Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 3.0e-139 498.4 243 100.0
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.2e-135 486.5 243 97.9
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 5.8e-106 387.9 243 74.9
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 1.3e-105 386.7 243 74.5
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 2.9e-105 385.6 243 73.3
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 6.4e-105 384.4 243 73.3
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.4e-104 383.3 243 72.8
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 2.4e-104 382.5 243 73.7
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.2e-103 380.2 243 72.8
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 2.7e-103 379.0 244 73.0
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.7e-103 379.0 243 72.0
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 3.5e-103 378.6 243 71.6
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 6.0e-103 377.9 243 72.0
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 7.8e-103 377.5 243 71.2
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 1.0e-102 377.1 241 72.2
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 1.7e-102 376.3 244 71.7
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 5.1e-102 374.8 242 72.7
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 1.5e-101 373.2 242 71.5
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 4.3e-101 371.7 245 71.4
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 4.3e-101 371.7 242 71.5
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 5.6e-101 371.3 243 70.8
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 9.6e-101 370.5 243 70.4
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 1.2e-100 370.2 243 69.1
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 1.6e-100 369.8 243 69.5
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 3.6e-100 368.6 243 66.7
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 6.2e-100 367.9 243 69.1
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 1.4e-99 366.7 244 68.4
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 1.4e-99 366.7 241 69.7
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 1.8e-99 366.3 242 68.6
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 1.8e-99 366.3 244 68.4
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.8e-99 366.3 244 68.4
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.8e-99 366.3 243 70.4
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 2.4e-99 365.9 243 70.0
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 5.3e-99 364.8 244 68.9
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 5.3e-99 364.8 244 68.9
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 6.9e-99 364.4 242 70.7
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 1.2e-98 363.6 230 72.6
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 1.5e-98 363.2 244 68.4
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 2.0e-98 362.8 244 68.0
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 2.6e-98 362.5 243 67.5
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 2.6e-98 362.5 243 67.1
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 3.4e-98 362.1 244 68.4
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 4.4e-98 361.7 244 68.4
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 7.6e-98 360.9 243 67.9
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 7.6e-98 360.9 284 62.0
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 1.3e-97 360.1 244 67.6
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 1.3e-97 360.1 244 69.7
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 1.3e-97 360.1 244 68.0
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 2.9e-97 359.0 241 68.0
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 2.9e-97 359.0 244 68.4
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 4.9e-97 358.2 244 69.7
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 4.9e-97 358.2 242 68.2
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 8.4e-97 357.5 241 68.9
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 1.1e-96 357.1 241 68.0
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 1.1e-96 357.1 243 68.3
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 1.4e-96 356.7 241 68.9
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 1.9e-96 356.3 244 68.0
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 1.9e-96 356.3 258 65.1
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 2.4e-96 355.9 242 68.2
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 2.4e-96 355.9 275 61.8
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 4.2e-96 355.1 244 68.9
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 5.4e-96 354.8 243 66.7
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 9.3e-96 354.0 243 68.3
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 9.3e-96 354.0 241 68.0
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 9.3e-96 354.0 242 66.9
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 2.1e-95 352.8 228 71.1
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 2.1e-95 352.8 244 67.2
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 4.6e-95 351.7 243 65.8
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 1.0e-94 350.5 230 70.0
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 1.0e-94 350.5 241 66.0
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 1.0e-94 350.5 244 66.8
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 1.0e-94 350.5 274 60.9
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 1.3e-94 350.1 241 67.2
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 5.1e-94 348.2 242 66.9
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 5.1e-94 348.2 244 66.4
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 8.7e-94 347.4 241 66.0
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 1.1e-93 347.1 295 57.6
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 1.9e-93 346.3 229 71.2
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 2.5e-93 345.9 242 66.5
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 2.5e-93 345.9 244 66.0
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 4.3e-93 345.1 244 66.4
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 5.6e-93 344.7 244 66.4
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 7.3e-93 344.4 242 66.1
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 7.3e-93 344.4 242 66.1
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 3.6e-92 342.0 244 64.8
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 1.3e-89 333.6 253 61.7
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 3.8e-89 332.0 240 62.9
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 2.7e-87 325.9 327 51.4
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 3.9e-86 322.0 210 69.0
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 5.6e-85 318.2 244 61.9
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 2.1e-84 316.2 243 61.3
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 3.7e-84 315.5 214 66.4
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 6.9e-83 311.2 204 69.6
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 2.0e-82 309.7 205 70.7
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 3.8e-81 305.4 252 57.1
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 4.6e-79 298.5 284 51.4
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 2.3e-78 296.2 205 67.8
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 3.7e-76 288.9 250 52.8
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 4.8e-76 288.5 243 57.2
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.1e-75 287.3 300 49.7
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.8e-75 286.6 243 57.2
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 4.2e-72 275.4 213 63.8
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 6.9e-67 258.1 316 43.0
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 1.5e-61 240.4 259 45.6
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 1.7e-60 236.9 247 47.8
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 3.9e-54 215.7 250 46.0
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 1.1e-51 207.6 253 44.7
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 3.1e-51 206.1 240 42.1
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 2.2e-49 199.9 340 37.9
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 3.2e-48 196.1 147 66.7
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.6e-45 186.4 123 72.4
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 2.2e-41 173.3 107 69.2
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 4.1e-35 152.5 136 53.7
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 3.5e-34 149.4 96 71.9
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.2e-33 146.7 83 69.9
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 5.2e-22 109.0 83 63.9
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 5.2e-22 109.0 83 63.9
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 3.4e-21 106.3 70 61.4
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 9.2e-19 98.2 74 64.9
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.8e-14 84.0 95 49.5
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 1.5e-13 80.9 51 70.6
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 7.5e-13 78.6 51 68.6
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 7.5e-13 78.6 51 68.6
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 1.3e-12 77.8 69 52.2
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 7.0e-11 72.0 145 37.2
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 4.6e-10 69.3 73 38.4
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 3.0e-09 66.6 43 65.1
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 1.2e-07 61.2 67 43.3
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 6.2e-07 58.9 36 66.7
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 1.4e-06 57.8 38 63.2
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 2.3e-06 57.0 70 34.3
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 8.9e-06 55.1 65 38.5


User provided reference genes

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