Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 3.2e-273 944.5 480 100.0
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 3.5e-115 419.5 415 56.4
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 2.5e-113 413.3 416 56.2
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 9.7e-113 411.4 372 57.5
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 2.2e-112 410.2 428 54.4
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 2.8e-112 409.8 494 48.8
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 4.8e-112 409.1 448 51.8
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 1.1e-111 407.9 378 58.5
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 6.9e-111 405.2 432 53.2
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 2.0e-110 403.7 422 55.0
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 2.6e-110 403.3 453 53.0
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 4.5e-110 402.5 445 52.8
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 7.7e-110 401.7 393 55.5
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 7.7e-110 401.7 463 50.1
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.0e-109 401.4 348 62.1
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 2.9e-109 399.8 364 59.1
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 5.0e-109 399.1 440 51.1
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 5.0e-109 399.1 377 55.7
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 6.5e-109 398.7 496 49.2
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 8.5e-109 398.3 415 52.5
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 1.1e-108 397.9 391 56.0
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.1e-108 397.9 405 55.8
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 4.2e-108 396.0 421 52.3
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 4.2e-108 396.0 406 56.2
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 7.2e-108 395.2 353 58.9
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 2.7e-107 393.3 450 49.6
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 1.0e-106 391.3 418 53.6
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 1.8e-106 390.6 415 52.0
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.1e-105 387.9 372 52.7
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 1.5e-105 387.5 404 53.5
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 2.0e-105 387.1 372 53.5
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 2.0e-105 387.1 434 52.5
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 2.2e-104 383.6 436 50.9
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 4.8e-104 382.5 437 51.5
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 8.2e-104 381.7 382 55.5
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 1.1e-103 381.3 400 53.8
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 4.1e-103 379.4 480 46.9
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 9.1e-103 378.3 433 51.7
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 1.5e-102 377.5 459 49.7
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 2.0e-102 377.1 363 57.3
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 2.6e-102 376.7 440 50.5
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 4.5e-102 375.9 405 51.9
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 5.9e-102 375.6 434 48.8
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 1.7e-101 374.0 444 50.5
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 1.7e-101 374.0 371 54.4
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.7e-101 374.0 430 48.4
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.9e-101 373.2 443 49.0
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 2.9e-101 373.2 425 49.9
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 8.5e-101 371.7 411 50.6
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 1.1e-100 371.3 401 49.9
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.4e-100 370.9 376 53.5
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 1.9e-100 370.5 330 61.8
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 1.9e-100 370.5 517 44.9
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 4.2e-100 369.4 443 49.2
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 1.2e-99 367.9 446 50.0
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.1e-99 367.1 381 54.1
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 2.7e-99 366.7 438 46.6
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 2.7e-99 366.7 485 45.4
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.7e-99 366.7 497 45.9
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 2.7e-99 366.7 458 48.7
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.6e-99 366.3 367 54.0
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 4.7e-99 365.9 459 46.2
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 3.0e-98 363.2 449 48.6
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 3.0e-98 363.2 369 55.6
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 3.9e-98 362.8 384 51.3
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 5.1e-98 362.5 393 50.6
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 6.7e-98 362.1 384 52.1
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 6.7e-98 362.1 372 53.8
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 8.8e-98 361.7 359 52.1
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 4.4e-97 359.4 354 54.8
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 8.2e-96 355.1 342 56.7
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 3.1e-95 353.2 354 54.5
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 3.1e-95 353.2 366 53.8
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 9.1e-95 351.7 472 46.8
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.2e-94 351.3 430 48.1
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 2.0e-94 350.5 357 52.4
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 3.5e-94 349.7 455 44.4
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 7.7e-94 348.6 479 45.5
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.9e-92 344.0 456 46.7
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 1.8e-90 337.4 415 46.3
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 4.0e-90 336.3 331 56.5
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.3e-88 331.3 438 46.6
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 4.8e-88 329.3 366 49.7
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 1.0e-85 321.6 482 41.7
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 2.9e-85 320.1 354 50.3
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.4e-81 306.2 385 46.8
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 3.7e-80 303.1 401 45.9
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 3.1e-79 300.1 342 52.3
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 1.2e-75 288.1 376 43.9
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.0e-74 283.1 289 53.6
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 1.2e-73 281.6 385 42.6
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 5.4e-71 272.7 304 50.3
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 9.2e-71 271.9 333 52.0
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.2e-70 271.6 305 50.8
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 2.7e-70 270.4 350 47.1
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 3.5e-70 270.0 369 44.7
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 2.3e-69 267.3 284 52.1
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 8.0e-67 258.8 179 70.4
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.0e-66 256.9 188 67.6
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.2e-62 245.0 325 46.5
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.2e-62 245.0 284 50.4
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 1.7e-61 241.1 441 37.4
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.4e-57 226.9 322 46.0
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 9.8e-57 225.3 185 58.9
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 2.9e-56 223.8 274 47.1
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 6.4e-56 222.6 300 46.0
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 4.1e-55 219.9 274 45.3
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 5.4e-55 219.5 284 44.7
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.2e-54 218.4 284 44.4
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 1.2e-54 218.4 274 45.3
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.6e-54 216.5 271 49.1
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 6.6e-53 212.6 179 59.8
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 2.1e-51 207.6 300 46.3
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 2.3e-50 204.1 143 66.4
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 2.3e-50 204.1 295 42.4
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 8.9e-50 202.2 295 42.4
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 1.2e-49 201.8 285 43.2
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.5e-49 201.4 162 60.5
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 7.5e-49 199.1 286 43.0
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.4e-47 194.9 292 40.1
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 9.2e-47 192.2 146 65.1
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 4.6e-46 189.9 275 41.5
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.0e-45 188.7 162 58.6
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 3.0e-45 187.2 162 58.6
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 2.8e-43 180.6 170 52.9
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 3.1e-42 177.2 124 68.5
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 3.2e-39 167.2 165 52.7
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 3.0e-37 160.6 179 49.7
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 3.3e-36 157.1 201 48.8
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 7.6e-33 146.0 274 36.1
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 9.9e-33 145.6 306 33.3
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 1.6e-30 138.3 183 45.4
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 9.6e-28 129.0 432 25.9
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.1e-27 127.9 113 57.5
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 1.4e-26 125.2 140 50.7
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 6.9e-26 122.9 188 39.4
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.4e-23 113.2 166 41.6
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 7.9e-22 109.4 117 48.7
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 3.0e-21 107.5 98 62.2
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.8e-18 98.2 188 35.1
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 3.1e-18 97.4 88 52.3
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 4.0e-18 97.1 209 31.1
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 6.9e-18 96.3 189 34.9
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 1.9e-15 88.2 64 60.9
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.4e-15 87.8 62 62.9
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 7.1e-15 86.3 261 30.3
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 1.0e-13 82.4 46 71.7
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 2.8e-11 74.3 131 38.2
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 4.8e-11 73.6 130 38.5
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 2.9e-08 64.3 88 43.2
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.8e-08 63.9 38 81.6
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 1.6e-06 58.5 110 34.5
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 2.7e-06 57.8 39 69.2
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 3.5e-06 57.4 29 89.7


User provided reference genes

Program Settings