Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002441 Vanilla planifolia HOM05D000201 ORTHO05D431177 9.2e-75 283.5 145 100.0
TAR623G0064 Trochodendron aralioides HOM05D000201 ORTHO05D007118 1.0e-09 67.4 37 73.0
Cc10_g11480 Coffea canephora HOM05D000201 ORTHO05D007118 3.0e-09 65.9 84 46.4
HPP92_012990 Vanilla planifolia HOM05D000201 ORTHO05D007118 6.7e-09 64.7 75 49.3
Duzib106G1295 Durio zibethinus HOM05D000201 ORTHO05D007118 8.8e-09 64.3 36 77.8
MBI17_g02194_MAGBIO Magnolia biondii HOM05D000201 ORTHO05D007118 1.1e-08 63.9 40 67.5
CANSAT56G3948 Cannabis sativa HOM05D000201 ORTHO05D007118 2.5e-08 62.8 36 75.0
Lj5g0027464 Lotus japonicus HOM05D000201 ORTHO05D007118 2.5e-08 62.8 76 46.1
Cpa.g.sc53.162 Carica papaya HOM05D000201 ORTHO05D007118 3.3e-08 62.4 39 64.1
Ca_10446_v3 Cicer arietinum L. HOM05D000201 ORTHO05D007118 3.3e-08 62.4 73 46.6
Ciclev10033418m.g Citrus clementina HOM05D000201 ORTHO05D007118 4.3e-08 62.0 36 75.0
Cc02_g10670 Coffea canephora HOM05D000201 ORTHO05D007118 4.3e-08 62.0 36 75.0
Cc10_g11440 Coffea canephora HOM05D000201 ORTHO05D010719 4.3e-08 62.0 79 46.8
DCAR_006397 Daucus carota HOM05D000201 ORTHO05D007118 4.3e-08 62.0 36 69.4
Dinv36370 Davidia involucrata HOM05D000201 ORTHO05D007118 4.3e-08 62.0 36 72.2
Aqoxy2G01652 Aquilegia oxysepala HOM05D000201 ORTHO05D007118 7.4e-08 61.2 36 72.2
Oeu005291.2 Olea europaea HOM05D000201 ORTHO05D007118 7.4e-08 61.2 36 72.2
Atru.chr12.888 Acer truncatum HOM05D000201 ORTHO05D007118 9.7e-08 60.8 36 72.2
HanXRQChr14g0455791 Helianthus annuus HOM05D000201 ORTHO05D007118 9.7e-08 60.8 36 72.2
Lsat_1_v5_gn_2_103500 Lactuca sativa HOM05D000201 ORTHO05D007118 9.7e-08 60.8 36 72.2
ATR0317G040 Amborella trichopoda HOM05D000201 ORTHO05D007118 1.3e-07 60.5 36 72.2
CANSAT56G1828 Cannabis sativa HOM05D000201 ORTHO05D007118 1.3e-07 60.5 36 72.2
DCAR_019075 Daucus carota HOM05D000201 ORTHO05D007118 1.3e-07 60.5 36 69.4
Potri.008G032100 Populus trichocarpa HOM05D000201 ORTHO05D007118 1.3e-07 60.5 36 69.4
Rhsim03G0112300 Rhododendron simsii HOM05D000201 ORTHO05D007118 1.3e-07 60.5 36 66.7
COL.COLO4_32903 Corchorus olitorius HOM05D000201 ORTHO05D007118 1.7e-07 60.1 48 58.3
ClCG05G021360 Citrullus lanatus HOM05D000201 ORTHO05D007118 2.2e-07 59.7 36 72.2
CsaV3_5G035880 Cucumis sativus L. HOM05D000201 ORTHO05D007118 2.2e-07 59.7 36 72.2
MD07G1165800 Malus domestica HOM05D000201 ORTHO05D007118 2.2e-07 59.7 40 62.5
Manes.07G095200 Manihot esculenta HOM05D000201 ORTHO05D007118 2.2e-07 59.7 36 69.4
Sed0025552 Sechium edule HOM05D000201 ORTHO05D007118 2.2e-07 59.7 36 72.2
Haze_16763 Corylus avellana HOM05D000201 ORTHO05D164206 2.8e-07 59.3 202 25.2
Lj3A937T94 Lonicera japonica HOM05D000201 ORTHO05D007118 2.8e-07 59.3 36 69.4
MD01G1099200 Malus domestica HOM05D000201 ORTHO05D007118 2.8e-07 59.3 37 64.9
Psat6g172520 Pisum sativum HOM05D000201 ORTHO05D007118 2.8e-07 59.3 36 72.2
Solyc05g055490.3 Solanum lycopersicum HOM05D000201 ORTHO05D007118 2.8e-07 59.3 36 69.4
TWI38G1242 Tripterygium wilfordii HOM05D000201 ORTHO05D007118 2.8e-07 59.3 36 72.2
Migut.F01697 Erythranthe guttata HOM05D000201 ORTHO05D007118 3.7e-07 58.9 36 72.2
