Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.1e-183 645.6 335 100.0
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.9e-179 632.5 335 97.9
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.4e-179 632.1 335 97.6
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.1e-170 602.4 334 92.5
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 8.7e-169 597.0 335 91.6
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 5.6e-168 594.3 334 91.9
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 2.1e-167 592.4 331 92.1
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 9.0e-158 560.5 329 88.4
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.0e-146 521.2 391 75.4
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 1.8e-142 509.6 317 82.6
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 3.0e-137 492.3 318 78.3
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 5.1e-137 491.5 334 77.2
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 5.1e-137 491.5 325 78.5
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 9.7e-136 487.3 313 79.6
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.4e-134 483.4 308 80.2
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 1.8e-134 483.0 340 75.6
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 5.3e-134 481.5 326 77.6
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 5.3e-134 481.5 335 75.8
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.3e-134 481.5 259 93.1
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.5e-133 479.9 323 77.4
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 2.6e-133 479.2 334 74.6
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 5.9e-133 478.0 333 75.1
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 8.5e-132 474.2 309 79.0
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 1.1e-131 473.8 328 74.7
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 4.2e-131 471.9 329 75.4
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 7.2e-131 471.1 311 77.5
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.6e-130 469.9 334 74.0
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 6.1e-130 468.0 334 74.3
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 7.9e-130 467.6 334 74.6
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 3.0e-129 465.7 334 74.9
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 3.9e-129 465.3 333 74.2
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 3.9e-129 465.3 325 74.5
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 3.9e-129 465.3 328 72.9
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 8.8e-129 464.2 334 72.2
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 1.1e-128 463.8 328 72.6
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 2.6e-128 462.6 335 73.1
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 3.3e-128 462.2 319 75.5
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 3.3e-128 462.2 328 72.6
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 7.4e-128 461.1 304 76.6
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 1.7e-127 459.9 310 77.1
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 2.2e-127 459.5 317 74.4
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 1.1e-126 457.2 335 71.9
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 2.4e-126 456.1 333 72.7
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 4.1e-126 455.3 317 73.8
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 1.5e-125 453.4 324 73.8
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.0e-125 453.0 303 75.9
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 2.0e-125 453.0 322 72.7
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.0e-125 453.0 335 71.3
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.6e-125 452.6 335 71.0
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 2.6e-125 452.6 340 71.5
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 1.0e-124 450.7 324 72.2
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 1.3e-124 450.3 337 70.9
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 2.2e-124 449.5 330 72.4
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 2.9e-124 449.1 320 73.4
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 6.5e-124 448.0 322 72.7
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 1.1e-123 447.2 314 75.2
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 1.4e-123 446.8 323 71.8
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 1.4e-123 446.8 320 73.4
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 1.4e-123 446.8 320 73.4
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 1.4e-123 446.8 326 73.0
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 1.9e-123 446.4 326 72.4
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 3.2e-123 445.7 320 73.1
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 4.2e-123 445.3 335 69.9
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 1.6e-122 443.4 323 72.1
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 2.7e-122 442.6 331 70.1
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 3.6e-122 442.2 322 71.4
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 3.6e-122 442.2 320 72.5
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 3.6e-122 442.2 320 72.5
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 3.6e-122 442.2 330 70.0
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 6.1e-122 441.4 330 70.6
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 7.9e-122 441.0 319 71.2
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.0e-121 440.7 329 69.3
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 1.4e-121 440.3 359 66.3
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.4e-121 440.3 329 69.3
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 2.3e-121 439.5 329 69.3
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.3e-121 439.5 325 69.8
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.1e-120 437.2 325 69.5
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 1.1e-120 437.2 317 72.2
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 3.3e-120 435.6 294 75.2
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 3.3e-120 435.6 336 69.3
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 4.4e-120 435.3 324 71.3
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 5.7e-120 434.9 291 73.9
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 7.4e-120 434.5 329 70.2
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 9.7e-120 434.1 320 71.9
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.3e-119 433.7 289 73.7
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 1.3e-119 433.7 335 69.9
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 2.2e-119 433.0 320 71.6
