Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004246 Vanilla planifolia HOM05D004035 ORTHO05D004631 7.8e-129 463.8 228 100.0
Lsat_1_v5_gn_3_76401 Lactuca sativa HOM05D004035 ORTHO05D004631 3.2e-74 282.3 184 76.1
GSVIVG01018960001 Vitis vinifera HOM05D004035 ORTHO05D004631 9.4e-74 280.8 184 72.8
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 1.2e-73 280.4 184 73.9
HanXRQChr16g0530441 Helianthus annuus HOM05D004035 ORTHO05D004631 2.1e-73 279.6 184 73.9
TAR376G0366 Trochodendron aralioides HOM05D004035 ORTHO05D004631 2.7e-73 279.3 184 71.7
Actinidia12124 Actinidia chinensis HOM05D004035 ORTHO05D004631 4.6e-73 278.5 184 73.4
Actinidia36560 Actinidia chinensis HOM05D004035 ORTHO05D004631 6.1e-73 278.1 184 72.3
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 1.0e-72 277.3 184 73.9
Os03g0715500 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 1.8e-72 276.6 224 63.8
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 3.0e-72 275.8 183 73.8
Prupe.7G154500 Prunus persica HOM05D004035 ORTHO05D004631 3.9e-72 275.4 184 72.3
ECA246G3379 Erigeron canadensis HOM05D004035 ORTHO05D004631 5.1e-72 275.0 184 73.4
Lj2C453G20 Lonicera japonica HOM05D004035 ORTHO05D004631 6.7e-72 274.6 184 71.7
PSO675G4195 Papaver somniferum HOM05D004035 ORTHO05D004631 8.8e-72 274.2 184 71.7
Solyc07g056660.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 8.8e-72 274.2 184 70.7
Sopen07g030000 Solanum pennellii HOM05D004035 ORTHO05D004631 8.8e-72 274.2 184 70.7
SGA_v2.0_scaffold276G46626 Striga asiatica HOM05D004035 ORTHO05D004631 2.5e-71 272.7 183 73.2
CSS0025574 Camellia sinensis var. sinensis HOM05D004035 ORTHO05D004631 3.3e-71 272.3 184 72.8
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 4.3e-71 271.9 184 71.2
PSO837G0008 Papaver somniferum HOM05D004035 ORTHO05D004631 7.4e-71 271.2 184 73.4
PSO541G3635 Papaver somniferum HOM05D004035 ORTHO05D004631 9.7e-71 270.8 184 71.2
QL06p046086 Quercus lobata HOM05D004035 ORTHO05D004631 1.7e-70 270.0 184 70.1
PSO017G4184 Papaver somniferum HOM05D004035 ORTHO05D004631 2.2e-70 269.6 184 71.7
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea HOM05D004035 ORTHO05D004631 2.8e-70 269.2 184 72.3
CAN.G1003.4 Capsicum annuum HOM05D004035 ORTHO05D004631 2.8e-70 269.2 184 70.1
Cc03_g03620 Coffea canephora HOM05D004035 ORTHO05D004631 3.7e-70 268.9 184 70.1
RcHm_v2.0_Chr2g0101101 Rosa chinensis HOM05D004035 ORTHO05D004631 3.7e-70 268.9 184 69.0
Sc03g0002970 Simmondsia chinensis HOM05D004035 ORTHO05D004631 3.7e-70 268.9 184 71.2
RcHm_v2.0_Chr2g0101581 Rosa chinensis HOM05D004035 ORTHO05D004631 4.8e-70 268.5 184 69.0
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea HOM05D004035 ORTHO05D004631 8.2e-70 267.7 184 71.7
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 8.2e-70 267.7 184 69.6
CANSAT01G0227 Cannabis sativa HOM05D004035 ORTHO05D004631 1.1e-69 267.3 184 69.0
Ca_24847_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 1.1e-69 267.3 184 71.2
