Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.7e-94 349.4 181 100.0
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.3e-65 251.1 137 94.2
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 6.3e-65 251.1 137 94.2
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.4e-64 250.0 137 93.4
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.3e-64 248.1 136 94.1
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.2e-63 246.9 137 92.7
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 3.5e-63 245.4 137 91.2
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.0e-62 241.5 137 90.5
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 8.5e-62 240.7 137 91.2
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 8.5e-62 240.7 137 89.8
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.2e-58 230.3 135 85.9
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 6.3e-57 224.6 137 83.9
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 1.1e-56 223.8 137 82.5
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 9.1e-56 220.7 135 83.7
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 2.7e-55 219.2 137 81.8
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.5e-55 218.8 135 83.7
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 1.0e-54 217.2 135 83.0
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 2.9e-54 215.7 135 80.0
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 5.0e-54 214.9 135 80.0
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 5.0e-54 214.9 135 80.0
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 5.0e-54 214.9 135 81.5
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 6.5e-54 214.5 135 81.5
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 6.5e-54 214.5 135 79.3
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 6.5e-54 214.5 136 82.4
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 8.5e-54 214.2 137 79.6
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 1.1e-53 213.8 139 79.9
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.5e-53 213.4 136 80.1
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.5e-53 212.6 135 78.5
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 3.2e-53 212.2 135 80.0
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 5.5e-53 211.5 135 78.5
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 9.4e-53 210.7 135 79.3
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 9.4e-53 210.7 135 77.8
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 9.4e-53 210.7 135 77.8
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 9.4e-53 210.7 137 78.1
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.2e-52 210.3 136 78.7
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.2e-52 210.3 135 79.3
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 1.2e-52 210.3 132 80.3
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 1.6e-52 209.9 137 78.1
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 2.1e-52 209.5 137 80.3
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 2.7e-52 209.1 135 77.8
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 2.7e-52 209.1 137 80.3
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 3.6e-52 208.8 135 78.5
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 3.6e-52 208.8 137 77.4
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 4.7e-52 208.4 143 76.9
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 4.7e-52 208.4 135 79.3
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 4.7e-52 208.4 132 80.3
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 6.1e-52 208.0 135 78.5
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 6.1e-52 208.0 135 78.5
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 8.0e-52 207.6 135 78.5
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 8.0e-52 207.6 135 78.5
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 8.0e-52 207.6 135 78.5
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 8.0e-52 207.6 135 78.5
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 8.0e-52 207.6 136 79.4
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 8.0e-52 207.6 137 77.4
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 8.0e-52 207.6 137 77.4
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 1.0e-51 207.2 137 78.8
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.0e-51 207.2 143 78.3
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 1.0e-51 207.2 135 76.3
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 1.4e-51 206.8 135 77.8
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 1.4e-51 206.8 143 76.9
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 1.4e-51 206.8 133 78.9
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 1.4e-51 206.8 135 78.5
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 1.4e-51 206.8 135 79.3
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.4e-51 206.8 135 79.3
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 1.8e-51 206.5 140 80.0
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.8e-51 206.5 135 78.5
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 2.3e-51 206.1 135 78.5
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 3.0e-51 205.7 143 76.9
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 3.0e-51 205.7 143 76.9
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 3.0e-51 205.7 143 76.9
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 5.2e-51 204.9 137 77.4
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 5.2e-51 204.9 137 76.6
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 6.8e-51 204.5 136 76.5
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 6.8e-51 204.5 137 75.9
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 6.8e-51 204.5 135 77.0
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 8.8e-51 204.1 143 76.9
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 8.8e-51 204.1 143 76.9
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 1.2e-50 203.8 137 75.9
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.5e-50 203.4 137 75.9
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 2.0e-50 203.0 143 75.5
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 2.0e-50 203.0 132 79.5
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 2.0e-50 203.0 135 77.0
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 2.0e-50 203.0 135 78.5
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 2.0e-50 203.0 137 75.2
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 2.6e-50 202.6 135 78.5
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.6e-50 202.6 165 70.3
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 3.4e-50 202.2 143 75.5
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 3.4e-50 202.2 143 75.5
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 3.4e-50 202.2 143 75.5
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 3.4e-50 202.2 138 77.5
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 5.7e-50 201.4 143 75.5
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 7.5e-50 201.1 135 76.3
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 7.5e-50 201.1 136 75.7
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 9.8e-50 200.7 135 76.3
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 9.8e-50 200.7 135 76.3
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 9.8e-50 200.7 143 75.5
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 1.7e-49 199.9 135 77.8
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 2.2e-49 199.5 143 74.8
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 2.2e-49 199.5 143 74.8
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 2.2e-49 199.5 135 76.3
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 2.8e-49 199.1 135 75.6
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 2.8e-49 199.1 137 75.9
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 4.8e-49 198.4 162 69.1
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 6.3e-49 198.0 136 75.0
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 8.3e-49 197.6 143 74.1
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 1.4e-48 196.8 137 75.9
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 1.4e-48 196.8 129 77.5
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 1.8e-48 196.4 135 73.3
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 4.1e-48 195.3 143 73.4
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 4.1e-48 195.3 133 75.2
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 5.4e-48 194.9 137 74.5
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 9.1e-48 194.1 137 73.7
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.2e-47 193.7 137 73.7
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.6e-47 193.4 137 75.2
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 2.0e-47 193.0 143 72.7
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 2.0e-47 193.0 133 72.9
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.3e-46 190.3 134 72.4
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.7e-46 189.9 135 74.1
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 2.9e-46 189.1 135 73.3
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 6.6e-46 188.0 136 71.3
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 8.6e-46 187.6 135 71.1
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 7.2e-45 184.5 142 73.2
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 2.1e-44 183.0 137 67.9
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 4.7e-44 181.8 137 67.2
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.8e-43 179.9 133 69.9
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 5.2e-43 178.3 135 65.9
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 5.2e-43 178.3 122 76.2
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 2.7e-39 166.0 139 62.6
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 2.9e-38 162.5 138 63.0
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 2.5e-37 159.5 218 45.4
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 3.3e-37 159.1 139 61.2
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 9.5e-37 157.5 139 61.2
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 6.1e-36 154.8 140 56.4
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.0e-35 154.1 140 59.3
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 5.2e-35 151.8 135 60.7
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 2.6e-34 149.4 118 70.3
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 2.6e-34 149.4 118 70.3
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.6e-34 149.4 94 80.9
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 2.6e-34 149.4 151 57.0
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 3.4e-34 149.1 163 57.7
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 7.0e-32 141.4 143 56.6
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 3.0e-30 136.0 118 66.9
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 5.6e-29 131.7 134 56.7
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 8.0e-28 127.9 80 81.2
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 1.1e-27 127.5 137 54.0
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 5.2e-27 125.2 135 54.1
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 3.7e-25 119.0 143 50.3
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.4e-24 117.1 99 67.7
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 2.4e-24 116.3 95 71.6
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 8.1e-20 101.3 144 43.8
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 7.8e-15 84.7 127 46.5
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 1.3e-14 84.0 56 75.0
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 1.7e-14 83.6 63 69.8
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 3.3e-13 79.3 164 36.0
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 6.8e-11 71.6 48 75.0
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.3e-09 67.4 69 52.2
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.2e-09 66.6 41 73.2
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 3.8e-09 65.9 38 89.5
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 4.9e-09 65.5 56 60.7
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.6e-07 60.5 141 35.5


User provided reference genes

Program Settings