Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G017100 Gossypium raimondii HOM05D000216 ORTHO05D003638 1.1e-45 186.4 101 100.0
Gohir.D09G014950 Gossypium hirsutum HOM05D000216 ORTHO05D003638 1.1e-39 166.4 93 95.7
HanXRQChr00c0165g0572141 Helianthus annuus HOM05D000216 ORTHO05D003638 2.3e-32 142.1 91 81.3
HanXRQChr00c0560g0575801 Helianthus annuus HOM05D000216 ORTHO05D003638 2.3e-32 142.1 91 81.3
HanXRQChr00c0601g0576511 Helianthus annuus HOM05D000216 ORTHO05D003638 2.3e-32 142.1 91 81.3
HanXRQChr08g0210201 Helianthus annuus HOM05D000216 ORTHO05D003638 2.3e-32 142.1 91 81.3
HanXRQChr10g0282501 Helianthus annuus HOM05D000216 ORTHO05D003638 2.3e-32 142.1 91 81.3
HanXRQChr11g0326631 Helianthus annuus HOM05D000216 ORTHO05D003638 2.3e-32 142.1 91 81.3
HanXRQChr13g0415501 Helianthus annuus HOM05D000216 ORTHO05D003638 2.3e-32 142.1 91 81.3
HanXRQCPg0579821 Helianthus annuus HOM05D000216 ORTHO05D003638 2.3e-32 142.1 91 81.3
SalBow1G2877 Salvia bowleyana HOM05D000216 ORTHO05D003638 2.3e-32 142.1 91 81.3
ECA054G0005 Erigeron canadensis HOM05D000216 ORTHO05D000634 3.0e-32 141.7 91 81.3
Lsat_1_v5_gn_2_1641 Lactuca sativa HOM05D000216 ORTHO05D003638 3.0e-32 141.7 91 81.3
Lj2C1237G0 Lonicera japonica HOM05D000216 ORTHO05D003638 3.0e-32 141.7 91 81.3
Lj2C1238G11 Lonicera japonica HOM05D000216 ORTHO05D003638 3.0e-32 141.7 91 81.3
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 3.0e-32 141.7 91 81.3
LjContig00489g0001571 Lotus japonicus HOM05D000216 ORTHO05D003638 3.0e-32 141.7 91 81.3
Potri.013G139080 Populus trichocarpa HOM05D000216 ORTHO05D003638 3.0e-32 141.7 91 81.3
Hma1.2p1_0414F.1_g147690 Hydrangea macrophylla HOM05D000216 ORTHO05D003638 3.9e-32 141.4 90 81.1
PGR111G0049 Punica granatum HOM05D000216 ORTHO05D003638 3.9e-32 141.4 91 81.3
ATCG00150 Arabidopsis thaliana HOM05D000216 ORTHO05D003638 5.1e-32 141.0 91 81.3
BNapus_Darmor_BZH_scaffold_253p00040 Brassica napus HOM05D000216 ORTHO05D003638 5.1e-32 141.0 91 81.3
BolSC37t60770H Brassica oleracea HOM05D000216 ORTHO05D003638 5.1e-32 141.0 91 81.3
BolSC45t60878H Brassica oleracea HOM05D000216 ORTHO05D003638 5.1e-32 141.0 91 81.3
BraSC151t45693Z Brassica rapa HOM05D000216 ORTHO05D003638 5.1e-32 141.0 91 81.3
BraSC59t46515Z Brassica rapa HOM05D000216 ORTHO05D003638 5.1e-32 141.0 91 81.3
CARHR281900 Cardamine hirsuta HOM05D000216 ORTHO05D003638 5.1e-32 141.0 91 81.3
Ciclev10013984m.g Citrus clementina HOM05D000216 ORTHO05D003638 5.1e-32 141.0 91 81.3
Ah.10g027620 Amaranthus hybridus HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Ah.10g027780 Amaranthus hybridus HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
arahy.Tifrunner.gnm1.ann1.49E3RC Arachis hypogaea HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
arahy.Tifrunner.gnm1.ann1.77R9Y6 Arachis hypogaea HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
arahy.Tifrunner.gnm1.ann1.KPH33C Arachis hypogaea HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
LjContig00318g0018562 Lotus japonicus HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Lalb_Chr06g0172971 Lupinus albus HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Lalb_Chr09g0335341 Lupinus albus HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Medtr3g029550 Medicago truncatula HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Medtr4g051103 Medicago truncatula HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Phvul.003G256800 Phaseolus vulgaris HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Psat0s2754g0240 Pisum sativum HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Psat0s2961g0080 Pisum sativum HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Psat0s3650g0160 Pisum sativum HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Psat1g003880 Pisum sativum HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Psat6g219400 Pisum sativum HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Psat7g033680 Pisum sativum HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Psat7g038960 Pisum sativum HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
