Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.2e-113 411.4 207 100.0
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.2e-91 340.1 173 97.7
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.9e-91 337.8 173 97.1
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 5.1e-87 324.7 173 90.2
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 5.1e-87 324.7 173 90.2
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 5.1e-87 324.7 173 90.2
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 5.1e-87 324.7 173 90.2
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 5.1e-87 324.7 173 90.2
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 5.1e-87 324.7 173 90.2
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 5.1e-87 324.7 173 90.2
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 5.1e-87 324.7 173 90.2
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 5.1e-87 324.7 173 90.2
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 4.3e-86 321.6 173 90.2
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 7.4e-86 320.9 173 89.6
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 1.3e-85 320.1 174 89.7
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 3.7e-85 318.5 173 91.3
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 3.7e-85 318.5 173 91.3
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 3.7e-85 318.5 173 91.3
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 3.7e-85 318.5 173 91.3
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 9.1e-84 313.9 173 91.9
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.2e-83 313.5 173 91.9
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 3.8e-82 308.5 173 87.3
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 6.5e-82 307.8 173 87.3
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 1.1e-81 307.0 173 86.1
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.1e-81 307.0 173 86.1
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.1e-81 307.0 173 86.1
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 1.9e-81 306.2 173 86.7
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 2.5e-81 305.8 173 86.1
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 9.4e-81 303.9 173 85.5
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 6.1e-80 301.2 173 86.1
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 6.1e-80 301.2 173 85.5
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 6.7e-79 297.7 173 83.8
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 8.8e-79 297.4 173 83.8
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 2.6e-78 295.8 173 82.7
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 2.0e-75 286.2 173 79.8
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 2.6e-75 285.8 173 80.3
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 3.4e-75 285.4 162 85.8
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 1.0e-74 283.9 173 79.8
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 1.0e-74 283.9 173 79.8
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 1.0e-74 283.9 173 79.8
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 2.5e-73 279.3 164 82.3
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 4.2e-73 278.5 173 80.3
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 6.1e-72 274.6 162 83.3
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 6.1e-72 274.6 162 83.3
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 6.1e-72 274.6 162 83.3
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 6.1e-72 274.6 162 83.3
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 6.1e-72 274.6 162 83.3
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 6.1e-72 274.6 162 83.3
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 1.4e-71 273.5 162 82.7
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 3.9e-71 271.9 162 82.7
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 3.9e-71 271.9 162 81.5
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.1e-70 270.4 162 82.1
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 2.6e-70 269.2 173 75.7
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 5.3e-68 261.5 178 73.6
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 1.6e-67 260.0 173 77.5
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 7.7e-67 257.7 162 79.6
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 2.1e-64 249.6 173 71.1
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 8.0e-64 247.7 168 74.4
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.3e-61 240.4 173 70.5
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 3.7e-61 238.8 178 69.7
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 2.0e-59 233.0 150 80.0
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.3e-58 230.3 173 69.9
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.7e-58 229.9 122 95.9
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 2.2e-58 229.6 122 95.9
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 5.0e-58 228.4 181 64.6
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 5.0e-58 228.4 181 64.6
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 5.0e-58 228.4 181 64.6
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 8.5e-58 227.6 173 69.9
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 1.5e-57 226.9 173 67.1
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.9e-57 226.5 122 94.3
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 4.2e-57 225.3 178 65.2
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 4.2e-57 225.3 178 65.2
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 4.2e-57 225.3 178 65.2
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 4.2e-57 225.3 178 65.2
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 4.2e-57 225.3 178 65.2
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.2e-56 223.8 178 66.9
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 4.7e-56 221.9 163 69.9
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-54 217.2 134 77.6
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 3.4e-54 215.7 140 77.1
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 2.2e-53 213.0 173 66.5
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 3.7e-53 212.2 130 80.0
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 3.7e-53 212.2 196 55.6
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 1.1e-52 210.7 173 63.0
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 5.4e-52 208.4 117 88.0
