Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G065400 Gossypium raimondii HOM05D006835 ORTHO05D008587 2.0e-80 303.5 333 100.0
Gohir.D13G058000 Gossypium hirsutum HOM05D006835 ORTHO05D008587 3.7e-79 299.3 333 99.4
Gohir.A13G063900 Gossypium hirsutum HOM05D006835 ORTHO05D008587 2.7e-77 293.1 333 98.8
Thecc.02G149200 Theobroma cacao HOM05D006835 ORTHO05D008587 1.0e-68 264.6 333 93.4
COL.COLO4_04808 Corchorus olitorius HOM05D006835 ORTHO05D008587 1.8e-65 253.8 333 91.9
Duzib132G0412 Durio zibethinus HOM05D006835 ORTHO05D008587 3.1e-65 253.1 333 89.8
Haze_01949 Corylus avellana HOM05D006835 ORTHO05D008587 9.5e-59 231.5 334 84.7
QL11p057002 Quercus lobata HOM05D006835 ORTHO05D008587 3.6e-58 229.6 332 85.5
CiPaw.06G113200 Carya illinoinensis HOM05D006835 ORTHO05D008587 4.0e-57 226.1 330 70.6
Dinv41853 Davidia involucrata HOM05D006835 ORTHO05D008587 7.8e-53 211.8 333 72.7
Manes.15G113100 Manihot esculenta HOM05D006835 ORTHO05D008587 1.3e-52 211.1 331 81.3
Prupe.8G183100 Prunus persica HOM05D006835 ORTHO05D008587 3.9e-52 209.5 328 85.4
Atru.chr5.3592 Acer truncatum HOM05D006835 ORTHO05D008587 8.6e-52 208.4 328 86.0
Cpa.g.sc60.7 Carica papaya HOM05D006835 ORTHO05D008587 8.6e-52 208.4 329 85.1
Cc05_g09290 Coffea canephora HOM05D006835 ORTHO05D008587 8.6e-52 208.4 333 83.8
Glyma.13G141500 Glycine max HOM05D006835 ORTHO05D008587 8.6e-52 208.4 332 83.4
Ciclev10028825m.g Citrus clementina HOM05D006835 ORTHO05D008587 3.3e-51 206.5 328 82.0
GSVIVG01023845001 Vitis vinifera HOM05D006835 ORTHO05D008587 2.1e-50 203.8 329 85.1
Lalb_Chr09g0328551 Lupinus albus HOM05D006835 ORTHO05D008587 2.8e-50 203.4 327 82.6
MELO3C015685.2 Cucumis melo HOM05D006835 ORTHO05D008587 8.1e-50 201.8 327 76.5
Potri.004G209400 Populus trichocarpa HOM05D006835 ORTHO05D008587 8.1e-50 201.8 334 80.2
Hma1.2p1_0332F.1_g127850 Hydrangea macrophylla HOM05D006835 ORTHO05D008587 1.1e-49 201.4 329 84.8
CANSAT25G2962 Cannabis sativa HOM05D006835 ORTHO05D008587 1.4e-49 201.1 327 82.9
CANSAT25G1616 Cannabis sativa HOM05D006835 ORTHO05D008587 2.3e-49 200.3 327 82.6
FAN27G3385 Fragaria x ananassa HOM05D006835 ORTHO05D008587 4.0e-49 199.5 329 83.6
RcHm_v2.0_Chr6g0281661 Rosa chinensis HOM05D006835 ORTHO05D008587 4.0e-49 199.5 328 83.2
CsaV3_7G002240 Cucumis sativus L. HOM05D006835 ORTHO05D008587 5.2e-49 199.1 327 75.5
Oeu034382.1 Olea europaea HOM05D006835 ORTHO05D008587 6.8e-49 198.7 330 81.5
PGR042G3426 Punica granatum HOM05D006835 ORTHO05D008587 8.9e-49 198.4 327 78.3
ClCG02G003170 Citrullus lanatus HOM05D006835 ORTHO05D008587 1.5e-48 197.6 327 78.0
FAN24G3450 Fragaria x ananassa HOM05D006835 ORTHO05D008587 1.5e-48 197.6 329 83.3
Rhsim12G0002300 Rhododendron simsii HOM05D006835 ORTHO05D008587 1.5e-48 197.6 324 82.7
MBI15_g25631_MAGBIO Magnolia biondii HOM05D006835 ORTHO05D008587 2.6e-48 196.8 324 76.9
