Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003270 Vanilla planifolia HOM05D003975 ORTHO05D009762 0.0e+00 1287.7 994 100.0
Os10g0116000 Oryza sativa ssp. japonica HOM05D003975 ORTHO05D009762 1.1e-41 176.4 409 46.7
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 2.3e-31 142.1 510 32.9
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 7.3e-30 137.1 573 30.5
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 5.8e-27 127.5 510 31.0
Manes.15G055100 Manihot esculenta HOM05D003975 ORTHO05D009762 1.3e-26 126.3 294 35.0
Sabra15G0045800 Salix brachista HOM05D003975 ORTHO05D009762 1.9e-25 122.5 506 32.4
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 3.2e-25 121.7 501 30.9
Sabra15G0031500 Salix brachista HOM05D003975 ORTHO05D009762 2.1e-24 119.0 510 32.9
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 3.5e-24 118.2 326 29.4
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 2.3e-23 115.5 545 31.4
SGA_v2.0_scaffold2G01188 Striga asiatica HOM05D003975 ORTHO05D009762 3.9e-23 114.8 245 30.2
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 1.9e-22 112.5 263 33.8
Cfa008191 Carpinus fangiana HOM05D003975 ORTHO05D009762 7.3e-22 110.5 229 33.6
Eucgr.D00222 Eucalyptus grandis HOM05D003975 ORTHO05D009762 7.3e-22 110.5 229 32.8
AL8G39200 Arabidopsis lyrata HOM05D003975 ORTHO05D009762 8.1e-21 107.1 274 30.3
ECA233G1567 Erigeron canadensis HOM05D003975 ORTHO05D009762 3.1e-20 105.1 545 33.8
Sabra15G0052100 Salix brachista HOM05D003975 ORTHO05D009762 5.2e-20 104.4 510 33.1
Haze_13863 Corylus avellana HOM05D003975 ORTHO05D009762 7.6e-19 100.5 221 33.0
Lsat_1_v5_gn_8_8880 Lactuca sativa HOM05D003975 ORTHO05D009762 7.6e-19 100.5 236 30.5
MSTRG.8816 Avicennia marina HOM05D003975 ORTHO05D009762 1.3e-18 99.8 229 29.7
TWI39G0436 Tripterygium wilfordii HOM05D003975 ORTHO05D009762 1.4e-17 96.3 259 30.1
HanXRQChr05g0142511 Helianthus annuus HOM05D003975 ORTHO05D009762 2.4e-17 95.5 229 31.4
Atru.chr1.696 Acer truncatum HOM05D003975 ORTHO05D009762 2.1e-16 92.4 228 28.1
QL05p001270 Quercus lobata HOM05D003975 ORTHO05D009762 7.8e-16 90.5 329 26.4
Sabra15G0048500 Salix brachista HOM05D003975 ORTHO05D009762 7.8e-16 90.5 303 38.0
Sed0001623 Sechium edule HOM05D003975 ORTHO05D009762 7.8e-16 90.5 222 30.2
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 1.0e-15 90.1 259 28.6
Carub.0008s2305 Capsella rubella HOM05D003975 ORTHO05D009762 1.0e-15 90.1 275 29.8
Duzib205G1466 Durio zibethinus HOM05D003975 ORTHO05D009762 1.0e-15 90.1 231 32.0
CAN.G48.19 Capsicum annuum HOM05D003975 ORTHO05D009762 1.7e-15 89.4 209 33.0
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 1.7e-15 89.4 249 30.1
Cc00_g07030 Coffea canephora HOM05D003975 ORTHO05D009762 1.7e-15 89.4 236 30.1
Migut.F00464 Erythranthe guttata HOM05D003975 ORTHO05D009762 1.7e-15 89.4 246 29.3
Thhalv10003595m.g Eutrema salsugineum HOM05D003975 ORTHO05D009762 1.7e-15 89.4 253 27.7
QL09p019427 Quercus lobata HOM05D003975 ORTHO05D009762 6.6e-15 87.4 508 31.5
