Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 2.1e-194 682.2 336 100.0
HPP92_003898 Vanilla planifolia HOM05D006724 ORTHO05D008514 9.3e-179 630.2 315 97.8
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 1.1e-115 420.6 327 63.6
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 1.4e-113 413.7 297 65.0
CANSAT35G1416 Cannabis sativa HOM05D006724 ORTHO05D008514 2.3e-113 412.9 306 64.4
Hma1.2p1_0416F.1_g148420 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 3.0e-113 412.5 313 63.3
Actinidia18778 Actinidia chinensis HOM05D006724 ORTHO05D008514 5.2e-113 411.8 326 62.0
Dinv14945 Davidia involucrata HOM05D006724 ORTHO05D008514 8.8e-113 411.0 319 63.6
Cfa020617 Carpinus fangiana HOM05D006724 ORTHO05D008514 2.6e-112 409.5 311 64.3
MD11G1255900 Malus domestica HOM05D006724 ORTHO05D008514 2.6e-112 409.5 292 65.4
PSO832G3136 Papaver somniferum HOM05D006724 ORTHO05D008514 1.3e-111 407.1 318 62.9
QL08p023685 Quercus lobata HOM05D006724 ORTHO05D008514 2.8e-111 406.0 310 64.2
CiPaw.11G166800 Carya illinoinensis HOM05D006724 ORTHO05D008514 6.3e-111 404.8 289 65.7
RcHm_v2.0_Chr5g0032321 Rosa chinensis HOM05D006724 ORTHO05D008514 2.4e-110 402.9 261 69.3
Psat4g169400 Pisum sativum HOM05D006724 ORTHO05D008514 4.1e-110 402.1 298 64.1
CAN.G162.28 Capsicum annuum HOM05D006724 ORTHO05D008514 5.4e-110 401.7 321 59.8
FvH4_3g19250 Fragaria vesca HOM05D006724 ORTHO05D008514 5.4e-110 401.7 261 68.6
FAN11G3114 Fragaria x ananassa HOM05D006724 ORTHO05D008514 5.4e-110 401.7 261 68.6
GSVIVG01014275001 Vitis vinifera HOM05D006724 ORTHO05D008514 5.4e-110 401.7 255 71.8
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 1.6e-109 400.2 288 63.5
Eucgr.F01176 Eucalyptus grandis HOM05D006724 ORTHO05D008514 2.7e-109 399.4 260 68.5
PGSC0003DMG400012400 Solanum tuberosum HOM05D006724 ORTHO05D008514 2.7e-109 399.4 313 61.0
Prupe.4G173900 Prunus persica HOM05D006724 ORTHO05D008514 3.5e-109 399.1 328 59.1
Sc03g0010250 Simmondsia chinensis HOM05D006724 ORTHO05D008514 7.7e-109 397.9 300 61.3
Solyc07g062750.4 Solanum lycopersicum HOM05D006724 ORTHO05D008514 1.3e-108 397.1 316 60.1
Sopen07g030980 Solanum pennellii HOM05D006724 ORTHO05D008514 1.3e-108 397.1 314 60.2
EL10Ac4g08255 Beta vulgaris HOM05D006724 ORTHO05D008514 1.1e-107 394.0 320 59.1
Aqoxy4G00591 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 1.6e-106 390.2 263 69.2
arahy.Tifrunner.gnm1.ann1.WDE0T2 Arachis hypogaea HOM05D006724 ORTHO05D008514 1.6e-106 390.2 319 58.9
C05p52090 Brassica napus HOM05D006724 ORTHO05D008514 2.1e-106 389.8 286 61.9
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 2.1e-106 389.8 306 60.1
Gorai.002G066900 Gossypium raimondii HOM05D006724 ORTHO05D008514 2.8e-106 389.4 306 60.8
arahy.Tifrunner.gnm1.ann1.N2BE0G Arachis hypogaea HOM05D006724 ORTHO05D008514 6.1e-106 388.3 319 59.2
CSS0014927 Camellia sinensis var. sinensis HOM05D006724 ORTHO05D008514 6.1e-106 388.3 320 59.4
BolC5t33894H Brassica oleracea HOM05D006724 ORTHO05D008514 8.0e-106 387.9 286 61.5
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 8.0e-106 387.9 287 64.5
A05p34310 Brassica napus HOM05D006724 ORTHO05D008514 1.4e-105 387.1 282 62.1
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 1.4e-105 387.1 318 59.1
Glyma.06G234800 Glycine max HOM05D006724 ORTHO05D008514 2.3e-105 386.3 320 60.6