Gohir.A05G292100 Gossypium hirsutum HOM05D000201 ORTHO05D007118 3.7e-07 58.9 79 44.3
Gohir.D05G293100 Gossypium hirsutum HOM05D000201 ORTHO05D007118 3.7e-07 58.9 79 44.3
Gorai.009G309500 Gossypium raimondii HOM05D000201 ORTHO05D007118 3.7e-07 58.9 79 44.3
Potri.008G032200 Populus trichocarpa HOM05D000201 ORTHO05D007118 3.7e-07 58.9 92 41.3
PGR044G0073 Punica granatum HOM05D000201 ORTHO05D007118 3.7e-07 58.9 36 69.4
SalBow6G5810 Salvia bowleyana HOM05D000201 ORTHO05D007118 3.7e-07 58.9 36 69.4
TWI38G1055 Tripterygium wilfordii HOM05D000201 ORTHO05D007118 3.7e-07 58.9 36 69.4
HPP92_012989 Vanilla planifolia HOM05D000201 ORTHO05D010719 3.7e-07 58.9 52 61.5
BcaB04g21011 Brassica carinata HOM05D000201 ORTHO05D001601 4.8e-07 58.5 62 51.6
Cpa.g.sc340.9 Carica papaya HOM05D000201 ORTHO05D007118 4.8e-07 58.5 36 66.7
Migut.F01826 Erythranthe guttata HOM05D000201 ORTHO05D001601 4.8e-07 58.5 37 70.3
FvH4_7g18341 Fragaria vesca HOM05D000201 ORTHO05D007118 4.8e-07 58.5 36 69.4
FAN03G1675 Fragaria x ananassa HOM05D000201 ORTHO05D007118 4.8e-07 58.5 36 69.4
FAN06G2895 Fragaria x ananassa HOM05D000201 ORTHO05D007118 4.8e-07 58.5 36 69.4
FAN06G4693 Fragaria x ananassa HOM05D000201 ORTHO05D007118 4.8e-07 58.5 36 69.4
FAN10G3367 Fragaria x ananassa HOM05D000201 ORTHO05D007118 4.8e-07 58.5 36 69.4
Glyma.10G197300 Glycine max HOM05D000201 ORTHO05D007118 4.8e-07 58.5 36 69.4
PGR142G3903 Punica granatum HOM05D000201 ORTHO05D007118 4.8e-07 58.5 36 72.2
RcHm_v2.0_Chr1g0362061 Rosa chinensis HOM05D000201 ORTHO05D007118 4.8e-07 58.5 36 69.4
A01p40230 Brassica napus HOM05D000201 ORTHO05D001601 6.3e-07 58.2 62 50.0
CSS0032874 Camellia sinensis var. sinensis HOM05D000201 ORTHO05D007118 6.3e-07 58.2 36 66.7
Migut.F02073 Erythranthe guttata HOM05D000201 ORTHO05D001601 6.3e-07 58.2 37 70.3
Prupe.2G205500 Prunus persica HOM05D000201 ORTHO05D007118 6.3e-07 58.2 72 45.8
MSTRG.27423 Avicennia marina HOM05D000201 ORTHO05D001601 8.2e-07 57.8 37 70.3
MSTRG.9231 Avicennia marina HOM05D000201 ORTHO05D001601 8.2e-07 57.8 37 70.3
Duzib106G1932 Durio zibethinus HOM05D000201 ORTHO05D007118 8.2e-07 57.8 37 67.6
Glyma.20G192800 Glycine max HOM05D000201 ORTHO05D007118 8.2e-07 57.8 73 42.5
Glyma.20G192900 Glycine max HOM05D000201 ORTHO05D007118 8.2e-07 57.8 36 66.7
Lalb_Chr02g0151041 Lupinus albus HOM05D000201 ORTHO05D007118 8.2e-07 57.8 73 43.8
VMungo0720G2888 Vigna mungo HOM05D000201 ORTHO05D007118 8.2e-07 57.8 36 69.4
Lj3A937G85 Lonicera japonica HOM05D000201 ORTHO05D007118 1.1e-06 57.4 36 66.7
Oeu015069.1 Olea europaea HOM05D000201 ORTHO05D007118 1.1e-06 57.4 36 69.4
Phvul.007G140000 Phaseolus vulgaris HOM05D000201 ORTHO05D007118 1.1e-06 57.4 79 41.8
vmacro07193 Vaccinium macrocarpon HOM05D000201 ORTHO05D007118 1.1e-06 57.4 79 36.7
Aa31LG8G610 Aethionema arabicum HOM05D000201 ORTHO05D001601 1.4e-06 57.0 56 53.6
BcaC09g48305 Brassica carinata HOM05D000201 ORTHO05D001601 1.4e-06 57.0 62 50.0
C01p51700 Brassica napus HOM05D000201 ORTHO05D001601 1.4e-06 57.0 62 50.0
BolC1t05114H Brassica oleracea HOM05D000201 ORTHO05D001601 1.4e-06 57.0 62 50.0