CANSAT11G0896 Cannabis sativa HOM05D003975 ORTHO05D009762 1.9e-14 85.9 262 27.5
AT5G62370 Arabidopsis thaliana HOM05D003975 ORTHO05D009762 3.3e-14 85.1 244 29.1
A01p18130 Brassica napus HOM05D003975 ORTHO05D009762 1.2e-13 83.2 259 28.6
BraA01t01768Z Brassica rapa HOM05D003975 ORTHO05D009762 1.2e-13 83.2 259 28.6
MBI04_g11438_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009762 1.2e-13 83.2 153 38.6
THA.LOC104821407 Tarenaya hassleriana HOM05D003975 ORTHO05D009762 1.2e-13 83.2 278 27.0
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 2.8e-13 82.0 323 35.0
Nitab4.5_0002149g0030 Nicotiana tabacum HOM05D003975 ORTHO05D009762 3.6e-13 81.6 328 25.6
MELO3C006816.2 Cucumis melo HOM05D003975 ORTHO05D009762 8.1e-13 80.5 250 27.2
Gorai.003G114200 Gossypium raimondii HOM05D003975 ORTHO05D009762 1.1e-12 80.1 253 29.2
Gohir.D03G107900 Gossypium hirsutum HOM05D003975 ORTHO05D009762 1.2e-11 76.6 253 28.9
CARHR276150 Cardamine hirsuta HOM05D003975 ORTHO05D009762 1.5e-11 76.3 234 27.4
Sabra15G0046400 Salix brachista HOM05D003975 ORTHO05D009762 1.5e-11 76.3 303 36.6
Dinv28563 Davidia involucrata HOM05D003975 ORTHO05D009762 2.6e-11 75.5 195 32.3
FAN07G1209 Fragaria x ananassa HOM05D005622 ORTHO05D002854 7.6e-11 73.9 199 28.6
Sc04g0007650 Simmondsia chinensis HOM05D005622 ORTHO05D002854 1.3e-10 73.2 253 28.9
CiPaw.03G094900 Carya illinoinensis HOM05D003975 ORTHO05D009762 2.2e-10 72.4 262 27.5
Ciclev10030383m.g Citrus clementina HOM05D000855 ORTHO05D000003 2.2e-10 72.4 177 30.5
Sabra15G0044600 Salix brachista HOM05D003975 ORTHO05D009762 2.2e-10 72.4 303 37.0
DCAR_029158 Daucus carota HOM05D003975 ORTHO05D009762 2.9e-10 72.0 221 29.4
FAN17G0216 Fragaria x ananassa HOM05D005622 ORTHO05D002854 2.9e-10 72.0 199 27.6
FAN22G2146 Fragaria x ananassa HOM05D005622 ORTHO05D002854 6.4e-10 70.9 199 28.1
FAN12G0629 Fragaria x ananassa HOM05D005622 ORTHO05D002854 1.4e-09 69.7 199 28.1
FvH4_4g30220 Fragaria vesca HOM05D005622 ORTHO05D002854 1.9e-09 69.3 199 28.1
COL.COLO4_14135 Corchorus olitorius HOM05D003975 ORTHO05D009762 2.4e-09 68.9 246 26.4
ATR0743G137 Amborella trichopoda HOM05D003975 ORTHO05D009762 3.2e-09 68.6 158 31.0
CsaV3_1G010760 Cucumis sativus L. HOM05D002890 ORTHO05D000003 3.2e-09 68.6 172 23.8
SMO356G0401 Selaginella moellendorffii HOM05D007128 ORTHO05D000761 3.2e-09 68.6 218 24.8
Zm00001eb398710 Zea mays HOM05D011046 ORTHO05D013342 4.2e-09 68.2 174 27.0
MD04G1014300 Malus domestica HOM05D000162 ORTHO05D000090 5.4e-09 67.8 226 21.7
TAR375G0346 Trochodendron aralioides HOM05D003975 ORTHO05D009762 7.1e-09 67.4 130 39.2
Zm00001eb191870 Zea mays HOM05D011046 ORTHO05D013342 7.1e-09 67.4 174 26.4
Nitab4.5_0009543g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.2e-08 66.6 188 30.9
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 2.1e-08 65.9 177 31.6
Prupe.1G285700 Prunus persica HOM05D005622 ORTHO05D002854 2.1e-08 65.9 199 25.6
Rhsim09G0192100 Rhododendron simsii HOM05D000201 ORTHO05D000375 2.1e-08 65.9 206 29.6