RcHm_v2.0_CPg0502431 Rosa chinensis HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Sed0006587 Sechium edule HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Sed0012920 Sechium edule HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
Sed0015108 Sechium edule HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
unitig_91.g26494 Utricularia gibba HOM05D000216 ORTHO05D003638 1.1e-31 139.8 91 80.2
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.1e-31 139.8 91 80.2
EL10As12g24015 Beta vulgaris HOM05D000216 ORTHO05D003638 1.5e-31 139.4 91 80.2
DCAR_032472 Daucus carota HOM05D000216 ORTHO05D003638 1.5e-31 139.4 91 80.2
PSO548G0039 Papaver somniferum HOM05D000216 ORTHO05D003638 1.5e-31 139.4 91 80.2
Lsat_1_v5_gn_8_19261 Lactuca sativa HOM05D000216 ORTHO05D003638 1.9e-31 139.0 91 80.2
AUR62012105 Chenopodium quinoa HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund03957 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund18044 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund27559 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund27611 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund27653 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund27865 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund27918 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund27995 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund28152 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund28178 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund28276 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund28388 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund28560 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund28651 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund28794 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund29068 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund29351 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund29741 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund29885 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund30206 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund30310 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund30432 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund30437 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund30852 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund31037 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Hund31056 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Zm00001eb435250 Zea mays HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Zm00001eb435460 Zea mays HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Zm00001eb435730 Zea mays HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Zm00001eb436810 Zea mays HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Zm00001eb437240 Zea mays HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Zm00001eb438330 Zea mays HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Zm00001eb441010 Zea mays HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Zm00001eb442740 Zea mays HOM05D000216 ORTHO05D003638 3.3e-31 138.3 91 79.1
