0
PSO478G3079 Papaver somniferum HOM05D005362 ORTHO05D006895 2.4e-40 169.5 180 51.7
SHI19627 Sapria himalayana HOM05D005362 ORTHO05D006895 3.2e-40 169.1 170 55.3
ECA246G1962 Erigeron canadensis HOM05D005362 ORTHO05D006895 2.7e-39 166.0 175 52.6
PSO017G2639 Papaver somniferum HOM05D005362 ORTHO05D006895 4.6e-39 165.2 180 50.6
A03p46670 Brassica napus HOM05D005362 ORTHO05D006895 1.6e-36 156.8 135 60.0
FAN10G2687 Fragaria x ananassa HOM05D005362 ORTHO05D006895 8.4e-33 144.4 128 57.8
Medtr0265s0020 Medicago truncatula HOM05D005362 ORTHO05D006895 5.1e-22 108.6 108 49.1
Medtr1g058940 Medicago truncatula HOM05D005362 ORTHO05D006895 5.1e-22 108.6 108 49.1
RcHm_v2.0_Chr7g0224181 Rosa chinensis HOM05D005362 ORTHO05D006895 1.3e-20 104.0 94 53.2
Sabra12G0047300 Salix brachista HOM05D007937 ORTHO05D010000 5.4e-16 88.6 161 32.9
Nitab4.5_0003441g0090 Nicotiana tabacum HOM05D005362 ORTHO05D006895 9.3e-16 87.8 66 59.1
ATR0208G029 Amborella trichopoda HOM05D007937 ORTHO05D010000 1.6e-15 87.0 173 31.2
Atru.chr9.504 Acer truncatum HOM05D005362 ORTHO05D006895 3.5e-15 85.9 83 59.0
Potri.012G068400 Populus trichocarpa HOM05D007937 ORTHO05D010000 6.7e-14 81.6 161 31.1
CDE07G0962 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 1.9e-13 80.1 169 28.4
PGR044G2646 Punica granatum HOM05D005362 ORTHO05D006895 7.4e-13 78.2 66 68.2
TWI73G0154 Tripterygium wilfordii HOM05D007937 ORTHO05D010000 1.6e-12 77.0 145 33.1
Eucgr.K02538 Eucalyptus grandis HOM05D005362 ORTHO05D006895 6.2e-12 75.1 63 68.3
CiPaw.05G164900 Carya illinoinensis HOM05D007937 ORTHO05D010000 1.4e-11 73.9 163 31.3
FAN13G0622 Fragaria x ananassa HOM05D005362 ORTHO05D006895 3.1e-11 72.8 175 29.7
FAN18G3292 Fragaria x ananassa HOM05D005362 ORTHO05D006895 4.0e-11 72.4 175 29.7
FvH4_5g13580 Fragaria vesca HOM05D005362 ORTHO05D006895 1.2e-10 70.9 175 29.7
unitig_749.g13427 Utricularia gibba HOM05D005362 ORTHO05D006895 2.6e-10 69.7 78 47.4
ATR0782G126 Amborella trichopoda HOM05D005362 ORTHO05D006895 4.5e-10 68.9 80 52.5
Ciclev10019809m.g Citrus clementina HOM05D005362 ORTHO05D006895 4.5e-10 68.9 62 71.0
Lsat_1_v5_gn_4_109161 Lactuca sativa HOM05D007937 ORTHO05D010000 7.6e-10 68.2 182 29.7
Zm00001eb047840 Zea mays HOM05D007937 ORTHO05D010000 7.6e-10 68.2 125 32.8
DCAR_016813 Daucus carota HOM05D007937 ORTHO05D010000 2.2e-09 66.6 187 30.5
Os10g0422300 Oryza sativa ssp. japonica HOM05D007937 ORTHO05D010000 8.4e-09 64.7 157 29.9
Haze_07650 Corylus avellana HOM05D007937 ORTHO05D010000 2.4e-08 63.2 176 28.4
ATR0618G438 Amborella trichopoda HOM05D005362 ORTHO05D006895 4.2e-08 62.4 66 62.1
RcHm_v2.0_Chr7g0183361 Rosa chinensis HOM05D005362 ORTHO05D006895 2.1e-07 60.1 183 29.0
FAN03G3293 Fragaria x ananassa HOM05D005362 ORTHO05D006895 2.7e-07 59.7 48 66.7
TPR.G31001 Trifolium pratense HOM05D005362 ORTHO05D006895 3.5e-07 59.3 69 44.9
Thhalv10024455m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 1.0e-06 57.8 128 29.7
TAR624G0084 Trochodendron aralioides HOM05D000029 ORTHO05D001395 1.0e-06 57.8 121 28.1
CARHR238580 Cardamine hirsuta HOM05D000001 ORTHO05D000003 1.8e-06 57.0 128 28.1
TAR623G0780 Trochodendron aralioides HOM05D007559 ORTHO05D009642 2.3e-06 56.6 131 26.0
TAR623G1207 Trochodendron aralioides HOM05D007559 ORTHO05D009642 2.3e-06 56.6 131 26.0
TAR623G1276 Trochodendron aralioides HOM05D007559 ORTHO05D009642 2.3e-06 56.6 131 26.0
ECA232G3137 Erigeron canadensis HOM05D007937 ORTHO05D010000 3.9e-06 55.8 88 35.2
PSO384G5041 Papaver somniferum HOM05D000424 ORTHO05D000355 5.1e-06 55.5 130 25.4
FvH4_2g29361 Fragaria vesca HOM05D000001 ORTHO05D000003 8.7e-06 54.7 123 28.5
FAN15G0328 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.7e-06 54.7 123 28.5
FAN16G1411 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.7e-06 54.7 123 28.5
FAN24G2781 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.7e-06 54.7 123 28.5
FAN27G1997 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.7e-06 54.7 123 28.5


User provided reference genes

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