Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 4.1e-284 980.7 497 100.0
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 1.6e-267 925.6 497 95.4
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 1.0e-234 816.6 511 83.0
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 8.5e-229 797.0 509 80.9
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 1.7e-224 782.7 508 81.3
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 2.8e-216 755.4 497 81.9
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 5.3e-207 724.5 518 74.5
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 8.8e-202 707.2 527 71.0
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 4.8e-200 701.4 513 72.3
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 5.0e-197 691.4 527 70.2
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 2.5e-196 689.1 499 71.9
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 2.1e-195 686.0 527 69.6
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 6.1e-195 684.5 527 69.3
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 8.8e-194 680.6 498 72.9
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 8.8e-194 680.6 508 70.7
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 2.8e-192 675.6 507 71.2
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 1.8e-191 672.9 506 71.7
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.8e-191 672.9 503 71.0
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 5.4e-191 671.4 501 72.1
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 2.7e-190 669.1 457 76.1
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 2.3e-189 666.0 512 69.1
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 9.5e-188 660.6 518 68.3
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 6.1e-187 657.9 498 71.3
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 8.0e-187 657.5 510 69.8
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 1.4e-186 656.8 502 69.9
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 1.8e-186 656.4 457 75.3
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 5.2e-186 654.8 523 66.7
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 4.4e-185 651.7 536 67.0
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 5.7e-185 651.4 480 72.5
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.8e-183 646.4 559 63.5
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 2.4e-183 646.0 505 68.9
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 2.7e-182 642.5 501 68.1
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 7.8e-182 641.0 500 67.0
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 1.7e-181 639.8 474 68.8
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 2.3e-181 639.4 504 68.1
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 3.0e-181 639.0 518 67.2
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 3.9e-181 638.6 493 70.0
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 5.0e-181 638.3 478 69.5
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 6.6e-181 637.9 498 67.1
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 8.6e-181 637.5 488 67.8
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 1.9e-180 636.3 508 67.7
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 9.5e-180 634.0 477 68.3
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 9.5e-180 634.0 477 68.3
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 1.2e-179 633.6 461 70.3
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 6.2e-179 631.3 501 66.9
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 6.2e-179 631.3 477 68.3
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 2.3e-178 629.4 477 69.2
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 8.9e-178 627.5 508 67.3
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 1.2e-177 627.1 521 65.6
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 2.6e-177 625.9 481 67.6
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 3.4e-177 625.5 501 65.1
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 4.4e-177 625.2 511 66.1
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 7.5e-177 624.4 509 66.2
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 1.3e-176 623.6 513 65.9
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.2e-176 622.9 499 67.7
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 6.4e-176 621.3 503 65.8
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.4e-175 620.2 448 70.5
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 3.2e-175 619.0 511 65.6
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 5.4e-175 618.2 527 64.9
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 5.4e-175 618.2 451 69.8
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 7.0e-175 617.8 411 77.4
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.2e-174 617.1 498 67.9
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.6e-174 616.7 508 64.4
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 1.6e-174 616.7 498 67.9
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 2.7e-174 615.9 510 64.5
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 7.8e-174 614.4 499 67.3
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 2.3e-173 612.8 516 64.9
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 2.3e-173 612.8 499 67.1
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 5.0e-173 611.7 499 67.3
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 6.6e-173 611.3 494 64.8
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 4.3e-172 608.6 507 65.1
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 6.2e-171 604.7 487 68.4
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 1.5e-169 600.1 511 63.6
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 1.5e-169 600.1 480 65.8
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 1.7e-168 596.7 497 64.4
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 6.4e-168 594.7 480 64.4
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 6.4e-168 594.7 425 72.2
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 3.2e-167 592.4 430 71.2
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 1.0e-165 587.4 477 64.8
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 1.7e-165 586.6 444 69.6
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 3.9e-165 585.5 415 74.5
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 5.1e-165 585.1 477 64.6
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 1.2e-161 573.9 457 67.2
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 5.4e-159 565.1 491 62.3
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 4.6e-158 562.0 497 61.8
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 6.0e-158 561.6 563 56.7
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 1.1e-154 550.8 453 65.6
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 3.1e-154 549.3 372 73.9
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 3.5e-150 535.8 469 61.2
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 2.5e-148 529.6 497 57.9
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 3.6e-147 525.8 438 63.5
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 8.4e-144 514.6 391 70.1
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 3.5e-142 509.2 400 63.5
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 1.4e-138 497.3 444 62.2
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 9.9e-137 491.1 428 61.2
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 1.6e-131 473.8 368 64.7
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 4.8e-131 472.2 451 56.3
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 8.1e-131 471.5 450 56.2
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 6.0e-126 455.3 346 67.6
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 6.7e-125 451.8 321 70.1
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 1.7e-120 437.2 380 60.0
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 2.2e-112 410.2 355 59.4
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 1.1e-111 407.9 411 54.7
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 7.2e-111 405.2 457 50.5
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 7.4e-108 395.2 499 46.9
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 9.1e-106 388.3 434 50.7
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.3e-104 384.4 406 51.7
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 1.7e-104 384.0 290 70.0
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.5e-103 380.2 268 71.6
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 5.5e-103 379.0 469 48.2
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 1.2e-94 351.3 394 49.0
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 1.4e-93 347.8 371 55.5
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.2e-83 313.9 348 52.6
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 4.5e-81 306.2 446 41.7
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 2.5e-71 273.9 294 53.1
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 1.2e-68 265.0 376 43.1
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 7.8e-65 252.3 463 35.9
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 7.0e-58 229.2 481 33.9
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 2.7e-57 227.3 295 46.8
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 1.9e-39 167.9 128 70.3
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 2.1e-38 164.5 141 66.0
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 1.2e-36 158.7 189 50.8
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 5.1e-32 143.3 110 69.1
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 2.3e-24 117.9 104 56.7
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 3.0e-24 117.5 237 33.8
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 7.1e-18 96.3 219 33.8
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 2.1e-17 94.7 159 44.7
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 4.6e-17 93.6 124 49.2
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 2.5e-15 87.8 67 59.7
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.4e-13 81.3 89 49.4
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 5.3e-13 80.1 64 67.2
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 6.9e-13 79.7 101 44.6
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 2.9e-11 74.3 62 56.5
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 5.5e-10 70.1 148 36.5
Psat5g095160 Pisum sativum HOM05D001167 ORTHO05D036681 1.9e-07 61.6 74 52.7
SMO197G0109 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 3.7e-06 57.4 142 28.9
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 4.8e-06 57.0 43 55.8


User provided reference genes

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