AagrBONN_evm.TU.Sc2ySwM_344.3481 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.7e-08 65.5 244 25.4
Gohir.A03G058201 Gossypium hirsutum HOM05D003975 ORTHO05D009762 7.8e-08 63.9 317 46.4
ATR0743G010 Amborella trichopoda HOM05D003975 ORTHO05D009762 1.0e-07 63.5 158 29.7
Aqoxy6G00092 Aquilegia oxysepala HOM05D003975 ORTHO05D009762 1.0e-07 63.5 179 29.6
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 1.0e-07 63.5 233 21.5
SEGI_31683 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 1.3e-07 63.2 106 30.2
AagrBONN_evm.TU.Sc2ySwM_368.60 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.3e-07 62.4 255 23.9
BcaNung03570 Brassica carinata HOM05D003975 ORTHO05D009762 2.3e-07 62.4 275 26.5
Lj8C41T2 Lonicera japonica HOM05D003975 ORTHO05D009762 2.3e-07 62.4 173 29.5
Atru.BG.229.p Acer truncatum HOM05D006218 ORTHO05D007338 3.0e-07 62.0 135 29.6
MSTRG.20959 Avicennia marina HOM05D001779 ORTHO05D001753 3.0e-07 62.0 103 28.2
A01p10770 Brassica napus HOM05D000001 ORTHO05D000003 3.0e-07 62.0 176 25.0
PSO210G0586 Papaver somniferum HOM05D001779 ORTHO05D001753 3.0e-07 62.0 99 31.3
Prupe.8G196100 Prunus persica HOM05D008810 ORTHO05D010971 3.0e-07 62.0 136 26.5
ATR1088G021 Amborella trichopoda HOM05D000001 ORTHO05D009071 3.9e-07 61.6 141 26.2
AagrBONN_evm.TU.Sc2ySwM_117.3665 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.9e-07 61.6 279 21.9
AagrBONN_evm.TU.Sc2ySwM_362.2733 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.1e-07 61.2 214 23.4
MSTRG.11331 Avicennia marina HOM05D005362 ORTHO05D006895 5.1e-07 61.2 219 26.0
EL10Ac4g10271 Beta vulgaris HOM05D005622 ORTHO05D002854 5.1e-07 61.2 196 25.0
ATR0661G071 Amborella trichopoda HOM05D000001 ORTHO05D000003 6.6e-07 60.8 228 23.2
EL10Ac4g10254 Beta vulgaris HOM05D005622 ORTHO05D002854 6.6e-07 60.8 196 24.5
Thhalv10024377m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 6.6e-07 60.8 187 25.7
MD10G1276800 Malus domestica HOM05D000001 ORTHO05D000003 6.6e-07 60.8 142 28.2
Phvul.008G205300 Phaseolus vulgaris HOM05D004783 ORTHO05D005581 6.6e-07 60.8 208 24.0
vmacro02795 Vaccinium macrocarpon HOM05D008810 ORTHO05D010971 6.6e-07 60.8 136 33.1
Aa31LG11G1250 Aethionema arabicum HOM05D003975 ORTHO05D009762 8.7e-07 60.5 272 22.4
AagrBONN_evm.TU.Sc2ySwM_368.2635 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.7e-07 60.5 306 23.2
arahy.Tifrunner.gnm1.ann1.0N6WQ2 Arachis hypogaea HOM05D000855 ORTHO05D008530 8.7e-07 60.5 140 26.4
MBI07_g05481_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 8.7e-07 60.5 103 28.2
Manes.10G007100 Manihot esculenta HOM05D005622 ORTHO05D002854 8.7e-07 60.5 196 24.5
BraA01t01023Z Brassica rapa HOM05D000001 ORTHO05D000003 1.1e-06 60.1 176 24.4
CiPaw.09G071900 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.1e-06 60.1 142 26.8
Gohir.D07G165100 Gossypium hirsutum HOM05D008810 ORTHO05D010971 1.1e-06 60.1 143 24.5
MD10G1157300 Malus domestica HOM05D008810 ORTHO05D010971 1.1e-06 60.1 135 24.4