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 2.3e-105 386.3 260 69.2
BcaB06g29538 Brassica carinata HOM05D006724 ORTHO05D008514 3.0e-105 386.0 286 61.9
BraA05t22252Z Brassica rapa HOM05D006724 ORTHO05D008514 3.0e-105 386.0 280 62.1
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 3.0e-105 386.0 313 62.0
Aqoxy4G00685 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 1.5e-104 383.6 263 68.1
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 1.5e-104 383.6 307 59.6
ClCG11G017740 Citrullus lanatus HOM05D006724 ORTHO05D008514 3.4e-104 382.5 261 63.2
FAN21G1177 Fragaria x ananassa HOM05D006724 ORTHO05D008514 3.4e-104 382.5 303 59.1
PGR083G0421 Punica granatum HOM05D006724 ORTHO05D008514 4.4e-104 382.1 328 57.3
FAN25G2812 Fragaria x ananassa HOM05D006724 ORTHO05D008514 7.5e-104 381.3 296 60.8
Rhsim04G0022800 Rhododendron simsii HOM05D006724 ORTHO05D008514 9.8e-104 380.9 327 58.1
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 1.3e-103 380.6 279 63.1
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 1.3e-103 380.6 259 66.0
CARHR090120 Cardamine hirsuta HOM05D006724 ORTHO05D008514 2.2e-103 379.8 281 61.2
Cc05_g11660 Coffea canephora HOM05D006724 ORTHO05D008514 2.2e-103 379.8 273 63.7
DCAR_017120 Daucus carota HOM05D006724 ORTHO05D008514 2.2e-103 379.8 260 67.3
Duzib213G0893 Durio zibethinus HOM05D006724 ORTHO05D008514 2.2e-103 379.8 336 56.5
CsaV3_4G033360 Cucumis sativus L. HOM05D006724 ORTHO05D008514 2.8e-103 379.4 298 57.4
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 3.7e-103 379.0 259 65.3
Potri.011G141300 Populus trichocarpa HOM05D006724 ORTHO05D008514 1.1e-102 377.5 263 64.6
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 1.4e-102 377.1 263 63.9
MELO3C025618.2 Cucumis melo HOM05D006724 ORTHO05D008514 1.8e-102 376.7 261 62.1
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 2.4e-102 376.3 263 63.1
HanXRQChr12g0364011 Helianthus annuus HOM05D006724 ORTHO05D008514 2.4e-102 376.3 290 61.0
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 9.2e-102 374.4 263 63.5
AUR62019487 Chenopodium quinoa HOM05D006724 ORTHO05D008514 3.5e-101 372.5 274 63.5
Sed0012116 Sechium edule HOM05D006724 ORTHO05D008514 5.9e-101 371.7 298 55.7
Ah.04g164500 Amaranthus hybridus HOM05D006724 ORTHO05D008514 1.3e-100 370.5 293 60.1
Nitab4.5_0000246g0080 Nicotiana tabacum HOM05D006724 ORTHO05D008514 6.6e-100 368.2 365 52.1
SGA_v2.0_scaffold34G13794 Striga asiatica HOM05D006724 ORTHO05D008514 2.5e-99 366.3 341 55.4
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 2.5e-99 366.3 244 68.4
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 4.3e-99 365.5 260 64.6
Sabra11G0126900 Salix brachista HOM05D006724 ORTHO05D008514 6.1e-98 361.7 286 59.1
Migut.M00774 Erythranthe guttata HOM05D006724 ORTHO05D008514 1.8e-97 360.1 285 60.7
Nitab4.5_0000831g0090 Nicotiana tabacum HOM05D006724 ORTHO05D008514 2.3e-97 359.8 308 58.1
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 8.9e-97 357.8 246 65.4
Manes.03G104800 Manihot esculenta HOM05D006724 ORTHO05D008514 1.2e-96 357.5 260 61.9
MSTRG.15243 Avicennia marina HOM05D006724 ORTHO05D008514 2.9e-95 352.8 311 54.7
Peaxi162Scf00069g01835 Petunia axillaris HOM05D006724 ORTHO05D008514 6.4e-95 351.7 251 64.1
Lsat_1_v5_gn_9_98661 Lactuca sativa HOM05D006724 ORTHO05D008514 3.2e-94 349.4 331 53.8
