Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000963 Vanilla planifolia HOM05D001647 ORTHO05D001191 1.5e-37 159.1 83 100.0
HPP92_000950 Vanilla planifolia HOM05D001647 ORTHO05D001191 6.8e-14 80.5 41 97.6
arahy.Tifrunner.gnm1.ann1.S0UJPA Arachis hypogaea HOM05D001647 ORTHO05D001191 1.2e-13 79.7 75 61.3
Dinv33429 Davidia involucrata HOM05D001647 ORTHO05D001191 2.0e-13 79.0 41 95.1
EL10Ac9g21672 Beta vulgaris HOM05D001647 ORTHO05D001191 4.4e-13 77.8 41 92.7
AUR62016795 Chenopodium quinoa HOM05D001647 ORTHO05D001191 5.7e-13 77.4 41 92.7
SalBow1G0849 Salvia bowleyana HOM05D001647 ORTHO05D001191 5.7e-13 77.4 41 92.7
Ca_04144_v3 Cicer arietinum L. HOM05D001647 ORTHO05D001191 7.5e-13 77.0 41 92.7
Glyma.05G002800 Glycine max HOM05D001647 ORTHO05D001191 7.5e-13 77.0 41 92.7
Hma1.2p1_1747F.1_g300520 Hydrangea macrophylla HOM05D001647 ORTHO05D001191 7.5e-13 77.0 41 92.7
Sc18g0005250 Simmondsia chinensis HOM05D001647 ORTHO05D001191 7.5e-13 77.0 41 92.7
Actinidia05984 Actinidia chinensis HOM05D001647 ORTHO05D001191 9.8e-13 76.6 46 82.6
SEGI_32949 Sequoiadendron giganteum HOM05D001647 ORTHO05D001191 9.8e-13 76.6 71 57.7
TPR.G31951 Trifolium pratense HOM05D001647 ORTHO05D001191 9.8e-13 76.6 41 90.2
Lj7A600G51 Lonicera japonica HOM05D001647 ORTHO05D001191 1.3e-12 76.3 41 90.2
DCAR_021729 Daucus carota HOM05D000709 ORTHO05D001191 1.7e-12 75.9 41 90.2
Manes.15G151600 Manihot esculenta HOM05D001647 ORTHO05D001191 1.7e-12 75.9 41 92.7
GSVIVG01032387001 Vitis vinifera HOM05D001647 ORTHO05D001191 1.7e-12 75.9 41 92.7
CiPaw.04G029400 Carya illinoinensis HOM05D000709 ORTHO05D001191 2.2e-12 75.5 41 90.2
AUR62010426 Chenopodium quinoa HOM05D001647 ORTHO05D001191 2.2e-12 75.5 41 87.8
Cc07_g01540 Coffea canephora HOM05D001647 ORTHO05D001191 2.2e-12 75.5 41 92.7
Eucgr.I01734 Eucalyptus grandis HOM05D001647 ORTHO05D001191 2.2e-12 75.5 41 90.2
Lalb_Chr11g0068561 Lupinus albus HOM05D001647 ORTHO05D001191 2.2e-12 75.5 41 90.2
QL02p074109 Quercus lobata HOM05D001647 ORTHO05D001191 2.2e-12 75.5 41 90.2
MBI16_g05784_MAGBIO Magnolia biondii HOM05D001647 ORTHO05D001191 3.7e-12 74.7 41 90.2
Os05g0145300 Oryza sativa ssp. japonica HOM05D001647 ORTHO05D001191 3.7e-12 74.7 41 90.2
Zm00001eb354360 Zea mays HOM05D001647 ORTHO05D001191 3.7e-12 74.7 41 90.2
arahy.Tifrunner.gnm1.ann1.BA4K4E Arachis hypogaea HOM05D001647 ORTHO05D001191 4.8e-12 74.3 41 87.8
MELO3C021588.2 Cucumis melo HOM05D001647 ORTHO05D001191 4.8e-12 74.3 39 92.3
VMungo0464G0398 Vigna mungo HOM05D001647 ORTHO05D001191 4.8e-12 74.3 41 87.8
Actinidia36122 Actinidia chinensis HOM05D001647 ORTHO05D001191 6.3e-12 73.9 41 90.2
Ah.01g006080 Amaranthus hybridus HOM05D001647 ORTHO05D001191 6.3e-12 73.9 41 90.2
ATR0824G238 Amborella trichopoda HOM05D001647 ORTHO05D001191 6.3e-12 73.9 41 90.2
CAN.G404.63 Capsicum annuum HOM05D001647 ORTHO05D001191 6.3e-12 73.9 41 90.2
CDE10G0781 Ceratophyllum demersum HOM05D001647 ORTHO05D001191 6.3e-12 73.9 41 90.2
CDE10G1164 Ceratophyllum demersum HOM05D001647 ORTHO05D001191 6.3e-12 73.9 41 90.2
Haze_14755 Corylus avellana HOM05D000709 ORTHO05D001191 6.3e-12 73.9 41 90.2
Nitab4.5_0003267g0020 Nicotiana tabacum HOM05D001647 ORTHO05D001191 6.3e-12 73.9 41 90.2