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.5e-06 59.7 90 34.4
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 1.5e-06 59.7 90 34.4
Zm00001eb224150 Zea mays HOM05D011046 ORTHO05D013342 1.5e-06 59.7 141 27.0
AagrBONN_evm.TU.Sc2ySwM_362.870 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.9e-06 59.3 282 24.5
Lalb_Chr10g0098711 Lupinus albus HOM05D005622 ORTHO05D002854 1.9e-06 59.3 196 25.5
Zm00001eb001440 Zea mays HOM05D007884 ORTHO05D009968 1.9e-06 59.3 123 30.9
ECA240G4052 Erigeron canadensis HOM05D000162 ORTHO05D000090 2.5e-06 58.9 186 25.8
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 2.5e-06 58.9 90 34.4
Gorai.001G188700 Gossypium raimondii HOM05D008810 ORTHO05D010971 2.5e-06 58.9 143 24.5
Lj7C559T20 Lonicera japonica HOM05D000001 ORTHO05D000003 2.5e-06 58.9 215 25.6
Os04g0520900 Oryza sativa ssp. japonica HOM05D002007 ORTHO05D000355 2.5e-06 58.9 289 24.2
PSO761G0432 Papaver somniferum HOM05D001779 ORTHO05D001753 2.5e-06 58.9 99 30.3
Solyc03g093150.3 Solanum lycopersicum HOM05D003975 ORTHO05D009762 2.5e-06 58.9 144 35.4
Zm00001eb298940 Zea mays HOM05D001779 ORTHO05D001753 2.5e-06 58.9 103 29.1
AagrBONN_evm.TU.Sc2ySwM_344.3499 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.3e-06 58.5 243 22.6
BcaC05g29817 Brassica carinata HOM05D001779 ORTHO05D001753 3.3e-06 58.5 99 31.3
BcaC05g30026 Brassica carinata HOM05D001779 ORTHO05D001753 3.3e-06 58.5 99 30.3
A05p41580 Brassica napus HOM05D001779 ORTHO05D001753 3.3e-06 58.5 99 31.3
A05p41600 Brassica napus HOM05D001779 ORTHO05D001753 3.3e-06 58.5 99 31.3
C05p60810 Brassica napus HOM05D001779 ORTHO05D001753 3.3e-06 58.5 99 31.3
BraA05t22879Z Brassica rapa HOM05D001779 ORTHO05D001753 3.3e-06 58.5 99 31.3
Carub.0007s2249 Capsella rubella HOM05D000001 ORTHO05D000003 3.3e-06 58.5 176 24.4
Migut.B00504 Erythranthe guttata HOM05D005362 ORTHO05D006895 3.3e-06 58.5 219 26.0
Eucgr.J00651 Eucalyptus grandis HOM05D004783 ORTHO05D005581 3.3e-06 58.5 463 28.7
FAN02G1074 Fragaria x ananassa HOM05D007157 ORTHO05D009045 3.3e-06 58.5 137 27.7
HanXRQChr16g0515891 Helianthus annuus HOM05D007956 ORTHO05D010152 3.3e-06 58.5 219 21.9
Manes.06G082600 Manihot esculenta HOM05D005362 ORTHO05D006895 3.3e-06 58.5 219 26.5
Sc10g0006710 Simmondsia chinensis HOM05D007202 ORTHO05D009125 3.3e-06 58.5 140 30.0
Sopen03g023950 Solanum pennellii HOM05D003975 ORTHO05D009762 3.3e-06 58.5 113 37.2
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 3.3e-06 58.5 187 23.0
EL10Ac3g06265 Beta vulgaris HOM05D001779 ORTHO05D001753 4.3e-06 58.2 99 30.3
FvH4_1g04070 Fragaria vesca HOM05D000001 ORTHO05D000003 4.3e-06 58.2 223 24.2
Nn1g02624 Nelumbo nucifera HOM05D000162 ORTHO05D000090 4.3e-06 58.2 166 24.7
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 4.3e-06 58.2 154 23.4
vmacro08004 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 4.3e-06 58.2 103 29.1
Aa31LG5G17860 Aethionema arabicum HOM05D008810 ORTHO05D010971 5.6e-06 57.8 136 26.5
