Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 3.4e-147 525.0 269 100.0
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 4.9e-146 521.2 269 98.9
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.5e-144 515.0 271 98.5
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 2.5e-134 482.3 277 91.0
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 1.4e-132 476.5 275 90.2
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 4.9e-130 468.0 277 88.8
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 4.1e-129 464.9 277 88.4
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 4.1e-129 464.9 277 88.4
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 5.0e-127 458.0 277 87.0
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 1.1e-124 450.3 279 84.9
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 3.7e-122 441.8 275 83.6
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 5.2e-116 421.4 275 81.8
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 8.9e-116 420.6 276 81.5
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 3.4e-115 418.7 273 81.3
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 9.9e-115 417.2 276 81.5
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 1.3e-114 416.8 276 83.3
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.2e-114 416.0 263 82.5
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 2.2e-114 416.0 272 81.6
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 3.8e-114 415.2 276 79.0
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 4.9e-114 414.8 277 80.1
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 8.4e-114 414.1 275 82.2
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 1.1e-113 413.7 271 81.2
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 1.9e-113 412.9 274 81.8
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 4.1e-113 411.8 276 79.0
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 7.1e-113 411.0 275 81.8
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 7.1e-113 411.0 270 80.7
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 1.2e-112 410.2 283 78.4
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 2.1e-112 409.5 277 79.1
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 2.7e-112 409.1 276 80.4
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 3.5e-112 408.7 276 78.6
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.0e-111 407.1 278 78.8
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 1.3e-111 406.8 275 78.2
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.3e-111 406.8 276 77.9
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.3e-111 406.8 276 77.9
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 2.3e-111 406.0 274 78.5
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 3.9e-111 405.2 278 80.6
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 3.9e-111 405.2 275 79.6
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 6.6e-111 404.4 274 79.9
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 1.5e-110 403.3 273 79.5
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 1.5e-110 403.3 273 79.5
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 4.3e-110 401.7 275 78.5
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 7.3e-110 401.0 278 77.3
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 1.6e-109 399.8 274 77.7
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.1e-109 399.4 276 77.2
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 4.7e-109 398.3 273 78.0
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 8.1e-109 397.5 271 77.5
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 3.1e-108 395.6 270 79.3
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 4.0e-108 395.2 279 77.1
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 1.5e-107 393.3 268 78.0
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 1.5e-107 393.3 281 75.1
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 2.0e-107 392.9 272 79.4
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 2.0e-107 392.9 281 75.1
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 2.6e-107 392.5 274 78.5
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 2.6e-107 392.5 273 76.9
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 2.6e-107 392.5 271 79.7
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 3.4e-107 392.1 272 79.0
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 3.4e-107 392.1 272 79.0
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 3.4e-107 392.1 272 79.0
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 3.4e-107 392.1 272 79.0
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 3.4e-107 392.1 273 78.0
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 3.4e-107 392.1 275 77.5
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 4.4e-107 391.7 274 78.8
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 9.9e-107 390.6 275 77.5
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 1.3e-106 390.2 272 78.7
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 2.2e-106 389.4 274 78.1
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 2.2e-106 389.4 281 74.4
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 2.9e-106 389.0 280 75.4
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 3.8e-106 388.7 272 77.6
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 4.9e-106 388.3 274 78.5
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 4.9e-106 388.3 274 78.5
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 4.9e-106 388.3 274 78.5
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 4.9e-106 388.3 274 78.5
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 6.4e-106 387.9 273 76.6
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 8.4e-106 387.5 274 77.4
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 1.1e-105 387.1 272 78.3
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 1.4e-105 386.7 272 77.9
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 1.4e-105 386.7 276 75.4
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 2.4e-105 386.0 274 78.1
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 2.4e-105 386.0 274 78.1
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.4e-105 386.0 279 73.8
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 2.4e-105 386.0 270 77.0
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 3.2e-105 385.6 270 77.8
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 5.4e-105 384.8 277 77.3
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 7.1e-105 384.4 271 76.8
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 7.1e-105 384.4 271 76.8
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 9.3e-105 384.0 276 74.3
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 1.6e-104 383.3 275 74.5
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 1.6e-104 383.3 276 76.4
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 2.1e-104 382.9 241 84.2
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 2.1e-104 382.9 275 75.3
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 4.6e-104 381.7 272 75.4
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 6.0e-104 381.3 277 76.9
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 1.3e-103 380.2 278 75.5
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.7e-103 379.8 274 75.9
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 2.3e-103 379.4 275 75.3
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 8.7e-103 377.5 274 76.6
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 4.3e-102 375.2 276 75.7
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 2.8e-101 372.5 276 73.6
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 4.8e-101 371.7 249 79.9
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 6.2e-101 371.3 270 72.6
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 1.4e-100 370.2 234 82.5
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.8e-100 369.8 272 72.1
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 1.8e-100 369.8 212 88.7
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 5.3e-100 368.2 272 73.5
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 6.9e-100 367.9 275 71.3
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 2.0e-99 366.3 277 74.0
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 2.0e-99 366.3 240 80.8
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 1.3e-98 363.6 250 77.2
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.7e-98 363.2 279 70.6
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.7e-98 363.2 273 72.2
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 3.8e-98 362.1 276 72.5
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.4e-97 360.1 199 89.4
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 1.9e-97 359.8 277 73.3
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 3.2e-97 359.0 275 71.3
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 9.3e-97 357.5 271 71.6
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.7e-96 355.9 221 83.3
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 4.5e-91 338.6 194 87.1
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 1.3e-87 327.0 263 67.7
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 7.4e-86 321.2 284 64.4
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 6.2e-85 318.2 199 79.4
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 2.2e-82 309.7 281 60.1
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 5.7e-78 295.0 170 87.1
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.3e-77 293.9 239 69.5
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 5.9e-75 285.0 193 78.2
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 1.4e-68 263.8 198 73.2
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 2.0e-67 260.0 163 83.4
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 9.4e-65 251.1 195 74.4
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 6.1e-64 248.4 134 92.5
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.2e-59 234.2 161 70.8
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 4.4e-54 215.7 165 66.1
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 7.4e-54 214.9 272 52.2
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 3.0e-47 193.0 231 53.2
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.2e-42 176.8 135 68.9
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.6e-40 170.6 151 68.2
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 4.0e-39 166.0 96 82.3
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 4.1e-36 156.0 227 44.9
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 5.4e-36 155.6 227 44.9
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.7e-22 109.0 81 76.5
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 9.8e-22 108.2 112 61.6
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 6.0e-11 72.4 156 34.6
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 1.1e-09 68.2 175 30.9
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 9.5e-09 65.1 71 50.7
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.1e-08 63.9 36 80.6
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 2.3e-07 60.5 60 50.0
Pp3c11_21590 Physcomitrium patens HOM05D041339 ORTHO05D031170 7.5e-06 55.5 99 40.4
Pp3c7_6810 Physcomitrium patens HOM05D041339 ORTHO05D031170 9.9e-06 55.1 99 40.4


User provided reference genes

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