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 8.2e-119 431.0 320 71.6
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 1.8e-118 429.9 333 68.2
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 2.4e-118 429.5 320 71.9
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 2.4e-118 429.5 320 71.2
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 3.1e-118 429.1 320 70.9
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 4.1e-118 428.7 292 72.3
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 5.3e-118 428.3 287 73.9
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 2.0e-117 426.4 328 68.3
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 2.6e-117 426.0 313 70.6
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 4.5e-117 425.2 322 69.3
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 4.5e-117 425.2 330 67.9
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 7.7e-117 424.5 334 66.8
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 1.3e-116 423.7 326 67.8
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 2.2e-116 422.9 375 63.5
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 6.5e-116 421.4 325 67.4
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 8.5e-116 421.0 338 67.8
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 8.5e-116 421.0 322 70.8
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 9.4e-115 417.5 313 69.6
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 2.7e-114 416.0 335 66.3
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 6.1e-114 414.8 326 71.2
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.0e-113 414.1 292 68.8
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 3.0e-113 412.5 393 60.1
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 2.0e-112 409.8 324 66.7
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.3e-111 407.1 302 66.9
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.3e-111 407.1 330 67.3
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.7e-111 406.8 304 71.7
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 3.7e-111 405.6 317 68.1
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 1.8e-110 403.3 302 73.5
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.8e-110 403.3 317 71.0
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 3.8e-108 395.6 316 65.8
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 3.8e-108 395.6 407 54.8
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 4.2e-107 392.1 317 63.7
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 9.4e-107 391.0 288 68.4
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 1.6e-106 390.2 317 64.4
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 6.1e-106 388.3 323 66.3
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 4.0e-105 385.6 346 63.3
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 3.4e-104 382.5 356 60.4
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 8.3e-103 377.9 334 60.5
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.8e-98 362.8 335 60.9
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 4.1e-94 349.0 328 56.7
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 3.5e-93 345.9 339 58.7
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 2.9e-92 342.8 317 62.8
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 4.3e-91 339.0 321 61.4
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 2.8e-90 336.3 320 60.3
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 6.8e-89 331.6 316 57.9
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 2.6e-88 329.7 297 59.3
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 2.3e-84 316.6 327 55.0
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 5.2e-81 305.4 316 53.2
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 7.0e-78 295.0 248 61.7
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 1.6e-74 283.9 273 59.0
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 9.9e-72 274.6 331 50.8
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 8.3e-71 271.6 223 68.6
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 7.1e-70 268.5 319 49.5
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.6e-69 267.3 181 74.6
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 7.3e-67 258.5 328 49.7
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 1.6e-66 257.3 258 59.7
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 3.4e-64 249.6 158 77.8
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 1.3e-63 247.7 239 60.7
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.7e-63 247.3 137 93.4
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 2.2e-63 246.9 167 75.4
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 2.4e-54 216.9 178 68.5
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.3e-52 211.1 192 63.5
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.2e-46 189.9 161 68.3
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.3e-44 184.5 311 38.9
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 6.7e-36 155.6 159 58.5
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 2.5e-35 153.7 140 63.6
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 9.6e-35 151.8 120 70.0
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 1.8e-33 147.5 354 35.3
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 4.9e-31 139.4 305 34.8
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 3.0e-28 130.2 83 73.5
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 2.7e-21 107.1 99 61.6
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 2.7e-21 107.1 76 61.8
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.5e-19 101.3 90 56.7
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 6.3e-18 95.9 89 56.2
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 2.7e-13 80.5 61 68.9
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 4.4e-11 73.2 43 76.7
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 7.4e-11 72.4 110 46.4
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 2.2e-10 70.9 63 52.4
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 8.2e-10 68.9 52 59.6
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-09 68.6 32 96.9
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-09 68.6 32 96.9
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.1e-09 68.6 32 96.9
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 4.1e-09 66.6 90 47.8
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 1.5e-08 64.7 38 86.8
Gohir.D10G134433 Gossypium hirsutum HOM05D004156 ORTHO05D005798 2.0e-08 64.3 32 90.6
Gorai.008G299000 Gossypium raimondii HOM05D010297 ORTHO05D218902 1.4e-06 58.2 32 81.2
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 2.5e-06 57.4 68 47.1


User provided reference genes

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