Medtr0002s0530 Medicago truncatula HOM05D000216 ORTHO05D003638 4.3e-31 137.9 91 78.0
SEGI_01684 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 4.3e-31 137.9 91 79.1
SEGI_03518 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 4.3e-31 137.9 91 79.1
SEGI_24812 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 4.3e-31 137.9 91 79.1
SEGI_31181 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 4.3e-31 137.9 91 79.1
Gorai.005G105500 Gossypium raimondii HOM05D000216 ORTHO05D003638 5.7e-31 137.5 91 80.2
Solyc00g500335.1 Solanum lycopersicum HOM05D000216 ORTHO05D003638 7.4e-31 137.1 91 79.1
QL93p0837_0003 Quercus lobata HOM05D000216 ORTHO05D003638 2.2e-30 135.6 90 77.8
SGA_v2.0_scaffold95G28823 Striga asiatica HOM05D000216 ORTHO05D003638 2.2e-30 135.6 91 78.0
Lalb_Chr07g0192171 Lupinus albus HOM05D000216 ORTHO05D003638 4.8e-30 134.4 91 78.0
Mapoly0044s0072 Marchantia polymorpha HOM05D000216 ORTHO05D003638 4.8e-30 134.4 91 75.8
CAN.G386.26 Capsicum annuum HOM05D000216 ORTHO05D003638 6.3e-30 134.0 91 78.0
CAN.G63.18 Capsicum annuum HOM05D000216 ORTHO05D003638 8.2e-30 133.7 91 76.9
SEGI_00749 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.4e-29 132.9 91 76.9
CAN.G201.5 Capsicum annuum HOM05D000216 ORTHO05D003638 1.8e-29 132.5 91 76.9
Medtr0140s0070 Medicago truncatula HOM05D000216 ORTHO05D003638 1.8e-29 132.5 91 78.0
Ah.10g028520 Amaranthus hybridus HOM05D000216 ORTHO05D003638 5.3e-29 131.0 91 76.9
Oeu028759.1 Olea europaea HOM05D000216 ORTHO05D003638 6.9e-29 130.6 91 75.8
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 2.0e-28 129.0 84 81.0
Gorai.013G017800 Gossypium raimondii HOM05D000216 ORTHO05D003638 5.9e-28 127.5 96 75.0
Gohir.D02G093150 Gossypium hirsutum HOM05D000216 ORTHO05D003638 7.7e-28 127.1 91 74.7
CDE02G3154 Ceratophyllum demersum HOM05D000216 ORTHO05D003638 2.9e-27 125.2 83 79.5
Hund20346 Selenicereus undatus HOM05D000216 ORTHO05D003638 2.9e-27 125.2 90 73.3
Gorai.006G159100 Gossypium raimondii HOM05D000216 ORTHO05D003638 3.8e-27 124.8 86 76.7
Lalb_Chr06g0173061 Lupinus albus HOM05D000216 ORTHO05D003638 3.8e-27 124.8 91 73.6
CSS0018496 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D003638 1.1e-26 123.2 82 79.3
TPR.G8664 Trifolium pratense HOM05D000216 ORTHO05D003638 1.4e-26 122.9 103 68.9
Psat5g134680 Pisum sativum HOM05D000216 ORTHO05D003638 3.2e-26 121.7 82 78.0
Migut.L00411 Erythranthe guttata HOM05D000216 ORTHO05D003638 5.5e-26 120.9 79 81.0
Sed0025462 Sechium edule HOM05D000216 ORTHO05D003638 7.2e-26 120.6 91 72.5
Nn4g23650 Nelumbo nucifera HOM05D000216 ORTHO05D003638 1.2e-25 119.8 78 80.8
TPR.G8651 Trifolium pratense HOM05D000216 ORTHO05D003638 1.6e-25 119.4 103 66.0
CAN.G229.14 Capsicum annuum HOM05D000216 ORTHO05D003638 4.6e-25 117.9 81 77.8
CAN.G517.19 Capsicum annuum HOM05D000216 ORTHO05D003638 1.5e-23 112.8 74 81.1
Medtr6g025470 Medicago truncatula HOM05D000216 ORTHO05D003638 7.4e-23 110.5 91 65.9
Psat0s2288g0040 Pisum sativum HOM05D000216 ORTHO05D003638 1.3e-22 109.8 74 79.7
Gorai.005G029600 Gossypium raimondii HOM05D000216 ORTHO05D003638 1.7e-22 109.4 77 77.9
Medtr6g025340 Medicago truncatula HOM05D000216 ORTHO05D003638 1.7e-22 109.4 88 67.0
Gohir.D02G023550 Gossypium hirsutum HOM05D000216 ORTHO05D003638 2.8e-22 108.6 77 77.9
Migut.D01339 Erythranthe guttata HOM05D000216 ORTHO05D003638 1.1e-21 106.7 70 80.0
Medtr5g022790 Medicago truncatula HOM05D001076 ORTHO05D001603 1.5e-20 102.8 71 77.5
arahy.Tifrunner.gnm1.ann1.3KQL5I Arachis hypogaea HOM05D000216 ORTHO05D003518 7.7e-20 100.5 67 79.1