COL.COLO4_32902 Corchorus olitorius HOM05D000201 ORTHO05D007118 1.4e-06 57.0 48 58.3
MELO3C012392.2 Cucumis melo HOM05D000201 ORTHO05D007118 1.4e-06 57.0 57 54.4
Lsat_1_v5_gn_8_18540 Lactuca sativa HOM05D000201 ORTHO05D007118 1.4e-06 57.0 36 69.4
Prupe.6G000400 Prunus persica HOM05D000201 ORTHO05D001601 1.4e-06 57.0 37 70.3
Aa31LG8G600 Aethionema arabicum HOM05D000201 ORTHO05D001601 1.8e-06 56.6 37 70.3
AL3G25240 Arabidopsis lyrata HOM05D000201 ORTHO05D001601 1.8e-06 56.6 37 70.3
AT5G51480 Arabidopsis thaliana HOM05D000201 ORTHO05D001515 1.8e-06 56.6 37 62.2
Carub.0001s4409 Capsella rubella HOM05D000201 ORTHO05D001601 1.8e-06 56.6 37 70.3
Thhalv10020433m.g Eutrema salsugineum HOM05D000201 ORTHO05D001601 1.8e-06 56.6 37 70.3
FvH4_7g18350 Fragaria vesca HOM05D000201 ORTHO05D007118 1.8e-06 56.6 44 61.4
FAN03G2984 Fragaria x ananassa HOM05D000201 ORTHO05D007118 1.8e-06 56.6 44 61.4
FAN25G0300 Fragaria x ananassa HOM05D000201 ORTHO05D001601 1.8e-06 56.6 51 51.0
HanXRQChr08g0218361 Helianthus annuus HOM05D000201 ORTHO05D007118 1.8e-06 56.6 38 68.4
Lj4g0005176 Lotus japonicus HOM05D000201 ORTHO05D001601 1.8e-06 56.6 33 78.8
RcHm_v2.0_Chr1g0362091 Rosa chinensis HOM05D000201 ORTHO05D007118 1.8e-06 56.6 44 63.6
Sp3g11580 Schrenkiella parvula HOM05D000201 ORTHO05D001601 1.8e-06 56.6 37 70.3
THA.LOC104822685 Tarenaya hassleriana HOM05D000201 ORTHO05D001601 1.8e-06 56.6 37 70.3
BcaB04g18756 Brassica carinata HOM05D000201 ORTHO05D001601 2.4e-06 56.2 37 70.3
BcaC01g03996 Brassica carinata HOM05D000201 ORTHO05D001601 2.4e-06 56.2 37 67.6
BcaC05g29183 Brassica carinata HOM05D000201 ORTHO05D001601 2.4e-06 56.2 37 67.6
A03p38170 Brassica napus HOM05D000201 ORTHO05D001601 2.4e-06 56.2 37 67.6
A05p36140 Brassica napus HOM05D000201 ORTHO05D001601 2.4e-06 56.2 37 67.6
C03p46330 Brassica napus HOM05D000201 ORTHO05D001601 2.4e-06 56.2 37 67.6
C05p54510 Brassica napus HOM05D000201 ORTHO05D001601 2.4e-06 56.2 37 67.6
BolC3t16902H Brassica oleracea HOM05D000201 ORTHO05D001601 2.4e-06 56.2 37 67.6
BolC5t34118H Brassica oleracea HOM05D000201 ORTHO05D001601 2.4e-06 56.2 37 67.6
BraA03t12970Z Brassica rapa HOM05D000201 ORTHO05D001601 2.4e-06 56.2 37 67.6
BraA05t22420Z Brassica rapa HOM05D000201 ORTHO05D001601 2.4e-06 56.2 37 67.6
Carub.0003s1276 Capsella rubella HOM05D000201 ORTHO05D001601 2.4e-06 56.2 37 70.3
CARHR088000 Cardamine hirsuta HOM05D000201 ORTHO05D001601 2.4e-06 56.2 37 67.6
Migut.F01916 Erythranthe guttata HOM05D000201 ORTHO05D007118 2.4e-06 56.2 77 42.9
FAN10G2832 Fragaria x ananassa HOM05D000201 ORTHO05D007118 2.4e-06 56.2 36 66.7
Peaxi162Scf00176g01641 Petunia axillaris HOM05D000201 ORTHO05D007118 2.4e-06 56.2 75 41.3
Aa31LG10G650 Aethionema arabicum HOM05D000201 ORTHO05D001601 3.1e-06 55.8 37 67.6
AT3G13390 Arabidopsis thaliana HOM05D000201 ORTHO05D001601 3.1e-06 55.8 37 64.9
CiPaw.01G266200 Carya illinoinensis HOM05D000201 ORTHO05D007118 3.1e-06 55.8 95 37.9
Eucgr.G02744 Eucalyptus grandis HOM05D000201 ORTHO05D007118 3.1e-06 55.8 36 69.4
Thhalv10020444m.g Eutrema salsugineum HOM05D000201 ORTHO05D001601 3.1e-06 55.8 37 67.6