SalBow8G1625 Salvia bowleyana HOM05D006724 ORTHO05D008514 3.2e-94 349.4 352 52.8
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 2.7e-93 346.3 302 55.0
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 2.8e-90 336.3 244 64.3
Atru.chr2.2388 Acer truncatum HOM05D006724 ORTHO05D008514 8.0e-90 334.7 247 64.4
Gohir.D01G047400 Gossypium hirsutum HOM05D006724 ORTHO05D008514 1.1e-89 334.3 306 54.9
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 2.3e-89 333.2 283 54.1
vmacro09520 Vaccinium macrocarpon HOM05D006724 ORTHO05D008514 8.9e-89 331.3 299 54.2
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 4.1e-86 322.4 257 57.2
TWI32G0858 Tripterygium wilfordii HOM05D006724 ORTHO05D008514 9.2e-86 321.2 318 50.9
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 4.3e-83 312.4 245 58.0
DCAR_013127 Daucus carota HOM05D006724 ORTHO05D008514 4.3e-83 312.4 336 46.4
Mapoly0005s0020 Marchantia polymorpha HOM05D006724 ORTHO05D008514 6.2e-82 308.5 274 52.9
Pp3c27_5050 Physcomitrium patens HOM05D006724 ORTHO05D008514 1.1e-81 307.8 261 53.3
Gohir.A01G060866 Gossypium hirsutum HOM05D006724 ORTHO05D008514 1.8e-81 307.0 207 65.7
AUR62036149 Chenopodium quinoa HOM05D006724 ORTHO05D008514 8.9e-81 304.7 210 64.3
CBR_g4826 Chara braunii HOM05D000829 ORTHO05D008514 5.4e-78 295.4 264 51.1
SMO367G0863 Selaginella moellendorffii HOM05D006724 ORTHO05D008514 2.1e-77 293.5 266 54.1
Hma1.2p1_0416F.1_g148440 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 8.1e-74 281.6 177 70.6
Ca_07350_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 2.0e-64 250.4 225 52.9
Gohir.A01G060932 Gossypium hirsutum HOM05D006724 ORTHO05D008514 9.9e-64 248.1 306 45.4
FAN16G1823 Fragaria x ananassa HOM05D006724 ORTHO05D008514 1.2e-61 241.1 346 41.9
CDE08G0827 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 4.6e-53 212.6 151 62.9
unitig_86.g29838 Utricularia gibba HOM05D006724 ORTHO05D008514 3.3e-51 206.5 158 60.8
ATR0602G031 Amborella trichopoda HOM05D006724 ORTHO05D008514 1.3e-50 204.5 150 66.7
Nn1g04264 Nelumbo nucifera HOM05D006724 ORTHO05D008514 4.0e-49 199.5 137 62.8
arahy.Tifrunner.gnm1.ann1.60K44K Arachis hypogaea HOM05D006724 ORTHO05D008514 9.3e-46 188.3 188 51.1
Thhalv10021514m.g Eutrema salsugineum HOM05D006724 ORTHO05D008514 1.4e-41 174.5 286 38.1
Hund22831 Selenicereus undatus HOM05D006724 ORTHO05D008514 3.8e-39 166.4 111 66.7
Hund22832 Selenicereus undatus HOM05D006724 ORTHO05D008514 8.7e-36 155.2 170 45.9
TAR627G0912 Trochodendron aralioides HOM05D006724 ORTHO05D008514 4.5e-32 142.9 115 60.0
arahy.Tifrunner.gnm1.ann1.E3N302 Arachis hypogaea HOM05D006724 ORTHO05D008514 6.1e-29 132.5 151 45.0
Hma1.2p1_0416F.1_g148430 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 3.7e-26 123.2 85 64.7
Oeu019299.2 Olea europaea HOM05D006724 ORTHO05D008514 4.8e-26 122.9 149 49.0
Os06g0353400 Oryza sativa ssp. japonica HOM05D006724 ORTHO05D008514 1.1e-25 121.7 160 45.0
Nn1g07335 Nelumbo nucifera HOM05D006724 ORTHO05D008514 1.9e-22 110.9 66 81.8
CDE04G1798 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.7e-18 97.8 242 28.5
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 4.1e-17 93.2 204 27.9
CDE07G1185 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 4.1e-17 93.2 220 27.7
Eucgr.G03212 Eucalyptus grandis HOM05D005005 ORTHO05D006178 4.1e-17 93.2 203 29.1