Psat7g128400 Pisum sativum HOM05D006835 ORTHO05D008587 3.4e-48 196.4 332 78.9
Nn6g31561 Nelumbo nucifera HOM05D006835 ORTHO05D008587 4.4e-48 196.1 333 84.1
arahy.Tifrunner.gnm1.ann1.9A9DF4 Arachis hypogaea HOM05D006835 ORTHO05D008587 7.6e-48 195.3 329 83.0
arahy.Tifrunner.gnm1.ann1.N15UBW Arachis hypogaea HOM05D006835 ORTHO05D008587 7.6e-48 195.3 329 83.0
MD10G1144800 Malus domestica HOM05D006835 ORTHO05D008587 7.6e-48 195.3 315 86.3
Sabra04G0141200 Salix brachista HOM05D006835 ORTHO05D008587 7.6e-48 195.3 334 79.9
Lj4g0005221 Lotus japonicus HOM05D006835 ORTHO05D008587 1.3e-47 194.5 328 81.1
Actinidia17982 Actinidia chinensis HOM05D006835 ORTHO05D008587 1.7e-47 194.1 333 81.1
FvH4_2g17170 Fragaria vesca HOM05D006835 ORTHO05D008587 6.4e-47 192.2 316 85.1
Potri.009G170300 Populus trichocarpa HOM05D006835 ORTHO05D008587 2.4e-46 190.3 324 83.3
Ca_18740_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 3.2e-46 189.9 332 79.8
Ca_30877_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 3.2e-46 189.9 332 79.8
TWI75G0734 Tripterygium wilfordii HOM05D006835 ORTHO05D008587 5.4e-46 189.1 326 81.9
Medtr4g084630 Medicago truncatula HOM05D006835 ORTHO05D008587 1.2e-45 188.0 325 79.7
Peaxi162Scf00078g00114 Petunia axillaris HOM05D006835 ORTHO05D008587 3.5e-45 186.4 326 80.4
Phvul.007G148200 Phaseolus vulgaris HOM05D006835 ORTHO05D008587 3.5e-45 186.4 333 80.5
Eucgr.H05012 Eucalyptus grandis HOM05D006835 ORTHO05D008587 4.6e-45 186.0 333 80.2
Sed0026152 Sechium edule HOM05D006835 ORTHO05D008587 1.3e-44 184.5 327 75.5
Atru.BG.81.p Acer truncatum HOM05D006835 ORTHO05D008587 3.0e-44 183.3 312 87.2
MSTRG.1776 Avicennia marina HOM05D006835 ORTHO05D008587 3.0e-44 183.3 326 83.4
arahy.Tifrunner.gnm1.ann1.B8P5ZC Arachis hypogaea HOM05D006835 ORTHO05D008587 5.1e-44 182.6 329 81.2
Sed0006636 Sechium edule HOM05D006835 ORTHO05D008587 5.1e-44 182.6 327 73.4
Ah.01g010510 Amaranthus hybridus HOM05D006835 ORTHO05D008587 1.1e-43 181.4 326 81.3
arahy.Tifrunner.gnm1.ann1.ATV9YP Arachis hypogaea HOM05D006835 ORTHO05D008587 1.9e-43 180.6 329 81.2
ECA247G0195 Erigeron canadensis HOM05D006835 ORTHO05D008587 1.9e-43 180.6 329 77.8
Sopen11g019950 Solanum pennellii HOM05D006835 ORTHO05D008587 2.5e-43 180.3 326 80.1
PGSC0003DMG400023133 Solanum tuberosum HOM05D006835 ORTHO05D008587 2.5e-43 180.3 326 79.8
EL10Ac9g21569 Beta vulgaris HOM05D006835 ORTHO05D008587 9.6e-43 178.3 326 78.2
Migut.E01343 Erythranthe guttata HOM05D006835 ORTHO05D008587 2.1e-42 177.2 325 78.8
CAN.G430.3 Capsicum annuum HOM05D006835 ORTHO05D008587 2.8e-42 176.8 326 79.1
Sc08g0001990 Simmondsia chinensis HOM05D006835 ORTHO05D008587 2.8e-42 176.8 327 77.7
Lsat_1_v5_gn_1_20201 Lactuca sativa HOM05D006835 ORTHO05D008587 3.6e-42 176.4 327 78.3
Solyc11g044360.3 Solanum lycopersicum HOM05D006835 ORTHO05D008587 4.7e-42 176.0 317 80.8
TPR.G31217 Trifolium pratense HOM05D006835 ORTHO05D008587 3.1e-41 173.3 373 64.9
