Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 4.0e-173 611.3 298 100.0
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 7.5e-140 500.7 297 80.8
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 8.3e-139 497.3 298 79.9
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 1.9e-138 496.1 297 80.5
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 1.7e-136 489.6 297 79.1
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 2.3e-136 489.2 297 77.8
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 6.6e-136 487.6 297 79.8
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 5.6e-135 484.6 297 79.1
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 1.6e-134 483.0 308 76.9
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 1.6e-134 483.0 297 78.8
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 2.1e-134 482.6 294 77.2
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 2.8e-134 482.3 297 78.8
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 6.2e-134 481.1 297 77.8
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 8.1e-134 480.7 291 79.0
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 1.1e-133 480.3 292 79.5
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 1.1e-133 480.3 297 78.8
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 2.3e-133 479.2 297 78.5
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 3.1e-133 478.8 297 78.5
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 8.9e-133 477.2 298 78.2
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.2e-132 476.9 296 76.7
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 2.0e-132 476.1 299 76.6
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 3.4e-132 475.3 291 78.7
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 4.4e-132 474.9 293 76.8
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 4.4e-132 474.9 298 78.2
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 5.8e-132 474.6 297 75.4
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 7.5e-132 474.2 298 77.5
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 9.8e-132 473.8 297 77.4
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 1.3e-131 473.4 296 76.0
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 1.7e-131 473.0 301 77.1
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 6.4e-131 471.1 297 76.8
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 6.4e-131 471.1 291 78.4
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 1.4e-130 469.9 300 75.7
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 1.4e-130 469.9 299 76.3
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 5.4e-130 468.0 286 77.6
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 7.1e-130 467.6 292 76.4
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 1.2e-129 466.8 297 75.4
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 2.1e-129 466.1 332 71.7
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.7e-129 465.7 292 76.4
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 4.6e-129 464.9 298 75.8
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 4.6e-129 464.9 299 74.6
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 6.0e-129 464.5 291 76.3
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 7.8e-129 464.2 291 75.6
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 1.0e-128 463.8 294 75.9
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 1.3e-128 463.4 291 76.3
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 2.3e-128 462.6 324 70.4
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 6.6e-128 461.1 291 75.6
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 6.6e-128 461.1 291 75.9
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 8.6e-128 460.7 297 76.1
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 1.1e-127 460.3 292 75.7
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 2.5e-127 459.1 297 74.4
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.6e-126 456.4 293 75.4
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 2.1e-126 456.1 297 74.7
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 2.8e-126 455.7 323 69.7
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 3.6e-126 455.3 297 74.4
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 3.6e-126 455.3 298 74.5
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 4.7e-126 454.9 282 78.4
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 4.7e-126 454.9 294 75.5
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 4.7e-126 454.9 300 73.0
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 6.2e-126 454.5 299 74.6
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 4.0e-125 451.8 297 74.1
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 4.0e-125 451.8 291 75.3
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 5.2e-125 451.4 298 71.5
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 5.2e-125 451.4 290 72.8
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 5.2e-125 451.4 290 73.8
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 6.8e-125 451.1 299 71.9
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 6.8e-125 451.1 290 72.8
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 6.8e-125 451.1 290 72.4
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 6.8e-125 451.1 290 72.8
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 6.8e-125 451.1 290 72.8
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 8.9e-125 450.7 297 74.1
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 1.2e-124 450.3 291 74.6
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 1.5e-124 449.9 290 72.4
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 1.5e-124 449.9 297 72.7
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 2.6e-124 449.1 298 73.2
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 3.4e-124 448.7 297 72.4
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 9.9e-124 447.2 290 72.8
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 1.1e-122 443.7 281 76.5
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 9.2e-122 440.7 290 71.0
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.2e-121 440.3 297 72.1
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 4.6e-121 438.3 297 71.0
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 1.7e-120 436.4 294 71.1
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 5.1e-120 434.9 290 71.4
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 2.8e-118 429.1 297 71.7
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.1e-117 427.2 297 72.7
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 2.4e-117 426.0 303 69.6
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 6.8e-117 424.5 249 81.9
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 2.6e-116 422.5 239 85.4
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 4.4e-116 421.8 267 77.9
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 9.9e-116 420.6 269 74.7
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 2.7e-113 412.5 298 68.8
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.5e-113 412.1 247 82.2
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 2.3e-112 409.5 237 82.7
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 1.9e-111 406.4 269 74.7
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 6.2e-110 401.4 290 66.2
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 4.0e-109 398.7 234 80.3
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 6.9e-101 371.3 222 79.3
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 9.0e-93 344.4 238 71.0
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 2.7e-89 332.8 287 57.1
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 3.5e-89 332.4 293 57.0
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 8.7e-88 327.8 291 56.0
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.2e-83 313.2 404 46.5
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 1.4e-82 310.5 281 60.9
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 5.1e-80 302.0 207 70.0
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 4.2e-66 255.8 280 51.8
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 6.5e-59 231.9 258 53.9
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 6.7e-56 221.9 146 76.0
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 5.7e-55 218.8 291 39.5
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 9.7e-55 218.0 249 46.6
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 4.2e-50 202.6 119 80.7
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 6.1e-49 198.7 192 55.7
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 2.0e-47 193.7 117 73.5
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 1.1e-42 177.9 223 47.5
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 2.2e-38 163.7 175 53.1
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 2.3e-35 153.7 219 42.5
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 5.2e-32 142.5 114 63.2
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 1.1e-26 124.8 72 80.6
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 1.1e-26 124.8 81 77.8
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 2.0e-20 104.0 52 90.4
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 8.6e-19 98.6 53 77.4
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 5.2e-16 89.4 60 73.3
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.4e-15 86.7 55 72.7
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 3.4e-15 86.7 52 75.0
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 2.2e-14 84.0 189 34.4
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 3.2e-13 80.1 59 64.4
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 1.2e-12 78.2 109 41.3
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 5.1e-11 72.8 46 69.6
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 9.5e-10 68.6 173 31.2
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 6.2e-09 65.9 185 30.8
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 3.1e-08 63.5 166 28.9
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 4.0e-08 63.2 64 48.4
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 4.0e-08 63.2 165 29.1
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 1.5e-07 61.2 193 27.5
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 1.7e-06 57.8 29 79.3
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 2.2e-06 57.4 84 44.0


User provided reference genes

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