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 7.0e-52 208.0 121 86.8
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 1.6e-51 206.8 180 60.0
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 2.0e-51 206.5 141 72.3
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 5.9e-51 204.9 117 86.3
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.2e-49 198.0 121 82.6
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.2e-48 197.2 122 80.3
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 6.1e-48 194.9 109 89.0
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 1.4e-47 193.7 173 62.4
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 2.2e-45 186.4 122 75.4
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 1.1e-44 184.1 149 63.1
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.8e-44 183.3 96 93.8
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 4.7e-40 168.7 106 81.1
Zm00001eb435100 Zea mays HOM05D002578 ORTHO05D005154 1.4e-39 167.2 137 62.0
HanXRQChr16g0526141 Helianthus annuus HOM05D002578 ORTHO05D005154 1.8e-39 166.8 96 82.3
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 9.8e-38 161.0 98 80.6
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 2.9e-37 159.5 96 81.2
Potri.012G047500 Populus trichocarpa HOM05D002578 ORTHO05D005154 3.2e-36 156.0 95 75.8
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 4.1e-36 155.6 109 73.4
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 5.0e-34 148.7 145 56.6
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 3.3e-33 146.0 142 55.6
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 9.5e-33 144.4 82 87.8
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 1.1e-31 141.0 179 42.5
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.2e-30 137.5 77 87.0
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.5e-30 137.1 72 93.1
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 3.4e-30 136.0 95 69.5
Migut.D01327 Erythranthe guttata HOM05D002578 ORTHO05D005154 7.5e-30 134.8 73 87.7
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 1.7e-29 133.7 77 83.1
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.2e-29 133.3 96 72.9
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 3.7e-29 132.5 77 84.4
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 3.7e-29 132.5 96 69.8
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 7.0e-28 128.3 96 66.7
CAN.G134.2 Capsicum annuum HOM05D002578 ORTHO05D005154 9.2e-28 127.9 68 86.8
Aqoxy5G00925 Aquilegia oxysepala HOM05D002578 ORTHO05D005154 7.8e-27 124.8 84 75.0
PGSC0003DMG400003499 Solanum tuberosum HOM05D002578 ORTHO05D005154 2.5e-25 119.8 60 90.0
Gorai.001G190500 Gossypium raimondii HOM05D002578 ORTHO05D002698 7.3e-25 118.2 62 93.5
Lalb_Chr25g0282891 Lupinus albus HOM05D002578 ORTHO05D005154 4.7e-24 115.5 67 79.1
CAN.G1078.3 Capsicum annuum HOM05D002578 ORTHO05D005154 6.2e-24 115.2 67 80.6
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 8.1e-24 114.8 66 78.8
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 1.4e-23 114.0 77 74.0
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 1.4e-23 114.0 77 74.0
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 1.4e-23 114.0 77 74.0
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 6.8e-23 111.7 77 74.0
Lsat_1_v5_gn_5_168100 Lactuca sativa HOM05D002578 ORTHO05D005154 2.6e-22 109.8 85 65.9
Solyc12g035880.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 3.4e-22 109.4 72 72.2
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 4.4e-22 109.0 63 84.1
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 4.9e-21 105.5 77 71.4
HanXRQChr16g0503681 Helianthus annuus HOM05D002578 ORTHO05D005154 1.1e-20 104.4 89 59.6
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.2e-19 100.9 105 53.3
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 2.1e-19 100.1 63 81.0
BraSC58t46504Z Brassica rapa HOM05D002578 ORTHO05D005154 6.6e-18 95.1 49 85.7
HanXRQChr11g0321141 Helianthus annuus HOM05D002578 ORTHO05D002698 5.6e-17 92.0 48 85.4
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 1.6e-16 90.5 88 48.9
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 3.6e-16 89.4 74 62.2
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 6.8e-15 85.1 53 77.4
Lalb_Chr23g0274271 Lupinus albus HOM05D002578 ORTHO05D005154 5.8e-14 82.0 49 77.6
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 9.9e-14 81.3 83 51.8
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 9.9e-14 81.3 83 51.8
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 9.9e-14 81.3 83 51.8
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 9.9e-14 81.3 83 51.8
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 9.9e-14 81.3 83 51.8
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 9.9e-14 81.3 83 51.8
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 9.9e-14 81.3 83 51.8
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 9.9e-14 81.3 83 51.8
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 9.9e-14 81.3 83 51.8
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 1.7e-13 80.5 47 80.9
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.7e-13 80.5 68 63.2
Cpa.g.sc301.3 Carica papaya HOM05D002578 ORTHO05D005820 2.2e-13 80.1 42 90.5
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 2.9e-13 79.7 83 51.8
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 2.9e-13 79.7 83 50.6
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 3.8e-13 79.3 83 50.6
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 4.9e-13 79.0 85 49.4
arahy.Tifrunner.gnm1.ann1.HB4K1E Arachis hypogaea HOM05D002578 ORTHO05D005154 1.2e-11 74.3 38 89.5
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 1.2e-11 74.3 68 54.4
Solyc11g039530.2 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.3e-10 70.1 52 67.3
Oeu012815.1 Olea europaea HOM05D002578 ORTHO05D290875 8.7e-10 68.2 64 59.4
Sc25g0002540 Simmondsia chinensis HOM05D002578 ORTHO05D001488 4.3e-09 65.9 49 63.3
TWI14G1004 Tripterygium wilfordii HOM05D002578 ORTHO05D005154 1.2e-08 64.3 61 54.1
Nn4g25226 Nelumbo nucifera HOM05D002578 ORTHO05D005154 4.7e-08 62.4 27 96.3
Nn7g37550 Nelumbo nucifera HOM05D002578 ORTHO05D005154 4.7e-08 62.4 27 96.3
SEGI_32821 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 1.1e-07 61.2 47 63.8
CsaV3_4G010600 Cucumis sativus L. HOM05D002578 ORTHO05D005154 5.3e-07 58.9 33 84.8
Hund08116 Selenicereus undatus HOM05D002578 ORTHO05D005154 3.4e-06 56.2 38 68.4


User provided reference genes

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