SalBow8G5127 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.5e-40 171.0 316 78.2
unitig_744.g24691 Utricularia gibba HOM05D006835 ORTHO05D008587 4.4e-40 169.5 322 77.6
AUR62010216 Chenopodium quinoa HOM05D006835 ORTHO05D008587 7.6e-40 168.7 327 77.4
AUR62013212 Chenopodium quinoa HOM05D006835 ORTHO05D008587 7.6e-40 168.7 327 77.4
Aqoxy6G03057 Aquilegia oxysepala HOM05D006835 ORTHO05D008587 3.8e-39 166.4 328 79.6
Nitab4.5_0000079g0110 Nicotiana tabacum HOM05D006835 ORTHO05D008587 1.4e-38 164.5 326 80.4
PSO541G0957 Papaver somniferum HOM05D006835 ORTHO05D008587 5.4e-38 162.5 341 77.1
Nitab4.5_0004387g0030 Nicotiana tabacum HOM05D006835 ORTHO05D008587 1.2e-37 161.4 326 79.8
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 6.0e-37 159.1 334 47.6
Hund06347 Selenicereus undatus HOM05D006835 ORTHO05D008587 1.0e-36 158.3 326 76.1
Glyma.10G054400 Glycine max HOM05D006835 ORTHO05D008587 1.3e-36 157.9 302 84.4
SGA_v2.0_scaffold144G35876 Striga asiatica HOM05D006835 ORTHO05D008587 1.7e-36 157.5 317 80.1
DCAR_006210 Daucus carota HOM05D006835 ORTHO05D008587 3.9e-36 156.4 330 70.0
ATR0605G237 Amborella trichopoda HOM05D006835 ORTHO05D008587 5.1e-36 156.0 322 69.3
TPR.G38303 Trifolium pratense HOM05D006835 ORTHO05D008587 5.6e-35 152.5 333 72.7
Lsat_1_v5_gn_8_70721 Lactuca sativa HOM05D006835 ORTHO05D008587 1.6e-34 151.0 309 79.0
Aa31LG6G16920 Aethionema arabicum HOM05D006835 ORTHO05D008587 1.1e-33 148.3 336 65.2
CARHR293940 Cardamine hirsuta HOM05D006835 ORTHO05D008587 6.9e-33 145.6 334 66.5
Sp7g37590 Schrenkiella parvula HOM05D006835 ORTHO05D008587 2.0e-32 144.1 331 66.2
Carub.0007s0005 Capsella rubella HOM05D006835 ORTHO05D008587 2.2e-31 140.6 327 65.1
MD05G1145000 Malus domestica HOM05D006835 ORTHO05D008587 2.2e-31 140.6 296 82.4
AT4G38160 Arabidopsis thaliana HOM05D006835 ORTHO05D008587 4.9e-31 139.4 331 71.3
TAR381G0995 Trochodendron aralioides HOM05D006835 ORTHO05D008587 6.4e-31 139.0 89 76.4
Thhalv10004546m.g Eutrema salsugineum HOM05D006835 ORTHO05D008587 1.9e-30 137.5 328 66.5
AL7G10060 Arabidopsis lyrata HOM05D006835 ORTHO05D008587 3.2e-30 136.7 328 64.9
VMungo1309G0603 Vigna mungo HOM05D006835 ORTHO05D008587 7.1e-30 135.6 286 85.3
CSS0014591 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 1.7e-28 131.0 279 83.9
FAN15G1646 Fragaria x ananassa HOM05D006835 ORTHO05D008587 1.7e-28 131.0 80 77.5
Ah.02g121760 Amaranthus hybridus HOM05D006835 ORTHO05D008587 1.5e-27 127.9 87 64.4
CDE04G0383 Ceratophyllum demersum HOM05D006835 ORTHO05D008587 7.3e-27 125.6 322 53.4
ClCG02G010730 Citrullus lanatus HOM05D006835 ORTHO05D008587 7.3e-27 125.6 296 40.9
C07p46880 Brassica napus HOM05D006835 ORTHO05D008587 2.8e-26 123.6 329 68.7
BolC7t45204H Brassica oleracea HOM05D006835 ORTHO05D008587 2.8e-26 123.6 329 68.7
A03p48790 Brassica napus HOM05D006835 ORTHO05D008587 3.6e-26 123.2 327 68.5