Ca_22279_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 1.4e-69 266.9 184 70.7
Psat4g092560 Pisum sativum HOM05D004035 ORTHO05D004631 1.4e-69 266.9 184 70.1
Manes.02G093700 Manihot esculenta HOM05D004035 ORTHO05D004631 1.8e-69 266.5 184 71.7
FvH4_1g13311 Fragaria vesca HOM05D004035 ORTHO05D004631 3.1e-69 265.8 184 68.5
MD15G1261900 Malus domestica HOM05D004035 ORTHO05D004631 3.1e-69 265.8 184 69.0
Rhsim02G0182400 Rhododendron simsii HOM05D004035 ORTHO05D004631 4.1e-69 265.4 183 70.5
CDE09G0689 Ceratophyllum demersum HOM05D004035 ORTHO05D004631 5.3e-69 265.0 182 68.1
LjContig00448g0016984 Lotus japonicus HOM05D004035 ORTHO05D004631 5.3e-69 265.0 184 70.7
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 5.3e-69 265.0 184 70.1
Eucgr.H01269 Eucalyptus grandis HOM05D004035 ORTHO05D004631 6.9e-69 264.6 184 69.6
Thecc.01G133800 Theobroma cacao HOM05D004035 ORTHO05D004631 6.9e-69 264.6 184 70.7
Duzib147G1708 Durio zibethinus HOM05D004035 ORTHO05D004631 9.1e-69 264.2 184 70.7
MD02G1147600 Malus domestica HOM05D004035 ORTHO05D004631 9.1e-69 264.2 184 67.9
Migut.H00988 Erythranthe guttata HOM05D004035 ORTHO05D004631 1.2e-68 263.8 184 67.9
Glyma.11G068300 Glycine max HOM05D004035 ORTHO05D004631 1.2e-68 263.8 184 69.6
Gohir.A11G184400 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.2e-68 263.8 184 70.7
Gohir.D11G190900 Gossypium hirsutum HOM05D004035 ORTHO05D004631 2.0e-68 263.1 184 70.7
Gorai.007G203400 Gossypium raimondii HOM05D004035 ORTHO05D004631 2.0e-68 263.1 184 70.7
Psat2g159680 Pisum sativum HOM05D004035 ORTHO05D004631 2.0e-68 263.1 184 69.6
Lj1g0016074 Lotus japonicus HOM05D004035 ORTHO05D004631 2.6e-68 262.7 184 70.1
TPR.G22289 Trifolium pratense HOM05D004035 ORTHO05D004631 2.6e-68 262.7 184 70.7
TPR.G34978 Trifolium pratense HOM05D004035 ORTHO05D004631 3.4e-68 262.3 184 69.0
Glyma.01G176000 Glycine max HOM05D004035 ORTHO05D004631 4.5e-68 261.9 184 69.0
Lalb_Chr09g0322391 Lupinus albus HOM05D004035 ORTHO05D004631 5.9e-68 261.5 184 68.5
Phvul.002G030300 Phaseolus vulgaris HOM05D004035 ORTHO05D004631 5.9e-68 261.5 184 69.0
TWI73G0243 Tripterygium wilfordii HOM05D004035 ORTHO05D004631 5.9e-68 261.5 184 67.9
FAN19G0080 Fragaria x ananassa HOM05D004035 ORTHO05D004631 7.7e-68 261.2 185 68.1
AUR62004050 Chenopodium quinoa HOM05D004035 ORTHO05D004631 1.0e-67 260.8 184 67.4
Lj2g0023524 Lotus japonicus HOM05D004035 ORTHO05D004631 1.0e-67 260.8 184 69.6
Sopen02g029920 Solanum pennellii HOM05D004035 ORTHO05D004631 1.0e-67 260.8 184 67.4
Medtr8g077680 Medicago truncatula HOM05D004035 ORTHO05D004631 1.7e-67 260.0 184 70.1
Solyc02g085220.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 2.2e-67 259.6 184 67.9
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 2.9e-67 259.2 185 67.0
AUR62007565 Chenopodium quinoa HOM05D004035 ORTHO05D004631 8.5e-67 257.7 184 66.8
VMungo1215G2866 Vigna mungo HOM05D004035 ORTHO05D004631 1.1e-66 257.3 184 67.4
Lalb_Chr16g0388281 Lupinus albus HOM05D004035 ORTHO05D004631 1.4e-66 256.9 189 66.1
