Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 3.5e-74 281.6 145 100.0
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.7e-73 279.3 144 99.3
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 6.6e-73 277.3 143 99.3
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 6.6e-73 277.3 144 98.6
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.8e-71 271.9 143 97.2
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 1.5e-69 266.2 144 93.8
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 1.5e-69 266.2 144 93.8
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 1.5e-69 266.2 144 93.8
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 1.5e-69 266.2 144 93.8
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 2.2e-68 262.3 144 90.3
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 2.2e-68 262.3 144 90.3
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 2.2e-68 262.3 144 90.3
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 2.2e-68 262.3 144 90.3
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 2.2e-68 262.3 144 90.3
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 2.2e-68 262.3 144 90.3
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 2.2e-68 262.3 144 90.3
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 2.2e-68 262.3 144 90.3
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 2.2e-68 262.3 144 90.3
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.1e-67 260.0 144 93.8
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 3.2e-67 258.5 144 89.6
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 3.2e-67 258.5 144 89.6
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 5.4e-67 257.7 145 89.7
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 4.6e-66 254.6 144 90.3
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 1.7e-65 252.7 143 89.5
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 2.3e-65 252.3 144 88.9
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 3.0e-65 251.9 144 88.2
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 3.0e-65 251.9 144 87.5
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 3.0e-65 251.9 144 87.5
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.1e-64 250.0 138 90.6
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 1.1e-64 250.0 144 87.5
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.9e-64 249.2 144 86.8
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 2.5e-64 248.8 144 86.8
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 3.3e-64 248.4 144 87.5
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 4.3e-64 248.1 146 87.0
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 9.5e-64 246.9 144 86.1
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.2e-63 246.5 138 89.1
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-63 246.5 144 86.1
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-63 246.5 144 86.1
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-63 246.5 144 86.1
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-63 246.5 144 86.1
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-63 246.5 144 86.1
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-63 246.5 144 86.1
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-63 246.5 144 86.1
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 4.7e-63 244.6 144 85.4
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 6.2e-63 244.2 144 84.0
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 1.1e-62 243.4 144 86.1
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 1.4e-62 243.0 144 84.0
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.8e-62 242.7 144 85.4
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 6.8e-62 240.7 143 84.6
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 1.5e-61 239.6 144 82.6
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 2.0e-61 239.2 144 86.1
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 9.9e-61 236.9 144 81.9
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 9.9e-61 236.9 144 82.6
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 9.9e-61 236.9 144 82.6
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 9.9e-61 236.9 144 82.6
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 6.4e-60 234.2 144 81.9
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 3.2e-59 231.9 143 82.5
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 5.4e-59 231.1 129 92.2
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 1.2e-58 229.9 143 81.1
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.6e-58 229.6 122 95.9
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.7e-58 228.8 117 97.4
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 6.2e-55 217.6 131 83.2
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 1.8e-54 216.1 144 79.2
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 6.8e-54 214.2 143 74.8
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 6.8e-54 214.2 143 74.8
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 8.9e-54 213.8 122 89.3
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 8.9e-54 213.8 125 87.2
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 9.9e-53 210.3 139 76.3
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 9.2e-51 203.8 125 83.2
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 2.7e-50 202.2 119 84.9
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 6.6e-49 197.6 115 85.2
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.5e-48 195.7 109 89.9
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 1.2e-45 186.8 137 69.3
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 3.4e-45 185.3 103 91.3
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 3.4e-45 185.3 137 69.3
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 5.8e-45 184.5 143 67.1
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 9.9e-45 183.7 137 67.9
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.2e-44 182.6 93 97.8
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 2.9e-44 182.2 113 78.8
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 1.4e-43 179.9 118 78.0
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 9.3e-43 177.2 144 66.7
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.2e-42 176.8 143 66.4
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 1.0e-41 173.7 98 88.8
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 1.7e-41 172.9 112 78.6