Lsat_1_v5_gn_2_50580 Lactuca sativa HOM05D000201 ORTHO05D001601 3.1e-06 55.8 37 64.9
Nitab4.5_0000096g0220 Nicotiana tabacum HOM05D000201 ORTHO05D007118 3.1e-06 55.8 36 66.7
Peaxi162Scf00344g00049 Petunia axillaris HOM05D000201 ORTHO05D001601 3.1e-06 55.8 37 67.6
Atru.chr1.4134 Acer truncatum HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 62.2
Atru.chr1.4135 Acer truncatum HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 62.2
AL1G63620 Arabidopsis lyrata HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
AL3G25250 Arabidopsis lyrata HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
AT1G55570 Arabidopsis thaliana HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
AT3G13400 Arabidopsis thaliana HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
BcaB04g16950 Brassica carinata HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
BcaB04g18757 Brassica carinata HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
BcaB04g21012 Brassica carinata HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
BcaB07g33206 Brassica carinata HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
BcaC01g03995 Brassica carinata HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
BcaC05g29182 Brassica carinata HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
BcaC08g43635 Brassica carinata HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
A01p40220 Brassica napus HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
A03p38180 Brassica napus HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
A05p36130 Brassica napus HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
A06p00170 Brassica napus HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
C03p46340 Brassica napus HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
C05p54500 Brassica napus HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
C06p10510 Brassica napus HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
BolC3t16903H Brassica oleracea HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
BolC5t34117H Brassica oleracea HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
BolC6t36131H Brassica oleracea HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
BraA01t04059Z Brassica rapa HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
BraA03t12971Z Brassica rapa HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
BraA05t22419Z Brassica rapa HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
BraA06t23233Z Brassica rapa HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
Carub.0003s1277 Capsella rubella HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
CARHR045270 Cardamine hirsuta HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
FvH4_3g46080 Fragaria vesca HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
FAN16G0183 Fragaria x ananassa HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
FAN21G1391 Fragaria x ananassa HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
Medtr1g090707 Medicago truncatula HOM05D000201 ORTHO05D007118 4.1e-06 55.5 51 56.9
