Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 0.0e+00 1213.4 607 100.0
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 0.0e+00 1204.1 607 99.3
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 0.0e+00 1193.7 607 98.4
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 0.0e+00 1139.0 607 92.8
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 0.0e+00 1131.7 607 91.9
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 0.0e+00 1127.9 608 92.1
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 0.0e+00 1127.1 607 91.8
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 0.0e+00 1115.1 607 90.9
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.7e-300 1035.4 609 84.6
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 8.6e-300 1033.1 614 84.0
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 3.4e-296 1021.1 612 83.0
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.4e-296 1020.8 555 91.0
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 5.7e-296 1020.4 597 85.1
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 9.8e-296 1019.6 614 82.7
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 3.7e-295 1017.7 615 82.1
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 8.3e-295 1016.5 579 85.8
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 8.3e-295 1016.5 617 82.2
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 2.4e-294 1015.0 607 83.2
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.2e-294 1014.6 616 82.5
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 1.6e-293 1012.3 615 82.3
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 6.0e-293 1010.4 617 81.8
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 6.0e-293 1010.4 584 84.6
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 7.8e-293 1010.0 607 82.4
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.0e-292 1009.6 607 82.4
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 1.3e-292 1009.2 574 86.2
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.7e-292 1008.8 576 85.2
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 1.7e-292 1008.8 616 81.0
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 1.7e-292 1008.8 607 81.5
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 2.3e-292 1008.4 577 84.1
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 2.3e-292 1008.4 581 85.0
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 3.9e-292 1007.7 582 85.2
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 5.0e-292 1007.3 558 87.8
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 8.6e-292 1006.5 575 85.2
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 8.6e-292 1006.5 615 81.6
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.1e-291 1006.1 623 80.4
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.9e-291 1005.4 618 81.4
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 2.5e-291 1005.0 618 81.2
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 2.5e-291 1005.0 606 82.2
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.5e-291 1005.0 619 81.6
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 616 79.7
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 4.3e-291 1004.2 616 79.7
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 4.3e-291 1004.2 608 81.7
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 5.6e-291 1003.8 621 80.2
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 7.3e-291 1003.4 581 84.7
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 1.2e-290 1002.7 621 80.0
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.2e-290 1002.7 569 85.8
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 619 81.4
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 2.1e-290 1001.9 611 81.7
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 2.8e-290 1001.5 617 80.1
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 3.6e-290 1001.1 610 81.1
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 3.6e-290 1001.1 610 81.1
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 3.6e-290 1001.1 623 80.9
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 4.7e-290 1000.7 607 81.7
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 1.1e-289 999.6 618 80.6
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 1.8e-289 998.8 612 80.9
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 1.8e-289 998.8 612 80.9
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 1.8e-289 998.8 618 81.1
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 3.1e-289 998.0 561 86.3
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 4.0e-289 997.7 607 81.1
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 5.2e-289 997.3 614 81.4
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 5.2e-289 997.3 590 83.1
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 1.2e-288 996.1 613 81.1
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 1.5e-288 995.7 607 81.1
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 1.5e-288 995.7 558 86.6
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 2.0e-288 995.3 612 80.7
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 2.0e-288 995.3 612 80.7
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 3.4e-288 994.6 613 81.4
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 3.4e-288 994.6 607 81.1
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 3.4e-288 994.6 607 81.1
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 3.4e-288 994.6 614 80.6
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 4.4e-288 994.2 611 81.8
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 4.4e-288 994.2 595 81.7
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 5.8e-288 993.8 614 81.1
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 9.8e-288 993.0 621 79.4
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.3e-287 992.6 616 80.5
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 1.7e-287 992.3 607 80.7
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 2.2e-287 991.9 611 81.0
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 2.2e-287 991.9 611 80.9
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 2.9e-287 991.5 600 81.7
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 6.4e-287 990.3 590 83.4
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 6.4e-287 990.3 610 80.3
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 1.9e-286 988.8 617 80.4
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 5.4e-286 987.3 607 81.5
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 7.0e-286 986.9 601 81.2
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 9.2e-286 986.5 618 80.4
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 1.6e-285 985.7 611 80.4
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 2.7e-285 984.9 615 79.8
