Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 0.0e+00 1860.5 919 100.0
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.9e-134 483.8 583 46.5
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 8.5e-134 482.3 727 40.0
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 2.5e-133 480.7 738 39.7
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 8.0e-132 475.7 722 39.8
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 1.0e-131 475.3 738 39.4
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 1.2e-130 471.9 681 41.3
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.5e-130 471.5 669 42.3
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 2.0e-130 471.1 670 41.2
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 4.4e-130 469.9 671 40.2
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 3.7e-129 466.8 695 41.2
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 8.3e-129 465.7 740 39.3
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.4e-128 464.2 743 39.2
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.1e-128 463.4 681 41.9
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 7.0e-128 462.6 764 38.2
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 2.0e-127 461.1 670 40.4
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 5.9e-127 459.5 670 40.0
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 7.7e-127 459.1 681 40.7
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.0e-126 458.8 676 41.3
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 2.3e-126 457.6 680 40.1
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.0e-126 456.4 579 44.0
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 8.6e-126 455.7 733 40.0
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 8.6e-126 455.7 690 40.3
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.1e-125 455.3 681 41.6
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.5e-125 454.9 359 60.2
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 7.2e-125 452.6 564 45.4
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 9.5e-125 452.2 437 53.3
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 9.5e-125 452.2 687 39.9
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.2e-124 451.8 437 53.5
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 2.1e-124 451.1 611 41.7
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 2.1e-124 451.1 583 44.4
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.8e-124 450.7 681 40.5
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.4e-123 448.4 675 40.7
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.3e-123 447.6 683 40.4
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 5.2e-123 446.4 573 43.5
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 5.2e-123 446.4 728 39.0
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 8.9e-123 445.7 582 43.1
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 1.5e-122 444.9 679 39.9
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 2.0e-122 444.5 675 40.6
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 4.4e-122 443.4 580 44.0
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 4.4e-122 443.4 591 42.6
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 5.7e-122 443.0 658 39.4
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 9.8e-122 442.2 610 42.3
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 1.3e-121 441.8 698 40.4
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 2.2e-121 441.0 930 34.9
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.8e-121 440.7 676 40.2
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 3.7e-121 440.3 712 39.7
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 4.9e-121 439.9 630 41.1
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 4.9e-121 439.9 721 38.0
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 4.9e-121 439.9 734 38.1
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 6.3e-121 439.5 618 42.2
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 8.3e-121 439.1 618 42.2
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.1e-120 438.7 437 51.5
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.1e-120 438.7 581 42.3
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 4.1e-120 436.8 539 45.3
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 5.4e-120 436.4 355 58.6
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 9.2e-120 435.6 681 39.9
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.6e-119 434.9 627 40.4
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 7.8e-119 432.6 709 38.8
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 1.3e-118 431.8 407 53.3
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.7e-118 431.4 907 34.2
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.3e-118 431.0 636 41.5
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 2.3e-118 431.0 696 39.5
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 3.8e-118 430.3 704 38.5
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 5.0e-118 429.9 480 48.1
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 8.6e-118 429.1 566 43.5
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 1.9e-117 427.9 616 39.6
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 1.9e-117 427.9 591 41.3
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 3.3e-117 427.2 617 40.7
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 3.3e-117 427.2 363 56.2
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 5.6e-117 426.4 364 56.3
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 7.3e-117 426.0 596 41.1
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 7.3e-117 426.0 522 45.6
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 9.5e-117 425.6 711 38.7
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 9.5e-117 425.6 617 41.0
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 9.5e-117 425.6 588 42.7
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.6e-116 424.9 405 51.6
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 1.6e-116 424.9 725 39.9
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 2.1e-116 424.5 589 41.3
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 3.6e-116 423.7 591 41.6
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 3.6e-116 423.7 560 43.6
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 3.6e-116 423.7 580 42.2
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 6.1e-116 422.9 601 41.8
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 1.0e-115 422.2 586 41.8
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 1.0e-115 422.2 591 41.5
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 4.0e-115 420.2 589 39.2
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 6.8e-115 419.5 604 40.7
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 6.8e-115 419.5 342 57.6
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.5e-114 418.3 559 41.7
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 2.0e-114 417.9 640 40.3
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 2.6e-114 417.5 628 40.1
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 2.6e-114 417.5 470 49.1
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 7.5e-114 416.0 414 51.7
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 3.7e-113 413.7 698 37.2
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 1.1e-112 412.1 648 38.7
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 1.4e-112 411.8 705 38.0
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 1.9e-112 411.4 575 40.5
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 1.2e-111 408.7 622 41.2
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 2.0e-111 407.9 571 42.7
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 3.0e-110 404.1 351 54.7
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 6.6e-110 402.9 419 49.9
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 8.6e-110 402.5 361 54.6
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 9.5e-109 399.1 409 50.1
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 2.1e-108 397.9 695 36.8
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 3.6e-108 397.1 590 40.2
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 6.2e-108 396.4 603 39.3
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 1.4e-107 395.2 387 50.9
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 2.3e-107 394.4 391 50.9
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 6.8e-107 392.9 345 54.8
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 8.9e-107 392.5 704 37.2
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 3.4e-106 390.6 403 47.9
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 2.8e-100 370.9 301 58.5
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.1e-99 369.0 279 62.4
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 2.3e-99 367.9 353 51.0
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 2.3e-99 367.9 635 36.7
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 4.0e-99 367.1 389 48.3
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.5e-98 365.2 546 41.0
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 5.8e-98 363.2 317 56.5
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 7.5e-98 362.8 695 37.1
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.7e-97 361.7 307 57.7
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.2e-97 361.3 436 44.7
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 1.9e-93 348.2 565 37.5
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 3.6e-92 344.0 407 46.9
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 6.2e-92 343.2 372 46.8
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 5.2e-91 340.1 385 46.5
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 1.9e-88 331.6 516 38.2
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 6.6e-86 323.2 417 42.9
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.5e-85 322.0 428 41.8
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 3.6e-84 317.4 390 41.5
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 4.7e-84 317.0 529 37.4
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 4.9e-81 307.0 664 33.7
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 3.9e-78 297.4 386 42.5
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 1.3e-76 292.4 669 33.2
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 2.4e-72 278.1 319 45.5
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 3.5e-63 247.7 182 63.7
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 3.5e-63 247.7 320 41.2
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.3e-60 239.2 495 34.3
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.4e-59 235.7 186 64.5
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 1.2e-58 232.6 200 56.0
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 4.5e-58 230.7 268 47.4
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.6e-55 222.2 152 69.7
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.9e-54 217.6 229 49.3
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.7e-52 211.1 491 33.4
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 1.8e-51 208.8 424 34.0
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 1.3e-49 202.6 349 33.8
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 2.2e-49 201.8 362 33.7
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.2e-44 185.3 479 28.6
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 5.3e-43 180.6 468 30.1
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.1e-40 172.9 597 28.3
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 5.5e-40 170.6 186 47.8
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 6.7e-38 163.7 149 55.0
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 1.1e-37 162.9 322 31.7
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 7.4e-37 160.2 195 43.1
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 7.0e-27 127.1 91 60.4
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 4.5e-26 124.4 102 54.9
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 3.6e-15 88.2 63 60.3
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 3.7e-12 78.2 65 53.8
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 1.8e-11 75.9 65 47.7
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.0e-10 72.4 124 37.1
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 8.6e-09 67.0 54 59.3
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.0e-06 58.2 46 63.0
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 5.2e-06 57.8 63 39.7
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 8.9e-06 57.0 236 22.5


User provided reference genes

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