Peaxi162Scf00700g00436 Petunia axillaris HOM05D001647 ORTHO05D001191 6.3e-12 73.9 41 90.2
Psat1g053800 Pisum sativum HOM05D001647 ORTHO05D001191 6.3e-12 73.9 41 85.4
TAR371G1112 Trochodendron aralioides HOM05D000709 ORTHO05D001191 6.3e-12 73.9 39 92.3
Glyma.19G003000 Glycine max HOM05D001647 ORTHO05D001191 8.3e-12 73.6 41 90.2
Medtr6g004480 Medicago truncatula HOM05D001647 ORTHO05D001191 8.3e-12 73.6 40 87.5
PSO063G0624 Papaver somniferum HOM05D001647 ORTHO05D001191 8.3e-12 73.6 41 87.8
PSO067G0082 Papaver somniferum HOM05D001647 ORTHO05D001191 8.3e-12 73.6 41 87.8
Atru.chr6.2421 Acer truncatum HOM05D001647 ORTHO05D001191 1.1e-11 73.2 41 87.8
HanXRQChr17g0548611 Helianthus annuus HOM05D001647 ORTHO05D001191 1.1e-11 73.2 41 87.8
THA.LOC104823954 Tarenaya hassleriana HOM05D001647 ORTHO05D001191 1.1e-11 73.2 41 90.2
unitig_52.g17659 Utricularia gibba HOM05D001647 ORTHO05D001191 1.1e-11 73.2 41 87.8
Aqoxy5G03747 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 1.4e-11 72.8 41 87.8
Cpa.g.sc2900.3 Carica papaya HOM05D001647 ORTHO05D001191 1.4e-11 72.8 41 90.2
ECA246G2376 Erigeron canadensis HOM05D001647 ORTHO05D001191 1.4e-11 72.8 41 87.8
Lsat_1_v5_gn_0_47341 Lactuca sativa HOM05D001647 ORTHO05D001191 1.4e-11 72.8 41 87.8
SEGI_39124 Sequoiadendron giganteum HOM05D001647 ORTHO05D001191 1.4e-11 72.8 41 90.2
Solyc07g047900.3 Solanum lycopersicum HOM05D001647 ORTHO05D001191 1.4e-11 72.8 41 87.8
Sopen07g024330 Solanum pennellii HOM05D001647 ORTHO05D001191 1.4e-11 72.8 41 87.8
PGSC0003DMG400006153 Solanum tuberosum HOM05D001647 ORTHO05D001191 1.4e-11 72.8 41 87.8
Thecc.04G019000 Theobroma cacao HOM05D001647 ORTHO05D001191 1.4e-11 72.8 41 90.2
ClCG09G019350 Citrullus lanatus HOM05D001647 ORTHO05D001191 1.8e-11 72.4 39 89.7
CsaV3_5G027060 Cucumis sativus L. HOM05D001647 ORTHO05D001191 1.8e-11 72.4 39 89.7
Migut.H00066 Erythranthe guttata HOM05D001647 ORTHO05D001191 1.8e-11 72.4 41 87.8
Nitab4.5_0002077g0020 Nicotiana tabacum HOM05D001647 ORTHO05D001191 1.8e-11 72.4 41 87.8
Sabra16G0223000 Salix brachista HOM05D001647 ORTHO05D001191 1.8e-11 72.4 41 87.8
SGA_v2.0_scaffold2G01173 Striga asiatica HOM05D001647 ORTHO05D001191 1.8e-11 72.4 41 87.8
vmacro05874 Vaccinium macrocarpon HOM05D001647 ORTHO05D001191 1.8e-11 72.4 41 85.4
CANSAT64G2892 Cannabis sativa HOM05D001647 ORTHO05D001191 3.1e-11 71.6 41 82.9
Duzib147G0348 Durio zibethinus HOM05D001647 ORTHO05D001191 3.1e-11 71.6 41 87.8
Phvul.004G005000 Phaseolus vulgaris HOM05D001647 ORTHO05D001191 3.1e-11 71.6 41 82.9
Potri.001G343700 Populus trichocarpa HOM05D001647 ORTHO05D001191 3.1e-11 71.6 41 87.8
PGR142G3896 Punica granatum HOM05D001647 ORTHO05D001191 3.1e-11 71.6 41 87.8
Zm00001eb417950 Zea mays HOM05D001647 ORTHO05D001191 3.1e-11 71.6 41 87.8
Ciclev10014676m.g Citrus clementina HOM05D001647 ORTHO05D001191 4.1e-11 71.2 41 87.8
COL.COLO4_29168 Corchorus olitorius HOM05D000709 ORTHO05D001191 4.1e-11 71.2 41 87.8
Gohir.A05G355000 Gossypium hirsutum HOM05D001647 ORTHO05D001191 4.1e-11 71.2 41 87.8
Gohir.D04G058200 Gossypium hirsutum HOM05D001647 ORTHO05D001191 4.1e-11 71.2 41 87.8
