Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.6e-294 1015.4 528 100.0
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.4e-208 729.9 531 77.0
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.0e-204 716.1 478 82.8
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 2.3e-168 596.3 518 64.7
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 3.6e-161 572.4 526 61.8
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.0e-155 552.7 520 60.6
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 5.0e-155 552.0 530 59.8
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 1.4e-125 454.1 535 51.6
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 1.4e-125 454.1 534 51.7
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 3.5e-124 449.5 544 50.2
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 2.1e-121 440.3 548 48.4
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 2.8e-121 439.9 544 48.3
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 3.6e-121 439.5 351 64.1
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 8.1e-121 438.3 547 48.6
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 5.8e-119 432.2 525 48.4
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 9.9e-119 431.4 530 48.3
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 1.7e-118 430.6 522 49.4
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 4.2e-117 426.0 539 48.1
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 5.4e-117 425.6 555 46.3
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 7.1e-117 425.2 353 62.9
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 3.5e-116 422.9 360 61.7
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 6.0e-116 422.2 538 49.3
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 5.1e-115 419.1 372 59.4
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 3.3e-114 416.4 352 62.8
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 5.6e-114 415.6 521 47.6
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 5.6e-114 415.6 392 59.7
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 2.1e-113 413.7 529 48.2
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 3.7e-113 412.9 539 47.1
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.4e-112 411.0 538 47.0
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 1.8e-112 410.6 544 45.0
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 2.0e-111 407.1 358 60.6
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 9.9e-111 404.8 532 47.9
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 1.3e-110 404.4 522 47.1
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 4.2e-109 399.4 356 61.5
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 7.1e-109 398.7 354 59.6
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 3.5e-108 396.4 388 56.4
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 4.6e-108 396.0 360 57.8
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 6.0e-108 395.6 358 58.9
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 7.9e-108 395.2 375 56.8
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 7.9e-108 395.2 357 59.9
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 1.0e-107 394.8 336 64.6
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 1.3e-107 394.4 356 58.1
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 5.1e-107 392.5 516 47.9
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 5.1e-107 392.5 358 58.7
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 6.7e-107 392.1 351 59.0
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 2.5e-106 390.2 580 44.3
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 2.5e-106 390.2 533 46.5
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 9.6e-106 388.3 353 58.6
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.6e-105 387.5 384 57.6
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.1e-105 387.1 367 55.9
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.8e-105 386.7 360 58.1
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 4.8e-105 386.0 359 57.1
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.8e-104 384.0 350 59.1
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 5.3e-104 382.5 357 57.1
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 5.3e-104 382.5 389 54.8
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 1.2e-103 381.3 514 46.9
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 1.3e-102 377.9 360 56.1
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 1.7e-102 377.5 357 58.3
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 3.8e-102 376.3 357 56.9
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.1e-101 374.8 350 57.1
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.9e-101 374.0 356 57.9
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 1.9e-101 374.0 472 48.3
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 7.1e-101 372.1 351 57.3
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 2.7e-100 370.2 357 55.7
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 5.1e-99 365.9 491 45.4
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 2.5e-98 363.6 427 51.1
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 5.7e-98 362.5 366 55.2
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 7.4e-98 362.1 548 43.6
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.6e-97 360.9 362 53.0
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 4.8e-97 359.4 337 58.2
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 6.3e-97 359.0 352 54.8
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 1.1e-96 358.2 356 54.2
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 1.8e-96 357.5 373 53.6
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 1.8e-96 357.5 356 55.1
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 5.3e-96 355.9 350 55.1
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 1.5e-95 354.4 416 51.7
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 1.7e-94 350.9 354 54.8
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 5.0e-94 349.4 371 53.9
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 5.0e-94 349.4 535 43.4
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 9.4e-93 345.1 365 52.9
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.0e-91 341.7 351 53.8
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 3.0e-91 340.1 402 46.5
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 2.0e-90 337.4 384 52.9
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 1.4e-88 331.3 319 57.1
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.3e-88 329.3 334 54.2
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 9.1e-88 328.6 352 51.7
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 9.4e-85 318.5 448 43.8
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 5.7e-82 309.3 214 73.8
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 7.0e-80 302.4 507 42.8
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 3.6e-76 290.0 268 59.0
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.4e-75 288.1 338 51.2
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 2.3e-75 287.3 356 44.1
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.8e-73 279.6 299 52.8
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 2.0e-71 274.2 187 72.7
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 1.3e-70 271.6 348 44.3
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.9e-70 270.4 305 55.4
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 4.7e-68 263.1 290 50.0
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 1.8e-67 261.2 334 47.9
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.5e-66 258.1 308 47.4
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 2.0e-63 247.7 262 53.4
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.7e-62 244.6 289 49.1
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 1.1e-61 241.9 339 47.8
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 6.1e-60 236.1 183 64.5
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 5.2e-59 233.0 278 48.2
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.7e-57 228.0 261 54.4
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 8.3e-57 225.7 317 43.2
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 8.3e-57 225.7 437 35.7
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.4e-56 224.9 261 53.3
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.8e-56 224.6 278 45.0
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 5.4e-56 223.0 277 45.8
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 2.0e-55 221.1 232 55.2
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 2.7e-55 220.7 278 45.7
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 5.5e-53 213.0 280 44.6
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.6e-52 210.3 258 50.4
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 1.4e-51 208.4 187 58.3
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 8.9e-51 205.7 150 68.7
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-50 204.9 144 68.1
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.4e-50 203.4 309 43.7
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 8.3e-49 199.1 164 61.0
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 4.1e-48 196.8 163 60.1
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 5.4e-48 196.4 163 60.1
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 9.2e-48 195.7 327 40.4
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 7.8e-47 192.6 327 40.1
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 2.9e-46 190.7 333 39.9
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 2.3e-43 181.0 291 37.5
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 5.8e-42 176.4 326 38.0
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 1.9e-40 171.4 164 54.9
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 1.0e-38 165.6 178 48.9
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.7e-38 164.9 177 49.7
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 5.0e-38 163.3 198 50.0
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 8.6e-38 162.5 121 64.5
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.2e-31 142.1 274 38.3
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 1.1e-29 135.6 141 54.6
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 5.6e-29 133.3 252 33.3
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.7e-25 121.7 115 58.3
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 1.1e-24 119.0 367 27.5
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.9e-24 118.2 192 38.0
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 9.2e-24 115.9 108 61.1
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.7e-20 103.6 224 35.3
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 2.0e-18 98.2 70 65.7
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 4.4e-18 97.1 87 52.9
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.4e-16 92.0 155 40.0
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 7.1e-16 89.7 50 74.0
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 9.3e-16 89.4 63 68.3
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 1.6e-15 88.6 156 39.1
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 2.7e-15 87.8 182 31.3
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 3.9e-14 84.0 287 30.0
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 1.6e-12 78.6 135 38.5
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 8.1e-12 76.3 134 38.1
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 2.0e-10 71.6 87 50.6
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.4e-08 64.7 40 75.0
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 3.9e-06 57.4 58 53.4


User provided reference genes

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