Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1456.4 712 100.0
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1439.5 712 99.2
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1418.7 712 97.6
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1343.2 712 92.0
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1332.0 712 90.0
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1321.6 712 90.0
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1199.9 712 80.9
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1199.1 706 82.3
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1190.6 712 80.2
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1179.1 712 79.4
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1172.9 712 79.8
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1171.8 708 79.8
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1171.8 714 78.9
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1170.6 711 80.5
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1169.1 712 78.9
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1169.1 713 80.4
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1166.4 714 78.9
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1160.2 712 77.7
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 0.0e+00 1152.9 698 79.9
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1151.3 712 78.8
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1145.6 715 78.9
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 0.0e+00 1144.4 715 78.9
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1142.5 712 77.4
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1140.6 708 78.0
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1139.8 702 77.9
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1133.2 717 78.2
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 0.0e+00 1132.9 705 78.0
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 0.0e+00 1132.9 704 77.8
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 0.0e+00 1129.4 702 77.9
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 0.0e+00 1126.3 710 77.0
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 0.0e+00 1125.5 714 76.9
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 0.0e+00 1120.5 707 77.2
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 0.0e+00 1119.4 700 76.4
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 0.0e+00 1118.2 710 77.3
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1117.4 712 75.8
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1117.4 712 76.4
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 0.0e+00 1117.4 715 74.8
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1114.4 708 76.7
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 0.0e+00 1111.3 716 74.4
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 0.0e+00 1110.1 704 76.8
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 0.0e+00 1109.7 716 74.3
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 0.0e+00 1107.8 713 75.3
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 0.0e+00 1107.8 712 74.9
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 0.0e+00 1107.0 710 73.7
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 0.0e+00 1106.3 799 69.8
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 0.0e+00 1106.3 704 76.8
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 0.0e+00 1103.2 704 76.3
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 0.0e+00 1102.8 698 76.4
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 0.0e+00 1101.3 714 74.4
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 0.0e+00 1099.0 707 74.0
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 0.0e+00 1099.0 714 74.8
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 0.0e+00 1097.8 730 73.7
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 0.0e+00 1093.6 718 74.4
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 0.0e+00 1093.2 713 74.2
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 0.0e+00 1086.2 707 74.4
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 0.0e+00 1085.1 748 71.5
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 0.0e+00 1083.6 712 73.3
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 0.0e+00 1079.7 713 73.5
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1075.5 728 73.8
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 2.1e-310 1068.5 711 72.6
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 2.8e-310 1068.1 708 73.0
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 4.1e-309 1064.3 736 70.8
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 6.9e-309 1063.5 705 73.0
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 2.0e-308 1062.0 717 74.1
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 1.2e-305 1052.7 717 73.2
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 7.9e-305 1050.0 698 71.6
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 2.2e-302 1042.0 694 72.0
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 2.2e-302 1042.0 713 70.3
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 2.4e-301 1038.5 706 71.7
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 9.1e-301 1036.6 706 71.5
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 2.0e-300 1035.4 706 71.5
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 3.5e-300 1034.6 707 70.9
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 4.5e-300 1034.2 669 74.3
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 1.1e-298 1029.6 707 71.3
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 1.5e-298 1029.2 705 71.1
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 2.1e-297 1025.4 711 70.2
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 1.4e-296 1022.7 712 70.1
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 8.8e-296 1020.0 712 69.5
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.5e-295 1019.2 691 70.9
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 2.0e-295 1018.8 712 69.1
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 3.3e-295 1018.1 707 71.0
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 3.5e-292 1008.1 703 70.3
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 2.1e-289 998.8 784 63.1
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 3.5e-284 981.5 704 70.6
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 3.8e-283 978.0 710 67.3
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 1.1e-282 976.5 755 64.4
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 2.8e-281 971.8 589 79.6
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 2.2e-278 962.2 695 66.6
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 1.4e-277 959.5 710 66.8
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.2e-276 956.4 717 66.2
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 4.7e-273 944.5 603 75.1
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 7.5e-271 937.2 562 79.5
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 7.0e-269 930.6 713 65.8
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 4.7e-265 917.9 675 66.4
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 1.1e-258 896.7 713 63.8
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 1.6e-257 892.9 542 79.5
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 1.2e-249 866.7 712 60.8
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 1.4e-240 836.6 526 77.4
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 1.0e-214 750.7 694 53.9
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 3.9e-211 738.8 694 54.0
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 1.1e-208 730.7 742 54.6
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 5.5e-189 665.2 703 50.1
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 1.1e-184 651.0 881 43.0
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.2e-183 647.5 446 70.2
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 6.3e-177 625.2 390 77.2
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 1.9e-173 613.6 846 42.3
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 1.7e-166 590.5 686 47.7
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 1.6e-164 583.9 495 57.6
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 9.8e-146 521.5 733 42.6
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 3.5e-143 513.1 731 42.4
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 9.9e-130 468.4 748 38.9
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 5.4e-128 462.6 706 39.0
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 1.0e-126 458.4 811 36.3
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 3.6e-124 449.9 334 69.5
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.3e-118 431.4 303 71.6
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 4.2e-112 409.8 362 58.6
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 3.4e-82 310.5 268 58.6
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 9.4e-80 302.4 201 72.1
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 5.0e-65 253.4 197 64.5
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.8e-60 237.7 164 68.9
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 3.8e-57 227.3 134 82.1
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 2.5e-40 171.4 112 72.3
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 8.9e-38 162.9 102 77.5
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 2.6e-37 161.4 174 56.9
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 7.3e-32 143.3 100 72.0
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 6.2e-31 140.2 117 55.6
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 1.4e-30 139.0 83 72.3
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 2.5e-24 118.2 61 86.9
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 1.1e-22 112.8 149 44.3
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 9.2e-19 99.8 62 71.0
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 5.6e-16 90.5 59 69.5
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 1.3e-12 79.3 45 84.4
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 1.3e-12 79.3 62 59.7
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 3.2e-11 74.7 51 62.7
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 2.3e-09 68.6 47 59.6
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 5.3e-06 57.4 60 53.3


User provided reference genes

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