CiPaw.14G111500 Carya illinoinensis HOM05D005005 ORTHO05D006178 9.1e-17 92.0 207 27.5
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 9.1e-17 92.0 208 28.4
Zm00001eb129080 Zea mays HOM05D005005 ORTHO05D006178 9.1e-17 92.0 203 28.1
TAR633G0536 Trochodendron aralioides HOM05D005005 ORTHO05D006178 1.2e-16 91.7 221 25.8
Hund07434 Selenicereus undatus HOM05D005005 ORTHO05D006178 1.5e-16 91.3 203 27.6
CANSAT54G2608 Cannabis sativa HOM05D005005 ORTHO05D006178 2.0e-16 90.9 203 28.1
Eucgr.J00681 Eucalyptus grandis HOM05D005005 ORTHO05D006178 2.0e-16 90.9 205 28.3
PGR119G1568 Punica granatum HOM05D005005 ORTHO05D006178 2.6e-16 90.5 214 27.1
Ca_24305_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 4.5e-16 89.7 63 71.4
Os01g0280000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 5.9e-16 89.4 218 26.1
CDE02G0934 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 7.7e-16 89.0 62 58.1
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 7.7e-16 89.0 203 27.6
QL01p016772 Quercus lobata HOM05D005005 ORTHO05D006178 1.0e-15 88.6 203 27.6
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 1.0e-15 88.6 203 27.6
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 1.3e-15 88.2 205 28.3
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 1.3e-15 88.2 208 26.9
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 1.3e-15 88.2 204 26.0
GSVIVG01037328001 Vitis vinifera HOM05D005005 ORTHO05D006178 1.3e-15 88.2 238 25.6
SalBow6G1153 Salvia bowleyana HOM05D005005 ORTHO05D006178 1.7e-15 87.8 203 26.6
SalBow6G1292 Salvia bowleyana HOM05D005005 ORTHO05D006178 1.7e-15 87.8 203 26.6
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 2.9e-15 87.0 203 27.1
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 5.0e-15 86.3 203 27.1
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 1.1e-14 85.1 203 26.6
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.1e-14 85.1 223 24.7
Migut.N01858 Erythranthe guttata HOM05D005005 ORTHO05D006178 2.5e-14 84.0 202 28.2
HPP92_021193 Vanilla planifolia HOM05D005005 ORTHO05D006178 2.5e-14 84.0 203 27.1
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 3.2e-14 83.6 310 23.9
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 5.5e-14 82.8 233 26.2
Ciclev10027071m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.2e-13 81.6 223 24.7
Ciclev10027488m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.2e-13 81.6 223 24.7
SGA_v2.0_scaffold232G43481 Striga asiatica HOM05D005005 ORTHO05D006178 4.7e-13 79.7 181 26.5
SMO367G0260 Selaginella moellendorffii HOM05D005005 ORTHO05D006178 1.0e-12 78.6 206 24.8
Ciclev10027527m.g Citrus clementina HOM05D005005 ORTHO05D006178 3.9e-12 76.6 207 28.0
unitig_86.g29839 Utricularia gibba HOM05D006724 ORTHO05D008514 2.0e-11 74.3 67 49.3
PRCOL_00004087 Prasinoderma coloniale HOM05D000406 ORTHO05D003425 5.7e-11 72.8 208 26.0
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 9.7e-11 72.0 202 26.2
Cc04_g14120 Coffea canephora HOM05D006724 ORTHO05D008514 1.4e-09 68.2 43 76.7
Psat7g158200 Pisum sativum HOM05D005005 ORTHO05D006178 7.7e-08 62.4 147 25.9
SGA_v2.0_scaffold79G25606 Striga asiatica HOM05D006724 ORTHO05D008514 1.5e-06 58.2 34 67.6
Psat7g158320 Pisum sativum HOM05D005005 ORTHO05D006178 5.5e-06 56.2 147 24.5


User provided reference genes

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