ClCG01G011340 Citrullus lanatus HOM05D007202 ORTHO05D009125 5.6e-06 57.8 142 26.1
ClCG08G004220 Citrullus lanatus HOM05D007128 ORTHO05D009059 5.6e-06 57.8 181 23.8
Dinv32349 Davidia involucrata HOM05D000001 ORTHO05D000003 5.6e-06 57.8 142 26.8
FAN19G2116 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.6e-06 57.8 223 23.8
Oeu004580.1 Olea europaea HOM05D005622 ORTHO05D002854 5.6e-06 57.8 194 24.7
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 5.6e-06 57.8 255 25.1
RcHm_v2.0_Chr7g0232061 Rosa chinensis HOM05D007884 ORTHO05D009968 5.6e-06 57.8 122 27.0
Atru.chr1.699 Acer truncatum HOM05D003975 ORTHO05D009762 7.3e-06 57.4 115 31.3
ATR0796G248 Amborella trichopoda HOM05D001779 ORTHO05D001753 7.3e-06 57.4 99 30.3
AL7G35500 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 7.3e-06 57.4 187 24.6
AUR62029951 Chenopodium quinoa HOM05D005362 ORTHO05D006895 7.3e-06 57.4 216 26.4
AUR62029986 Chenopodium quinoa HOM05D001779 ORTHO05D001753 7.3e-06 57.4 99 30.3
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 7.3e-06 57.4 114 32.5
Sc19g0002120 Simmondsia chinensis HOM05D001779 ORTHO05D001753 7.3e-06 57.4 99 30.3
SGA_v2.0_scaffold171G38942 Striga asiatica HOM05D001779 ORTHO05D001753 7.3e-06 57.4 103 28.2
SGA_v2.0_scaffold173G39193 Striga asiatica HOM05D003133 ORTHO05D003642 7.3e-06 57.4 228 22.8
Zm00001eb118400 Zea mays HOM05D002453 ORTHO05D002107 7.3e-06 57.4 151 26.5
Zm00001eb210080 Zea mays HOM05D011046 ORTHO05D013342 7.3e-06 57.4 153 24.8
Zm00001eb367370 Zea mays HOM05D011046 ORTHO05D013342 7.3e-06 57.4 153 24.8
ATR0605G071 Amborella trichopoda HOM05D004783 ORTHO05D005581 9.6e-06 57.0 176 26.1
AagrBONN_evm.TU.Sc2ySwM_340.435 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.6e-06 57.0 256 23.0
Aqoxy3G03650 Aquilegia oxysepala HOM05D005362 ORTHO05D006895 9.6e-06 57.0 195 27.7
Aqoxy5G00031 Aquilegia oxysepala HOM05D001779 ORTHO05D001753 9.6e-06 57.0 103 27.2
Cfa014169 Carpinus fangiana HOM05D005362 ORTHO05D006895 9.6e-06 57.0 195 28.7
ECA233G0980 Erigeron canadensis HOM05D001779 ORTHO05D001753 9.6e-06 57.0 103 28.2
ECA240G1124 Erigeron canadensis HOM05D005398 ORTHO05D000476 9.6e-06 57.0 186 25.8
FAN11G2213 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.6e-06 57.0 147 25.9
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 9.6e-06 57.0 92 33.7
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 9.6e-06 57.0 90 33.3
Lalb_Chr19g0125661 Lupinus albus HOM05D001779 ORTHO05D001753 9.6e-06 57.0 103 31.1
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 9.6e-06 57.0 219 23.7
PGR083G2638 Punica granatum HOM05D008684 ORTHO05D010796 9.6e-06 57.0 146 27.4
PGSC0003DMG402014825 Solanum tuberosum HOM05D003975 ORTHO05D009762 9.6e-06 57.0 113 36.3
HPP92_025249 Vanilla planifolia HOM05D000001 ORTHO05D010091 9.6e-06 57.0 202 23.8
Zm00001eb118500 Zea mays HOM05D017046 ORTHO05D020998 9.6e-06 57.0 148 30.4


User provided reference genes

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