Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.5e-113 412.9 218 100.0
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.4e-113 411.4 218 99.5
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 5.7e-113 411.0 218 99.5
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 4.5e-110 401.4 218 96.3
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.9e-109 398.7 218 95.4
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.8e-106 389.4 211 93.8
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 4.0e-106 388.3 218 93.6
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 1.2e-105 386.7 218 92.2
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 2.0e-105 386.0 218 92.7
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 1.7e-104 382.9 218 90.8
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 1.8e-103 379.4 217 89.4
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.2e-103 378.6 209 94.7
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 7.0e-103 377.5 218 89.4
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 9.2e-103 377.1 218 89.9
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 2.0e-102 375.9 218 86.2
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 3.5e-102 375.2 218 88.5
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 3.5e-102 375.2 218 88.5
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 3.5e-102 375.2 218 88.5
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 3.5e-102 375.2 218 88.5
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 4.6e-102 374.8 218 87.2
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 5.9e-102 374.4 218 85.8
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 1.3e-101 373.2 218 88.1
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 1.7e-101 372.9 218 86.2
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 3.0e-101 372.1 218 88.1
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 3.9e-101 371.7 217 88.0
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 3.9e-101 371.7 218 88.1
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 5.0e-101 371.3 218 86.2
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 6.6e-101 370.9 218 85.3
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 8.6e-101 370.5 220 89.1
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 1.1e-100 370.2 217 88.0
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 1.9e-100 369.4 218 84.9
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 2.5e-100 369.0 215 85.6
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 3.3e-100 368.6 218 86.2
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 5.6e-100 367.9 218 86.2
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 5.6e-100 367.9 218 84.9
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 7.3e-100 367.5 216 84.7
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.2e-99 366.7 218 86.2
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 1.2e-99 366.7 218 84.4
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 2.1e-99 365.9 218 85.3
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 2.1e-99 365.9 218 84.9
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 3.6e-99 365.2 218 86.2
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 3.6e-99 365.2 218 86.7
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 3.6e-99 365.2 218 83.0
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 3.6e-99 365.2 218 83.5
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 4.7e-99 364.8 218 83.0
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 4.7e-99 364.8 218 83.0
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 6.2e-99 364.4 218 83.0
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 1.0e-98 363.6 218 83.5
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.0e-98 363.6 217 82.9
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 1.8e-98 362.8 218 84.9
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 1.8e-98 362.8 218 82.6
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 1.8e-98 362.8 218 84.9
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 5.2e-98 361.3 218 84.9
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 6.8e-98 360.9 218 83.9
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 6.8e-98 360.9 218 85.3
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 8.9e-98 360.5 218 85.3
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 1.2e-97 360.1 215 83.3
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 1.2e-97 360.1 218 82.6
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 2.0e-97 359.4 211 86.3
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 2.0e-97 359.4 215 83.7
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 2.0e-97 359.4 215 83.7
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 4.4e-97 358.2 215 83.3
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 9.8e-97 357.1 207 88.9
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 1.7e-96 356.3 218 87.2
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 2.2e-96 355.9 218 83.0
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 6.4e-96 354.4 218 82.6
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 6.4e-96 354.4 211 82.9
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 1.1e-95 353.6 217 82.5
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 2.4e-95 352.4 223 79.8
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 3.2e-95 352.1 217 82.0
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 5.4e-95 351.3 218 82.1
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 1.6e-94 349.7 207 84.1
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.7e-94 349.0 214 81.3
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.7e-93 346.3 218 78.9
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 3.9e-93 345.1 221 81.9
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 5.0e-93 344.7 219 82.2
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 5.0e-93 344.7 219 82.2
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 6.6e-93 344.4 219 82.2
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 6.6e-93 344.4 219 82.2
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 8.6e-93 344.0 219 82.2
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 1.1e-92 343.6 207 83.6
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 1.9e-92 342.8 220 80.0
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 4.3e-92 341.7 206 83.5
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 5.6e-92 341.3 219 81.7
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 7.3e-92 340.9 294 64.6
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 7.3e-92 340.9 218 77.5
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 1.2e-91 340.1 207 83.1
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.6e-91 339.7 202 83.2
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.1e-91 339.3 202 83.2
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 6.2e-91 337.8 221 78.3
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 8.1e-91 337.4 218 77.1
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.4e-90 336.7 206 83.5
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 5.2e-90 334.7 211 82.9
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 1.2e-89 333.6 218 76.6
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 2.9e-88 328.9 215 78.6
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 2.4e-87 325.9 196 83.7
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 3.2e-87 325.5 218 76.6
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 3.2e-87 325.5 215 76.3
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 5.4e-87 324.7 218 73.9
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 9.2e-87 323.9 215 75.8
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 1.6e-86 323.2 201 78.1
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 4.6e-86 321.6 218 75.7
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 6.0e-86 321.2 277 62.8
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 6.0e-86 321.2 215 75.3
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 1.0e-85 320.5 211 73.5
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 2.1e-83 312.8 215 75.3
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 4.6e-78 295.0 185 80.5
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 7.8e-78 294.3 185 81.6
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 3.9e-77 292.0 201 74.6
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 2.5e-76 289.3 164 86.0
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 3.6e-75 285.4 174 81.6
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 3.6e-75 285.4 173 82.7
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 1.0e-69 267.3 219 59.4
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 1.7e-69 266.5 210 63.3
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.8e-66 256.5 210 60.0
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 1.5e-65 253.4 220 67.7
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 5.1e-61 238.4 139 84.9
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.6e-59 232.3 145 81.4
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 4.8e-59 231.9 210 56.7
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 2.6e-57 226.1 212 59.0
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 9.9e-57 224.2 145 80.0
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 1.0e-53 214.2 176 65.9
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 5.6e-52 208.4 148 76.4
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 1.0e-48 197.6 215 53.0
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 7.1e-47 191.4 119 80.7
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 7.1e-47 191.4 110 83.6
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 6.3e-43 178.3 174 55.7
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.8e-42 176.8 162 54.9
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 6.1e-38 161.8 215 47.9
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 2.2e-32 143.3 91 81.3
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 1.4e-31 140.6 84 85.7
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 6.9e-26 121.7 95 73.7
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 3.8e-16 89.4 56 71.4
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 6.5e-16 88.6 45 93.3
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.9e-15 87.0 46 84.8
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 1.6e-14 84.0 53 71.7
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 2.7e-14 83.2 216 35.6
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 3.0e-13 79.7 66 63.6
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 1.1e-07 61.2 34 88.2
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 3.2e-07 59.7 34 88.2
Lj4A782T80 Lonicera japonica HOM05D005338 ORTHO05D234559 3.6e-06 56.2 34 97.1


User provided reference genes

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