MSTRG.3140 Avicennia marina HOM05D001647 ORTHO05D001191 5.4e-11 70.9 39 89.7
SGA_v2.0_scaffold42G16007 Striga asiatica HOM05D001647 ORTHO05D001191 5.4e-11 70.9 41 85.4
TWI56G0370 Tripterygium wilfordii HOM05D001647 ORTHO05D001191 5.4e-11 70.9 41 85.4
SHI16456 Sapria himalayana HOM05D001647 ORTHO05D001191 7.0e-11 70.5 52 73.1
CSS0005156 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D001191 9.1e-11 70.1 41 87.8
CSS0049659 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D001191 9.1e-11 70.1 41 87.8
Aa31LG2G5110 Aethionema arabicum HOM05D001647 ORTHO05D001191 2.7e-10 68.6 41 82.9
Carub.0005s0598 Capsella rubella HOM05D001647 ORTHO05D001191 2.7e-10 68.6 41 80.5
CARHR148930 Cardamine hirsuta HOM05D001647 ORTHO05D001191 2.7e-10 68.6 41 80.5
FvH4_6g51690 Fragaria vesca HOM05D001647 ORTHO05D001191 2.7e-10 68.6 41 80.5
FAN02G3474 Fragaria x ananassa HOM05D001647 ORTHO05D001191 2.7e-10 68.6 41 80.5
FAN09G0821 Fragaria x ananassa HOM05D001647 ORTHO05D001191 2.7e-10 68.6 41 80.5
FAN14G0654 Fragaria x ananassa HOM05D001647 ORTHO05D001191 2.7e-10 68.6 41 80.5
FAN14G0999 Fragaria x ananassa HOM05D001647 ORTHO05D001191 2.7e-10 68.6 41 80.5
MD09G1023500 Malus domestica HOM05D001647 ORTHO05D001191 2.7e-10 68.6 41 82.9
RcHm_v2.0_Chr2g0173221 Rosa chinensis HOM05D001647 ORTHO05D001191 2.7e-10 68.6 41 80.5
AL5G16970 Arabidopsis lyrata HOM05D001647 ORTHO05D001191 3.5e-10 68.2 41 80.5
AT3G27550 Arabidopsis thaliana HOM05D001647 ORTHO05D001191 3.5e-10 68.2 41 80.5
BcaB07g30153 Brassica carinata HOM05D001647 ORTHO05D001191 4.5e-10 67.8 41 80.5
BcaC03g17472 Brassica carinata HOM05D001647 ORTHO05D001191 4.5e-10 67.8 41 80.5
BcaC06g33804 Brassica carinata HOM05D001647 ORTHO05D001191 4.5e-10 67.8 41 80.5
A02p35540 Brassica napus HOM05D001647 ORTHO05D001191 4.5e-10 67.8 41 80.5
C02p54320 Brassica napus HOM05D001812 ORTHO05D001191 4.5e-10 67.8 41 80.5
BolC2t11499H Brassica oleracea HOM05D001647 ORTHO05D001191 4.5e-10 67.8 41 80.5
BolC7t44184H Brassica oleracea HOM05D000088 ORTHO05D001191 4.5e-10 67.8 41 80.5
BraA02t08556Z Brassica rapa HOM05D001647 ORTHO05D001191 4.5e-10 67.8 41 80.5
BraA06t27031Z Brassica rapa HOM05D001647 ORTHO05D001191 4.5e-10 67.8 41 80.5
Thhalv10004117m.g Eutrema salsugineum HOM05D001647 ORTHO05D001191 4.5e-10 67.8 41 80.5
MD17G1023000 Malus domestica HOM05D001647 ORTHO05D001191 4.5e-10 67.8 41 80.5
Sp2g16720 Schrenkiella parvula HOM05D001647 ORTHO05D001191 4.5e-10 67.8 41 80.5
Gorai.012G064900 Gossypium raimondii HOM05D001647 ORTHO05D001191 5.9e-10 67.4 41 85.4
Prupe.3G293300 Prunus persica HOM05D001647 ORTHO05D001191 7.7e-10 67.0 39 82.1
BcaC06g30978 Brassica carinata HOM05D001647 ORTHO05D001191 1.0e-09 66.6 41 80.5
A06p41080 Brassica napus HOM05D001647 ORTHO05D001191 1.0e-09 66.6 41 80.5
C07p36660 Brassica napus HOM05D001647 ORTHO05D001191 1.0e-09 66.6 41 80.5
FAN05G1297 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.0e-09 66.6 41 78.0
Lj2g0023354 Lotus japonicus HOM05D001647 ORTHO05D001191 1.0e-09 66.6 39 84.6
Nitab4.5_0000065g0270 Nicotiana tabacum HOM05D001647 ORTHO05D001191 1.5e-08 62.8 35 82.9


User provided reference genes

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