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 1.7e-41 172.9 144 63.9
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 1.7e-41 172.9 144 63.9
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 3.0e-41 172.2 117 75.2
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 3.0e-41 172.2 117 76.1
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 5.1e-41 171.4 143 65.0
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 2.5e-40 169.1 117 73.5
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 2.5e-40 169.1 115 73.0
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.3e-40 168.3 93 90.3
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 5.6e-40 167.9 103 83.5
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.1e-39 166.0 98 81.6
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 3.4e-37 158.7 133 63.9
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 7.6e-37 157.5 129 61.2
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 3.2e-35 152.1 85 89.4
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 7.1e-35 151.0 98 77.6
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 7.1e-35 151.0 98 77.6
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 7.1e-35 151.0 98 77.6
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 9.3e-35 150.6 98 77.6
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 7.9e-34 147.5 144 60.4
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 3.9e-33 145.2 123 63.4
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 8.7e-33 144.1 79 91.1
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 1.6e-31 139.8 120 62.5
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 1.6e-31 139.8 120 62.5
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 1.6e-31 139.8 120 62.5
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 1.6e-31 139.8 120 62.5
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 1.6e-31 139.8 120 62.5
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 2.8e-31 139.0 98 74.5
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 2.9e-28 129.0 84 75.0
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 1.1e-27 127.1 80 77.5
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 1.2e-26 123.6 83 73.5
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.1e-26 122.9 95 66.3
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 3.5e-26 122.1 140 48.6
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 1.3e-25 120.2 74 79.7
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 3.9e-25 118.6 91 67.0
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 8.7e-25 117.5 92 66.3
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 1.9e-24 116.3 66 80.3
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 1.3e-23 113.6 64 89.1
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 2.4e-22 109.4 89 64.0
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 3.1e-22 109.0 107 55.1
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 3.1e-22 109.0 107 55.1
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 3.1e-22 109.0 107 55.1
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 3.1e-22 109.0 107 55.1
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.1e-22 109.0 107 55.1
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 3.1e-22 109.0 107 55.1
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 1.2e-21 107.1 107 54.2
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 2.6e-21 105.9 107 53.3
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 1.3e-20 103.6 109 52.3
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 3.8e-20 102.1 92 57.6
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 8.4e-20 100.9 90 54.4
TWI14G1004 Tripterygium wilfordii HOM05D002578 ORTHO05D005154 1.1e-19 100.5 82 63.4
CsaV3_4G010600 Cucumis sativus L. HOM05D002578 ORTHO05D005154 4.2e-19 98.6 54 90.7
Gohir.D09G093200 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.6e-18 96.7 50 96.0
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 3.5e-18 95.5 91 56.0
Aqoxy5G00925 Aquilegia oxysepala HOM05D002578 ORTHO05D005154 4.6e-18 95.1 65 73.8
Nn1g08404 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.0e-17 94.0 50 94.0
HanXRQChr05g0152541 Helianthus annuus HOM05D002578 ORTHO05D005154 1.3e-17 93.6 50 92.0
HanXRQChr11g0327001 Helianthus annuus HOM05D002578 ORTHO05D005154 1.3e-17 93.6 50 92.0
Gohir.A09G103050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.3e-17 92.8 48 95.8
Migut.D01324 Erythranthe guttata HOM05D002578 ORTHO05D005154 5.1e-17 91.7 50 90.0
Lj2A1234G110 Lonicera japonica HOM05D002578 ORTHO05D005154 6.7e-17 91.3 50 88.0
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 6.7e-17 91.3 90 54.4
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 8.7e-17 90.9 95 52.6
RcHm_v2.0_Chr2g0118541 Rosa chinensis HOM05D002578 ORTHO05D005154 1.5e-16 90.1 50 88.0
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 2.5e-16 89.4 90 54.4
SEGI_32821 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 2.5e-16 89.4 71 64.8
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 4.3e-16 88.6 109 47.7
MD14G1153600 Malus domestica HOM05D002578 ORTHO05D005154 5.7e-16 88.2 50 86.0
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 7.4e-16 87.8 51 86.3
Psat6g181640 Pisum sativum HOM05D002578 ORTHO05D005154 2.2e-15 86.3 50 84.0
Cpa.g.sc301.3 Carica papaya HOM05D002578 ORTHO05D005820 1.2e-13 80.5 42 92.9
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 1.2e-13 80.5 47 80.9
Potri.002G235600 Populus trichocarpa HOM05D002578 ORTHO05D005154 2.6e-13 79.3 49 75.5
Nitab4.5_0005412g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.3e-12 77.0 39 97.4
Zm00001eb435100 Zea mays HOM05D002578 ORTHO05D005154 1.3e-12 77.0 79 51.9
HanXRQChr16g0526141 Helianthus annuus HOM05D002578 ORTHO05D005154 5.0e-12 75.1 46 78.3
CiPaw.10G131300 Carya illinoinensis HOM05D002578 ORTHO05D005154 1.4e-11 73.6 97 46.4
Solyc11g039530.2 Solanum lycopersicum HOM05D002578 ORTHO05D005154 5.5e-11 71.6 53 67.9
Potri.012G047500 Populus trichocarpa HOM05D002578 ORTHO05D005154 4.6e-10 68.6 45 68.9
Sc25g0002540 Simmondsia chinensis HOM05D002578 ORTHO05D001488 1.0e-09 67.4 49 65.3
Eucgr.A01255 Eucalyptus grandis HOM05D002578 ORTHO05D002698 3.3e-08 62.4 53 60.4
HanXRQChr16g0503681 Helianthus annuus HOM05D002578 ORTHO05D005154 4.3e-08 62.0 37 75.7
Lsat_1_v5_gn_5_168100 Lactuca sativa HOM05D002578 ORTHO05D005154 2.2e-07 59.7 35 82.9


User provided reference genes

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