BraA03t13979Z Brassica rapa HOM05D006835 ORTHO05D008587 8.1e-26 122.1 327 68.5
CSS0013930 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 9.3e-22 108.6 65 73.8
Os08g0515800 Oryza sativa ssp. japonica HOM05D006835 ORTHO05D008587 6.0e-21 105.9 322 59.3
vmacro17000 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 6.0e-21 105.9 322 42.5
SalBow3G3248 Salvia bowleyana HOM05D006835 ORTHO05D008587 2.3e-20 104.0 278 78.1
SalBow4G0758 Salvia bowleyana HOM05D006835 ORTHO05D008587 3.3e-19 100.1 278 77.7
TAR381G1325 Trochodendron aralioides HOM05D006835 ORTHO05D008587 9.6e-19 98.6 59 74.6
SEGI_34779 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 1.1e-17 95.1 62 64.5
SalBow8G1833 Salvia bowleyana HOM05D006835 ORTHO05D008587 6.9e-17 92.4 59 72.9
HPP92_022026 Vanilla planifolia HOM05D006835 ORTHO05D008587 4.5e-16 89.7 61 65.6
AagrBONN_evm.TU.Sc2ySwM_344.3279 Anthoceros agrestis HOM05D006835 ORTHO05D008587 1.6e-10 71.2 74 48.6
Mapoly0015s0200 Marchantia polymorpha HOM05D006835 ORTHO05D008587 1.4e-09 68.2 86 40.7
SEGI_18890 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 6.9e-09 65.9 42 64.3
Actinidia20590 Actinidia chinensis HOM05D006835 ORTHO05D008587 9.0e-09 65.5 44 65.9
vmacro17159 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.0e-07 62.0 44 61.4
vmacro17002 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.3e-07 61.6 89 42.7
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 6.5e-07 59.3 61 41.0
arahy.Tifrunner.gnm1.ann1.XHCR8J Arachis hypogaea HOM05D005956 ORTHO05D007197 1.4e-06 58.2 61 41.0
Hma1.2p1_0244F.1_g101100 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 2.5e-06 57.4 51 43.1
LjContig00482g0022414 Lotus japonicus HOM05D005956 ORTHO05D007197 2.5e-06 57.4 61 42.6
Pp3c18_18510 Physcomitrium patens HOM05D005956 ORTHO05D007197 2.5e-06 57.4 61 44.3
Hma1.2p1_2405F.1_g321440 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 3.2e-06 57.0 51 41.2
PGR083G0114 Punica granatum HOM05D005956 ORTHO05D007197 3.2e-06 57.0 59 40.7
VMungo1080G0145 Vigna mungo HOM05D005956 ORTHO05D007197 3.2e-06 57.0 61 39.3
CANSAT25G2219 Cannabis sativa HOM05D002901 ORTHO05D003183 4.2e-06 56.6 55 40.0
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 4.2e-06 56.6 58 43.1
TPR.G21350 Trifolium pratense HOM05D005956 ORTHO05D007197 4.2e-06 56.6 61 39.3
arahy.Tifrunner.gnm1.ann1.12WCBU Arachis hypogaea HOM05D005956 ORTHO05D007197 5.5e-06 56.2 61 41.0
ECA247G3292 Erigeron canadensis HOM05D002901 ORTHO05D003183 5.5e-06 56.2 50 42.0
HanXRQChr15g0466591 Helianthus annuus HOM05D002901 ORTHO05D003183 5.5e-06 56.2 55 38.2
Lsat_1_v5_gn_9_1861 Lactuca sativa HOM05D002901 ORTHO05D003183 7.2e-06 55.8 50 42.0
vmacro19244 Vaccinium macrocarpon HOM05D002901 ORTHO05D003183 9.3e-06 55.5 50 42.0


User provided reference genes

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