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 1.7e-19 99.4 66 78.8
arahy.Tifrunner.gnm1.ann1.M78D68 Arachis hypogaea HOM05D000216 ORTHO05D003638 2.7e-17 92.0 86 62.8
Hund01856 Selenicereus undatus HOM05D000216 ORTHO05D003638 4.7e-17 91.3 81 63.0
Hund30593 Selenicereus undatus HOM05D000216 ORTHO05D003638 2.0e-15 85.9 90 57.8
Hund01860 Selenicereus undatus HOM05D000216 ORTHO05D003638 2.6e-15 85.5 75 65.3
SMO086G0032 Selaginella moellendorffii HOM05D000216 ORTHO05D003638 1.3e-14 83.2 89 53.9
Gohir.D04G020733 Gossypium hirsutum HOM05D000216 ORTHO05D003638 1.7e-14 82.8 72 63.9
Lsat_1_v5_gn_3_17360 Lactuca sativa HOM05D000216 ORTHO05D003638 4.8e-14 81.3 52 82.7
Phvul.001G151500 Phaseolus vulgaris HOM05D000216 ORTHO05D003638 6.3e-14 80.9 61 72.1
Psat2g044440 Pisum sativum HOM05D000216 ORTHO05D003518 3.1e-13 78.6 57 73.7
Migut.C00051 Erythranthe guttata HOM05D000216 ORTHO05D003638 9.1e-13 77.0 49 77.6
HanXRQChr13g0425721 Helianthus annuus HOM05D000216 ORTHO05D003638 1.2e-12 76.6 45 80.0
HanXRQChr13g0425811 Helianthus annuus HOM05D000216 ORTHO05D003638 1.2e-12 76.6 45 80.0
Oeu045559.1 Olea europaea HOM05D000216 ORTHO05D003518 2.0e-12 75.9 56 76.8
SEGI_26801 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.5e-12 75.1 44 79.5
Medtr7g116680 Medicago truncatula HOM05D000216 ORTHO05D003638 5.9e-12 74.3 91 50.5
Hund15942 Selenicereus undatus HOM05D000216 ORTHO05D003638 5.9e-12 74.3 54 75.9
Gorai.012G024800 Gossypium raimondii HOM05D000216 ORTHO05D003638 2.2e-11 72.4 72 55.6
Sed0022034 Sechium edule HOM05D000216 ORTHO05D003638 5.5e-10 67.8 45 73.3
PGSC0003DMG403017663 Solanum tuberosum HOM05D000216 ORTHO05D003518 7.2e-10 67.4 52 73.1
arahy.Tifrunner.gnm1.ann1.TG7LSU Arachis hypogaea HOM05D000216 ORTHO05D003638 1.6e-09 66.2 40 75.0
Nitab4.5_0001140g0200 Nicotiana tabacum HOM05D000216 ORTHO05D003638 1.6e-09 66.2 59 61.0
Nitab4.5_0000559g0180 Nicotiana tabacum HOM05D000216 ORTHO05D028337 2.7e-09 65.5 90 47.8
Solyc00g500051.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 4.7e-09 64.7 42 81.0
Solyc00g500134.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 4.7e-09 64.7 42 81.0
Solyc00g500204.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 4.7e-09 64.7 42 81.0
Solyc00g500291.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 4.7e-09 64.7 42 81.0
Solyc00g500320.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 4.7e-09 64.7 42 81.0
Eucgr.G00227 Eucalyptus grandis HOM05D000216 ORTHO05D003638 2.3e-08 62.4 55 65.5
Nitab4.5_0001639g0020 Nicotiana tabacum HOM05D000216 ORTHO05D003638 5.2e-08 61.2 41 75.6
Oeu022568.1 Olea europaea HOM05D000216 ORTHO05D003638 6.7e-08 60.8 34 82.4
Nitab4.5_0002175g0020 Nicotiana tabacum HOM05D000216 ORTHO05D003638 8.8e-08 60.5 41 70.7
Potri.019G028601 Populus trichocarpa HOM05D000216 ORTHO05D003638 3.3e-07 58.5 38 76.3
Solyc08g028875.1 Solanum lycopersicum HOM05D000216 ORTHO05D003638 3.3e-07 58.5 41 75.6
CAN.G993.7 Capsicum annuum HOM05D000216 ORTHO05D003638 7.5e-07 57.4 31 83.9
HanXRQChr12g0380621 Helianthus annuus HOM05D000216 ORTHO05D003638 9.7e-07 57.0 31 83.9
Glyma.19G054201 Glycine max HOM05D000216 ORTHO05D003638 1.7e-06 56.2 32 87.5
MD16G1100100 Malus domestica HOM05D000216 ORTHO05D003638 1.7e-06 56.2 31 83.9
MD16G1263300 Malus domestica HOM05D000216 ORTHO05D003638 2.8e-06 55.5 32 81.2
Oeu024824.1 Olea europaea HOM05D000216 ORTHO05D003518 3.7e-06 55.1 41 70.7
CAN.G1185.18 Capsicum annuum HOM05D000216 ORTHO05D003638 6.3e-06 54.3 32 75.0


User provided reference genes

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