Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 7.2e-188 660.6 377 100.0
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 5.9e-89 332.0 409 53.5
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 1.1e-87 327.8 424 56.1
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 2.5e-87 326.6 387 55.8
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 5.5e-87 325.5 427 54.1
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 9.3e-87 324.7 422 54.0
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 9.3e-87 324.7 415 57.3
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 1.2e-86 324.3 395 53.7
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 7.9e-86 321.6 444 50.5
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 7.9e-86 321.6 411 51.3
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 1.0e-85 321.2 420 54.0
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 2.3e-85 320.1 410 54.4
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 3.0e-85 319.7 428 52.3
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 3.9e-85 319.3 421 54.4
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.1e-84 317.8 426 54.5
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 2.5e-84 316.6 433 54.5
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 3.3e-84 316.2 424 55.0
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 7.4e-84 315.1 438 52.1
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 9.7e-84 314.7 431 52.4
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 2.2e-83 313.5 424 55.7
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 2.8e-83 313.2 421 53.4
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 3.7e-83 312.8 455 51.6
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 8.2e-83 311.6 424 53.5
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 8.2e-83 311.6 424 53.5
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 1.1e-82 311.2 444 49.5
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 1.4e-82 310.8 476 48.7
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 1.4e-82 310.8 407 53.8
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.8e-82 310.5 392 54.1
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 4.1e-82 309.3 423 54.1
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 9.0e-82 308.1 429 51.7
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 9.0e-82 308.1 452 49.3
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 4.5e-81 305.8 430 53.7
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 1.3e-80 304.3 387 54.0
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 1.7e-80 303.9 387 56.8
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 2.2e-80 303.5 445 50.8
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 8.5e-80 301.6 476 46.2
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.9e-79 300.4 443 50.3
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 1.9e-79 300.4 505 42.2
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 4.2e-79 299.3 380 53.2
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 5.5e-79 298.9 487 45.4
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 5.5e-79 298.9 418 51.7
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 5.5e-79 298.9 456 47.6
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 5.5e-79 298.9 456 47.6
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 1.2e-78 297.7 431 51.3
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 1.6e-78 297.4 485 44.1
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 3.6e-78 296.2 427 53.4
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 4.6e-78 295.8 498 44.8
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 1.0e-77 294.7 458 47.6
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 1.8e-77 293.9 446 47.1
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 1.8e-77 293.9 428 47.7
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 9.7e-76 288.1 414 51.4
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.3e-75 287.7 392 53.6
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 2.2e-75 287.0 452 45.4
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 2.2e-75 287.0 448 45.1
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 2.8e-75 286.6 449 45.9
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 3.7e-75 286.2 447 45.9
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 4.8e-75 285.8 452 45.1
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 4.8e-75 285.8 449 45.9
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 6.3e-75 285.4 447 45.6
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 8.2e-75 285.0 435 50.6
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 1.8e-74 283.9 545 44.2
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 2.4e-74 283.5 420 51.2
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 6.9e-74 282.0 420 51.9
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 1.5e-73 280.8 510 45.7
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 3.4e-73 279.6 418 49.3
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 4.5e-73 279.3 472 46.0
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 5.9e-73 278.9 470 47.4
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 2.2e-72 276.9 464 46.8
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 2.9e-72 276.6 558 40.0
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 1.9e-71 273.9 506 43.3
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 3.2e-71 273.1 517 45.1
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 5.5e-71 272.3 494 42.3
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 7.2e-71 271.9 460 47.0
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 2.1e-70 270.4 408 47.1
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 4.7e-70 269.2 455 43.3
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 7.9e-70 268.5 486 44.9
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 1.4e-69 267.7 504 41.1
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 3.9e-69 266.2 534 41.8
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 5.2e-69 265.8 496 44.4
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 1.5e-68 264.2 572 40.6
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 5.7e-68 262.3 569 40.2
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 1.2e-65 254.6 467 44.5
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 3.8e-64 249.6 521 42.4
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 1.1e-63 248.1 518 40.2
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 5.5e-63 245.7 531 40.9
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 1.2e-62 244.6 482 40.5
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 3.6e-62 243.0 168 78.6
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 1.8e-61 240.7 538 38.1
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 1.8e-61 240.7 626 35.9
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 5.2e-61 239.2 535 39.8
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.6e-60 236.9 598 37.8
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.3e-59 234.6 618 36.2
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 2.2e-59 233.8 543 37.8
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 4.8e-59 232.6 578 38.4
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 6.3e-59 232.3 595 36.6
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 1.1e-58 231.5 523 39.2
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 4.1e-58 229.6 619 36.7
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 5.3e-58 229.2 619 36.8
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 7.7e-57 225.3 621 35.4
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.6e-54 217.6 256 52.7
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.0e-53 214.9 405 43.7
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 2.3e-53 213.8 397 46.1
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 1.7e-48 197.6 170 65.9
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 4.2e-47 193.0 504 37.9
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 1.6e-46 191.0 309 47.6
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 8.3e-43 178.7 363 37.2
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 1.6e-38 164.5 172 55.2
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 6.1e-38 162.5 94 90.4
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 3.0e-37 160.2 354 42.4
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 1.4e-34 151.4 161 59.0
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 1.8e-34 151.0 174 53.4
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 3.2e-34 150.2 104 80.8
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 3.2e-34 150.2 324 42.0
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 7.8e-33 145.6 95 80.0
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 1.3e-32 144.8 150 58.7
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 8.6e-32 142.1 82 90.2
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 3.4e-28 130.2 300 42.3
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 4.4e-28 129.8 103 73.8
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.2e-26 123.6 357 37.8
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.1e-23 115.2 111 58.6
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 4.0e-21 106.7 175 37.7
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 1.5e-20 104.8 127 52.8
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.9e-19 99.8 63 81.0
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 2.4e-18 97.4 154 44.2
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 1.0e-16 92.0 189 43.4
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 2.3e-16 90.9 53 84.9
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.5e-15 88.2 57 75.4
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.6e-14 84.7 94 46.8
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.0e-12 77.8 111 42.3
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 2.2e-11 74.3 191 35.1
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.2e-11 74.3 99 42.4
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.1e-10 72.0 89 52.8
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 3.0e-08 63.9 166 29.5
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 3.9e-08 63.5 364 26.6
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 3.9e-08 63.5 331 27.5


User provided reference genes

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