Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 5.3e-119 431.0 215 100.0
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 7.6e-118 427.2 215 99.1
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.1e-116 423.3 215 97.7
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 2.3e-106 389.0 216 90.3
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 2.3e-106 389.0 216 90.3
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 3.7e-104 381.7 221 88.2
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.1e-92 343.6 216 77.3
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 5.5e-92 341.3 216 77.3
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 9.4e-92 340.5 216 76.9
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 8.8e-90 334.0 222 77.0
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 2.2e-88 329.3 216 74.5
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 8.2e-88 327.4 213 76.1
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 8.2e-88 327.4 218 72.5
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 1.4e-87 326.6 216 75.5
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 3.1e-87 325.5 216 72.2
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 4.1e-87 325.1 214 74.8
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 9.1e-87 323.9 214 73.4
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 9.1e-87 323.9 214 73.4
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 4.5e-86 321.6 216 72.2
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 5.9e-86 321.2 222 73.4
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 7.7e-86 320.9 216 72.2
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 7.7e-86 320.9 216 74.5
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 7.7e-86 320.9 216 75.0
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.0e-85 320.5 216 71.3
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 1.7e-85 319.7 214 72.9
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 1.1e-84 317.0 216 69.9
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 1.5e-84 316.6 214 70.6
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 1.9e-84 316.2 216 71.3
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 3.2e-84 315.5 218 73.9
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 5.5e-84 314.7 216 73.6
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 5.5e-84 314.7 172 88.4
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 5.5e-84 314.7 215 71.6
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 5.5e-84 314.7 217 71.4
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 7.2e-84 314.3 216 70.4
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 9.4e-84 313.9 214 72.0
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 9.4e-84 313.9 214 72.4
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.2e-83 313.5 216 69.9
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 1.2e-83 313.5 216 70.4
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 1.2e-83 313.5 215 73.0
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.6e-83 313.2 213 74.2
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 1.6e-83 313.2 216 71.8
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 2.7e-83 312.4 216 69.9
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 4.7e-83 311.6 216 70.8
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 8.0e-83 310.8 219 71.7
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 8.0e-83 310.8 215 73.0
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 8.0e-83 310.8 217 69.1
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 1.0e-82 310.5 222 67.6
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 1.8e-82 309.7 216 71.8
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 2.3e-82 309.3 218 69.7
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 6.7e-82 307.8 220 71.4
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 8.8e-82 307.4 218 71.6
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 1.1e-81 307.0 220 68.6
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 1.5e-81 306.6 216 71.8
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 2.6e-81 305.8 214 71.5
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 3.3e-81 305.4 214 69.2
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 4.4e-81 305.1 217 70.0
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 5.7e-81 304.7 223 65.9
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.7e-80 303.1 218 71.1
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 2.2e-80 302.8 213 70.9
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 2.2e-80 302.8 219 68.5
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 2.8e-80 302.4 226 68.6
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 2.8e-80 302.4 228 67.5
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 6.3e-80 301.2 223 65.9
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 6.3e-80 301.2 216 69.4
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 8.2e-80 300.8 213 68.1
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 8.2e-80 300.8 217 69.6
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.1e-79 300.4 214 70.1
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 2.4e-79 299.3 228 67.1
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 3.1e-79 298.9 217 70.0
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 4.1e-79 298.5 199 74.9
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 9.1e-79 297.4 199 72.9
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 1.2e-78 297.0 224 64.7
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 1.2e-78 297.0 224 64.7
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 1.2e-78 297.0 221 65.6
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.2e-78 297.0 212 70.3
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 1.6e-78 296.6 214 66.8
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 2.7e-78 295.8 220 65.5
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 3.5e-78 295.4 220 67.7
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 4.5e-78 295.0 222 65.8
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 4.5e-78 295.0 218 67.4
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 7.7e-78 294.3 216 69.9
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 1.0e-77 293.9 224 64.3
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 1.0e-77 293.9 224 64.3
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 1.0e-77 293.9 224 64.3
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 1.7e-77 293.1 216 67.1