COL.COLO4_22081 Corchorus olitorius HOM05D004035 ORTHO05D004631 2.5e-66 256.1 184 69.0
Atru.chr3.574 Acer truncatum HOM05D004035 ORTHO05D004631 3.2e-66 255.8 184 67.9
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 3.2e-66 255.8 184 69.0
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 3.2e-66 255.8 184 69.0
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 4.2e-66 255.4 184 70.1
Nn7g37554 Nelumbo nucifera HOM05D004035 ORTHO05D004631 5.5e-66 255.0 183 67.8
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 7.2e-66 254.6 196 63.8
Gohir.A02G165200 Gossypium hirsutum HOM05D004035 ORTHO05D004631 7.2e-66 254.6 185 65.9
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 7.2e-66 254.6 185 68.6
Sed0003321 Sechium edule HOM05D004035 ORTHO05D004631 1.2e-65 253.8 184 68.5
EL10Ac6g15563 Beta vulgaris HOM05D004035 ORTHO05D004631 3.6e-65 252.3 184 64.1
Ciclev10024797m.g Citrus clementina HOM05D004035 ORTHO05D004631 6.1e-65 251.5 184 67.9
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 6.1e-65 251.5 190 65.3
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 1.4e-64 250.4 184 68.5
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea HOM05D004035 ORTHO05D004631 2.3e-64 249.6 184 66.3
Ah.02g125200 Amaranthus hybridus HOM05D004035 ORTHO05D004631 3.0e-64 249.2 184 64.7
FAN26G1872 Fragaria x ananassa HOM05D004035 ORTHO05D004631 3.9e-64 248.8 215 58.6
ATR0743G236 Amborella trichopoda HOM05D004035 ORTHO05D004631 1.1e-63 247.3 184 64.7
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 1.5e-63 246.9 184 65.2
DCAR_025943 Daucus carota HOM05D004035 ORTHO05D004631 1.5e-63 246.9 191 64.9
AL7G14420 Arabidopsis lyrata HOM05D004035 ORTHO05D004631 2.6e-63 246.1 184 64.7
Oeu042265.1 Olea europaea HOM05D004035 ORTHO05D004631 2.6e-63 246.1 205 60.5
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea HOM05D004035 ORTHO05D004631 5.7e-63 245.0 184 65.2
CARHR244970 Cardamine hirsuta HOM05D004035 ORTHO05D004631 7.4e-63 244.6 184 64.1
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 1.3e-62 243.8 184 66.3
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 1.7e-62 243.4 183 64.5
PGR102G3072 Punica granatum HOM05D004035 ORTHO05D004631 2.2e-62 243.0 197 62.9
Thhalv10024305m.g Eutrema salsugineum HOM05D004035 ORTHO05D004631 2.8e-62 242.7 184 63.0
A03p64370 Brassica napus HOM05D004035 ORTHO05D004631 3.7e-62 242.3 183 63.9
BraA03t15502Z Brassica rapa HOM05D004035 ORTHO05D004631 3.7e-62 242.3 183 63.9
BolC7t46602H Brassica oleracea HOM05D004035 ORTHO05D004631 8.2e-62 241.1 183 63.9
Sp7g34290 Schrenkiella parvula HOM05D004035 ORTHO05D004631 1.1e-61 240.7 184 63.0
BcaB03g12382 Brassica carinata HOM05D004035 ORTHO05D004631 1.4e-61 240.4 184 63.0
C07p61810 Brassica napus HOM05D004035 ORTHO05D004631 1.8e-61 240.0 183 63.4
BolC3t20256H Brassica oleracea HOM05D004035 ORTHO05D004631 1.2e-60 237.3 181 64.6
DCAR_017291 Daucus carota HOM05D004035 ORTHO05D004631 3.5e-60 235.7 195 61.5
Aa31LG6G13430 Aethionema arabicum HOM05D004035 ORTHO05D004631 4.5e-60 235.3 183 61.7
