Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 2.7e-133 478.8 260 100.0
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.2e-128 463.4 260 96.5
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 1.6e-125 453.0 255 96.1
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 1.3e-108 396.7 239 85.4
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 5.6e-107 391.3 238 87.0
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 3.0e-84 315.8 221 75.1
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 3.7e-82 308.9 222 72.1
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 1.8e-81 306.6 218 72.0
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 4.0e-81 305.4 219 71.7
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 4.0e-81 305.4 219 71.2
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 3.4e-80 302.4 220 71.8
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 1.0e-79 300.8 218 72.9
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 8.4e-79 297.7 219 71.2
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 1.9e-78 296.6 217 71.9
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 7.1e-78 294.7 218 69.3
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 7.1e-78 294.7 260 62.3
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 9.3e-78 294.3 219 70.3
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 2.1e-77 293.1 219 70.3
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 1.0e-76 290.8 170 88.2
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 1.3e-76 290.4 218 68.3
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 3.9e-76 288.9 258 60.9
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 5.1e-76 288.5 211 68.2
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 6.7e-76 288.1 218 67.4
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 6.7e-76 288.1 219 70.3
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 1.5e-75 287.0 218 67.0
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 4.3e-75 285.4 217 67.7
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 5.7e-75 285.0 258 62.4
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 9.7e-75 284.3 218 66.5
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 1.3e-74 283.9 256 62.1
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.6e-74 283.5 212 69.3
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 1.6e-74 283.5 212 69.3
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 2.1e-74 283.1 258 60.9
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 3.7e-74 282.3 222 68.9
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 3.7e-74 282.3 217 67.7
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 4.8e-74 282.0 251 61.4
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 6.3e-74 281.6 219 68.0
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 1.1e-73 280.8 257 59.5
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.1e-73 280.8 219 68.5
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 1.4e-73 280.4 212 67.9
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 1.4e-73 280.4 220 68.6
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.4e-73 280.4 219 68.5
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 1.8e-73 280.0 218 67.4
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 2.4e-73 279.6 207 67.6
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 4.1e-73 278.9 221 67.9
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 9.0e-73 277.7 249 61.4
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 1.5e-72 276.9 217 66.8
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 2.0e-72 276.6 238 63.0
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 3.4e-72 275.8 257 58.0
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 3.4e-72 275.8 216 65.7
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 4.5e-72 275.4 217 65.4
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 4.5e-72 275.4 219 65.8
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 5.9e-72 275.0 215 66.0
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 5.9e-72 275.0 220 66.8
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 7.6e-72 274.6 197 74.1
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 1.3e-71 273.9 216 66.7
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 1.3e-71 273.9 218 66.1
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 2.2e-71 273.1 211 66.4
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 2.9e-71 272.7 214 65.9
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 2.9e-71 272.7 214 65.9
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 2.9e-71 272.7 219 66.2
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 3.8e-71 272.3 217 65.4
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 3.8e-71 272.3 216 66.2
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 3.8e-71 272.3 263 64.6
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 3.8e-71 272.3 216 68.1
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 5.0e-71 271.9 216 69.4
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 1.1e-70 270.8 210 66.2
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 1.1e-70 270.8 217 64.5
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 1.1e-70 270.8 207 67.6
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 3.2e-70 269.2 210 64.8
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 4.2e-70 268.9 211 65.9
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 7.2e-70 268.1 220 64.5
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 9.3e-70 267.7 197 70.6
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 4.6e-69 265.4 232 60.3
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.6e-69 265.4 206 65.5
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 6.1e-69 265.0 208 64.9
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 6.1e-69 265.0 258 58.1
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 6.1e-69 265.0 221 64.7
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 1.0e-68 264.2 229 61.1
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 2.3e-68 263.1 219 63.5
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 2.3e-68 263.1 207 65.2
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 6.7e-68 261.5 249 55.0
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.1e-67 260.8 206 65.0
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 1.9e-67 260.0 210 65.7
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 2.5e-67 259.6 197 69.5
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 3.3e-67 259.2 219 63.9
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.3e-67 258.8 206 64.6
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 2.8e-66 256.1 214 62.6
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 3.7e-66 255.8 217 61.3
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 8.2e-66 254.6 210 62.9
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 1.4e-65 253.8 219 59.8
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 1.8e-65 253.4 254 57.9
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 1.8e-65 253.4 209 61.7
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 2.4e-65 253.1 218 60.6
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 5.3e-65 251.9 216 60.6
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 2.6e-64 249.6 166 74.1
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 3.4e-64 249.2 189 68.3
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 1.3e-63 247.3 256 55.5
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 1.1e-62 244.2 207 64.3
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 4.2e-62 242.3 159 74.8
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 7.2e-62 241.5 196 63.8
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 7.2e-62 241.5 262 56.5
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 1.6e-61 240.4 217 58.5
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 2.1e-61 240.0 218 59.2
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 2.1e-61 240.0 163 74.2
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 2.1e-61 240.0 210 61.0
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.4e-60 237.3 170 72.9
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 1.5e-59 233.8 210 60.5
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 7.4e-59 231.5 255 51.4
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.7e-58 230.3 179 66.5
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 2.2e-58 229.9 242 52.9
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 2.8e-58 229.6 216 56.9
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 5.3e-57 225.3 196 61.2
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 8.5e-55 218.0 215 53.5
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 2.5e-54 216.5 220 50.9
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 9.4e-54 214.5 155 72.3
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 7.9e-53 211.5 222 56.3
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 8.8e-52 208.0 216 51.9
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.0e-44 184.5 146 64.4
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 1.7e-42 177.2 161 54.7
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 1.7e-39 167.2 120 69.2
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 2.2e-39 166.8 163 50.3
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 2.2e-39 166.8 168 52.4
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 4.7e-37 159.1 131 64.1
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 4.4e-35 152.5 224 44.2
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 1.7e-31 140.6 122 58.2
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 2.3e-28 130.2 182 47.8
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 9.8e-27 124.8 181 39.8
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 1.4e-25 120.9 91 64.8
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 1.8e-25 120.6 135 57.8
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 1.6e-24 117.5 149 51.0
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 4.3e-22 109.4 130 51.5
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 5.6e-22 109.0 144 45.1
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 9.5e-14 81.6 45 80.0
SMO235G0038 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 5.4e-09 65.9 91 44.0
BcaC02g09844 Brassica carinata HOM05D005088 ORTHO05D017652 9.2e-09 65.1 126 38.9
C04p35970 Brassica napus HOM05D005088 ORTHO05D017652 9.2e-09 65.1 126 38.9
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 9.2e-09 65.1 126 38.9
Cc02_g24380 Coffea canephora HOM05D005088 ORTHO05D006914 2.1e-08 63.9 54 63.0
Sc09g0007140 Simmondsia chinensis HOM05D005088 ORTHO05D389638 1.3e-07 61.2 66 53.0


User provided reference genes

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