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 3.5e-285 984.6 626 78.9
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 4.6e-285 984.2 610 81.5
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 7.8e-285 983.4 579 82.9
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.7e-284 982.2 579 82.9
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.3e-284 981.9 570 83.5
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.3e-284 981.9 613 79.4
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 3.0e-284 981.5 607 80.6
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 3.9e-284 981.1 631 77.8
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 3.9e-284 981.1 603 80.9
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 1.9e-283 978.8 571 83.4
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 4.3e-283 977.6 576 82.1
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.2e-282 976.1 595 81.3
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 6.2e-282 973.8 629 77.4
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.6e-280 968.4 616 78.2
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.2e-279 965.3 615 78.5
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 1.9e-278 962.2 644 74.8
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 4.1e-278 961.1 582 81.6
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.7e-277 958.4 611 80.4
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 4.6e-277 957.6 640 75.8
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 2.3e-276 955.3 586 81.2
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 3.9e-276 954.5 527 86.7
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.6e-274 949.1 574 79.8
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.4e-273 946.0 568 82.2
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.2e-271 938.7 583 78.9
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 4.9e-271 937.6 585 77.6
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.1e-270 936.4 684 70.9
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 3.9e-268 927.9 577 76.8
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 6.6e-268 927.2 602 76.2
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 3.2e-262 908.3 558 81.0
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 2.3e-260 902.1 596 74.3
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.3e-260 902.1 618 73.1
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 9.0e-257 890.2 539 80.9
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 5.8e-256 887.5 575 77.9
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 6.0e-253 877.5 624 71.8
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.0e-252 876.7 527 80.1
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 5.8e-248 860.9 622 72.3
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 1.8e-241 839.3 606 68.3
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 2.1e-237 825.9 557 70.7
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.5e-230 802.4 426 92.3
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 3.6e-229 798.5 490 80.8
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 2.4e-225 785.8 490 80.0
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 7.2e-222 774.2 545 68.1
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 9.4e-222 773.9 497 76.7
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 4.4e-219 765.0 481 80.7
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.4e-217 759.2 433 85.7
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.7e-210 736.5 490 75.5
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 5.3e-209 731.5 433 81.1
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.2e-205 720.3 577 61.5
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 8.0e-205 717.6 422 82.0
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.2e-189 667.2 403 82.1
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 2.7e-176 622.9 433 73.4
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.6e-168 597.0 601 51.9
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.3e-159 567.4 312 88.5
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 3.3e-150 536.2 384 73.4
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 3.0e-127 459.9 339 72.0
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 7.9e-120 435.3 287 77.4
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 1.9e-105 387.5 277 68.2
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 5.9e-91 339.3 216 76.9
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 2.2e-77 294.3 559 34.5
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 2.3e-74 284.3 149 88.6
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.6e-72 278.1 182 74.7
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.0e-67 261.2 150 82.7
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 1.6e-64 251.5 133 88.0
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 4.6e-59 233.4 131 84.0
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 5.6e-57 226.5 127 85.0
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 1.2e-56 225.3 117 97.4
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 3.4e-54 217.2 143 75.5
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 2.3e-50 204.5 178 62.4
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 6.6e-50 203.0 114 83.3
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.3e-49 200.7 105 89.5
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 7.3e-49 199.5 109 89.0
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.8e-47 194.9 115 80.0
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 4.1e-44 183.7 115 74.8
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 4.3e-41 173.7 251 46.2
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 5.2e-39 166.8 214 49.1
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 1.7e-37 161.8 96 77.1
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 7.1e-36 156.4 128 67.2
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 1.7e-26 125.2 61 96.7
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 6.6e-26 123.2 116 59.5
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 3.4e-22 110.9 70 71.4
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 6.4e-21 106.7 56 92.9
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 9.3e-20 102.8 212 34.0
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.9e-17 95.1 71 66.2
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 2.6e-14 84.7 179 27.9
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 6.5e-13 80.1 67 53.7
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 4.2e-12 77.4 85 56.5
SMO199G0036 Selaginella moellendorffii HOM05D018282 ORTHO05D378716 1.0e-05 56.2 55 58.2


User provided reference genes

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