A08p22280 Brassica napus HOM05D004035 ORTHO05D004631 5.0e-59 231.9 184 62.0
Thecc.01G036000 Theobroma cacao HOM05D004035 ORTHO05D004631 1.1e-58 230.7 166 68.7
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 5.5e-58 228.4 185 61.1
Hund16431 Selenicereus undatus HOM05D004035 ORTHO05D004631 8.0e-57 224.6 166 62.7
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 2.3e-56 223.0 183 61.7
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 1.3e-54 217.2 185 59.5
SMO145G0075 Selaginella moellendorffii HOM05D004035 ORTHO05D004631 3.7e-54 215.7 183 55.2
Mapoly0160s0027 Marchantia polymorpha HOM05D004035 ORTHO05D004631 1.8e-53 213.4 183 54.1
CiPaw.01G038000 Carya illinoinensis HOM05D004035 ORTHO05D004631 1.1e-45 187.6 184 54.3
C03p80030 Brassica napus HOM05D004035 ORTHO05D004631 4.1e-45 185.7 167 58.7
Dinv39986 Davidia involucrata HOM05D004035 ORTHO05D004631 1.2e-44 184.1 184 55.4
vmacro11086 Vaccinium macrocarpon HOM05D004035 ORTHO05D004631 4.5e-44 182.2 196 53.1
Cfa004306 Carpinus fangiana HOM05D004035 ORTHO05D004631 5.9e-44 181.8 184 56.0
SalBow8G0583 Salvia bowleyana HOM05D004035 ORTHO05D004631 7.7e-44 181.4 184 55.4
Ca_22265_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 2.2e-43 179.9 184 53.8
CsaV3_4G005000 Cucumis sativus L. HOM05D004035 ORTHO05D004631 5.0e-43 178.7 118 71.2
Peaxi162Scf00366g00121 Petunia axillaris HOM05D004035 ORTHO05D004631 5.0e-43 178.7 184 53.8
Nitab4.5_0001385g0050 Nicotiana tabacum HOM05D004035 ORTHO05D004631 8.5e-43 177.9 184 53.8
CBR_g34968 Chara braunii HOM05D004035 ORTHO05D004631 1.1e-42 177.6 186 46.2
Lsat_1_v5_gn_4_152080 Lactuca sativa HOM05D004035 ORTHO05D004631 8.0e-41 171.4 183 51.4
Cpa.g.sc1294.3 Carica papaya HOM05D004035 ORTHO05D004631 8.3e-38 161.4 114 67.5
CsaV3_UNG172360 Cucumis sativus L. HOM05D004035 ORTHO05D004631 1.7e-35 153.7 114 65.8
BcaC01g00456 Brassica carinata HOM05D004035 ORTHO05D004631 2.9e-35 152.9 187 48.1
Oeu033646.1 Olea europaea HOM05D004035 ORTHO05D004631 1.4e-32 144.1 165 49.7
Haze_15090 Corylus avellana HOM05D004035 ORTHO05D004631 1.5e-31 140.6 184 47.3
SHI32097 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-24 116.7 134 47.8
MBI07_g05961_MAGBIO Magnolia biondii HOM05D000455 ORTHO05D000434 5.8e-23 112.1 70 75.7
TPR.G13573 Trifolium pratense HOM05D004035 ORTHO05D004631 5.8e-23 112.1 87 65.5
TPR.G13579 Trifolium pratense HOM05D004035 ORTHO05D004631 9.8e-23 111.3 96 60.4
MBI07_g11484_MAGBIO Magnolia biondii HOM05D004035 ORTHO05D004631 7.0e-21 105.1 88 60.2
Cpa.g.sc202.3 Carica papaya HOM05D004035 ORTHO05D004631 1.6e-20 104.0 70 70.0
SEGI_00418 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 2.7e-20 103.2 69 69.6
CsaV3_4G004990 Cucumis sativus L. HOM05D004035 ORTHO05D004631 8.9e-08 61.6 44 65.9
unitig_52.g17587 Utricularia gibba HOM05D004035 ORTHO05D004631 1.2e-07 61.2 57 56.1
EL10Ac8g19470 Beta vulgaris HOM05D005380 ORTHO05D006601 6.4e-06 55.5 197 27.4


User provided reference genes

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