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 5.0e-77 291.6 214 65.9
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 6.5e-77 291.2 211 68.2
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 6.5e-77 291.2 206 68.4
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 6.5e-77 291.2 214 69.2
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 8.5e-77 290.8 224 63.8
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 1.9e-76 289.7 221 65.6
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 1.9e-76 289.7 213 67.1
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 3.2e-76 288.9 224 64.3
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 3.2e-76 288.9 204 67.6
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 4.2e-76 288.5 218 66.1
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 9.4e-76 287.3 205 71.2
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.1e-75 286.2 200 67.0
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 1.8e-74 283.1 184 77.2
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 4.0e-74 282.0 206 66.5
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 5.2e-74 281.6 202 70.3
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 6.8e-74 281.2 188 71.3
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 8.8e-74 280.8 187 70.6
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 8.8e-74 280.8 216 64.8
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 8.8e-74 280.8 209 64.6
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 2.0e-73 279.6 217 68.7
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 4.4e-73 278.5 192 71.4
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 9.8e-73 277.3 216 64.8
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 2.8e-72 275.8 247 59.1
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 9.1e-71 270.8 223 63.2
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.2e-70 270.4 146 89.0
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 4.5e-70 268.5 223 62.8
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 2.9e-69 265.8 189 67.7
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 5.0e-69 265.0 212 60.4
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 1.9e-68 263.1 210 62.9
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 6.1e-67 258.1 218 58.7
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.2e-65 253.8 256 55.1
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.2e-65 253.8 256 55.1
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 3.4e-65 252.3 172 70.3
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 9.8e-65 250.8 178 68.5
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 1.7e-64 250.0 220 60.5
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 1.7e-64 250.0 214 57.9
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 6.3e-64 248.1 182 66.5
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 5.4e-63 245.0 145 81.4
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 2.4e-55 219.5 193 59.1
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 1.5e-52 210.3 143 70.6
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 6.2e-51 204.9 157 61.8
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 2.6e-49 199.5 150 69.3
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 2.9e-48 196.1 142 64.1
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 8.3e-48 194.5 139 69.1
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 9.2e-47 191.0 217 42.9
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 6.0e-46 188.3 220 43.2
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 7.8e-46 188.0 183 50.3
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 5.6e-44 181.8 125 68.8
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 1.2e-41 174.1 142 57.7
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 1.2e-41 174.1 143 62.2
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 9.2e-39 164.5 124 66.1
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 1.6e-38 163.7 107 71.0
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 2.7e-38 162.9 203 42.4
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 8.6e-37 157.9 177 46.3
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 2.8e-35 152.9 143 46.9
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 8.1e-35 151.4 206 39.3
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 5.2e-34 148.7 213 45.5
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 6.8e-34 148.3 141 48.9
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 3.9e-29 132.5 197 39.6
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 2.6e-25 119.8 77 70.1
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 2.6e-25 119.8 75 70.7
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 3.5e-22 109.4 152 37.5
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 8.7e-21 104.8 76 65.8
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 4.3e-20 102.4 75 66.7
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 2.1e-19 100.1 91 61.5
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 8.1e-19 98.2 75 64.0
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 3.2e-15 86.3 69 55.1
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 4.2e-15 85.9 49 79.6
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 3.5e-14 82.8 58 65.5
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 3.9e-13 79.3 49 67.3
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 1.3e-11 74.3 71 60.6
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 1.3e-11 74.3 76 53.9
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 2.6e-09 66.6 55 58.2
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 3.4e-09 66.2 42 73.8
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 2.9e-08 63.2 44 65.9
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 1.4e-07 60.8 33 78.8
PSO447G0101 Papaver somniferum HOM05D004585 ORTHO05D037280 5.5e-07 58.9 36 72.2
HPP92_019575 Vanilla planifolia HOM05D000285 ORTHO05D000241 2.1e-06 57.0 92 32.6
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 3.5e-06 56.2 87 34.5
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 3.5e-06 56.2 87 34.5
MBI10_g26097_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D001253 6.0e-06 55.5 88 31.8
Manes.05G069100 Manihot esculenta HOM05D001495 ORTHO05D001391 7.9e-06 55.1 113 29.2
Nitab4.5_0004242g0030 Nicotiana tabacum HOM05D003938 ORTHO05D004759 7.9e-06 55.1 83 37.3
vmacro02513 Vaccinium macrocarpon HOM05D001495 ORTHO05D001391 7.9e-06 55.1 74 35.1


User provided reference genes

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