RcHm_v2.0_Chr5g0084141 Rosa chinensis HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
Sp3g11590 Schrenkiella parvula HOM05D000201 ORTHO05D001601 4.1e-06 55.5 37 64.9
Gorai.009G309400 Gossypium raimondii HOM05D000201 ORTHO05D007118 5.3e-06 55.1 37 62.2
HanXRQChr14g0455781 Helianthus annuus HOM05D000201 ORTHO05D007118 5.3e-06 55.1 51 56.9
MD03G1000500 Malus domestica HOM05D000201 ORTHO05D001601 5.3e-06 55.1 37 64.9
MD11G1000300 Malus domestica HOM05D000201 ORTHO05D001601 5.3e-06 55.1 37 64.9
Phvul.007G139900 Phaseolus vulgaris HOM05D000201 ORTHO05D007118 5.3e-06 55.1 77 39.0
QL08p053234 Quercus lobata HOM05D000201 ORTHO05D007118 5.3e-06 55.1 51 54.9
Sabra08G0021100 Salix brachista HOM05D000201 ORTHO05D007118 5.3e-06 55.1 36 69.4
BcaC01g01538 Brassica carinata HOM05D000201 ORTHO05D001601 6.9e-06 54.7 37 62.2
BolC3t21597H Brassica oleracea HOM05D000201 ORTHO05D001601 6.9e-06 54.7 37 62.2
BraA08t32109Z Brassica rapa HOM05D000201 ORTHO05D001601 6.9e-06 54.7 37 62.2
Cc09_g04350 Coffea canephora HOM05D000201 ORTHO05D001601 6.9e-06 54.7 37 64.9
DCAR_004093 Daucus carota HOM05D000201 ORTHO05D001601 6.9e-06 54.7 34 61.8
Lalb_Chr23g0278491 Lupinus albus HOM05D000201 ORTHO05D001601 6.9e-06 54.7 35 71.4
Manes.03G095116 Manihot esculenta HOM05D000201 ORTHO05D001601 6.9e-06 54.7 37 64.9
Psat7g133760 Pisum sativum HOM05D000201 ORTHO05D001601 6.9e-06 54.7 33 72.7
QL09p019487 Quercus lobata HOM05D000201 ORTHO05D001515 6.9e-06 54.7 74 44.6
Sc06g0004870 Simmondsia chinensis HOM05D000201 ORTHO05D001601 6.9e-06 54.7 37 64.9
Sc16g0010780 Simmondsia chinensis HOM05D000201 ORTHO05D001601 6.9e-06 54.7 37 64.9
Thecc.09G206700 Theobroma cacao HOM05D000201 ORTHO05D001601 6.9e-06 54.7 37 67.6
TWI63G0265 Tripterygium wilfordii HOM05D000201 ORTHO05D007118 6.9e-06 54.7 36 63.9
Aa31LG3G7900 Aethionema arabicum HOM05D000201 ORTHO05D001515 9.1e-06 54.3 37 56.8
AT4G25240 Arabidopsis thaliana HOM05D000201 ORTHO05D001515 9.1e-06 54.3 37 59.5
BcaB04g16951 Brassica carinata HOM05D000201 ORTHO05D001601 9.1e-06 54.3 100 37.0
Carub.0007s1578 Capsella rubella HOM05D000201 ORTHO05D001515 9.1e-06 54.3 37 59.5
Thhalv10013035m.g Eutrema salsugineum HOM05D000201 ORTHO05D001515 9.1e-06 54.3 37 62.2
Thhalv10024736m.g Eutrema salsugineum HOM05D000201 ORTHO05D001515 9.1e-06 54.3 37 59.5
FAN11G0749 Fragaria x ananassa HOM05D000201 ORTHO05D001601 9.1e-06 54.3 37 64.9
HanXRQChr15g0494951 Helianthus annuus HOM05D000201 ORTHO05D001601 9.1e-06 54.3 37 64.9
MD03G1000200 Malus domestica HOM05D000201 ORTHO05D001601 9.1e-06 54.3 37 64.9
Manes.03G085900 Manihot esculenta HOM05D000201 ORTHO05D001601 9.1e-06 54.3 37 64.9
Manes.03G095100 Manihot esculenta HOM05D000201 ORTHO05D001601 9.1e-06 54.3 37 62.2
Manes.15G111700 Manihot esculenta HOM05D000201 ORTHO05D001601 9.1e-06 54.3 37 62.2
Potri.003G224100 Populus trichocarpa HOM05D000201 ORTHO05D001601 9.1e-06 54.3 37 67.6
HPP92_019033 Vanilla planifolia HOM05D000201 ORTHO05D001601 9.1e-06 54.3 37 62.2
HPP92_019034 Vanilla planifolia HOM05D000201 ORTHO05D001601 9.1e-06 54.3 37 62.2


User provided reference genes

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