Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A03G133105 Gossypium hirsutum HOM05D003359 ORTHO05D217839 1.4e-25 118.6 53 100.0
Gohir.A03G133100 Gossypium hirsutum HOM05D003359 ORTHO05D004472 6.0e-16 86.7 39 94.9
Gorai.005G176600 Gossypium raimondii HOM05D003359 ORTHO05D004472 6.0e-16 86.7 39 94.9
Gohir.D02G157400 Gossypium hirsutum HOM05D003359 ORTHO05D004472 1.3e-15 85.5 39 92.3
Thecc.02G263100 Theobroma cacao HOM05D003359 ORTHO05D004472 2.8e-13 77.8 39 82.1
Duzib251G0748 Durio zibethinus HOM05D003359 ORTHO05D004472 2.4e-12 74.7 38 84.2
Glyma.05G174200 Glycine max HOM05D003359 ORTHO05D004472 2.0e-11 71.6 46 58.7
Glyma.08G131400 Glycine max HOM05D003359 ORTHO05D004472 2.0e-11 71.6 46 58.7
Prupe.1G247000 Prunus persica HOM05D003359 ORTHO05D004472 2.0e-11 71.6 45 64.4
Phvul.001G255500 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 3.4e-11 70.9 45 64.4
VMungo1383G0093 Vigna mungo HOM05D003359 ORTHO05D004472 3.4e-11 70.9 45 64.4
GSVIVG01000554001 Vitis vinifera HOM05D003359 ORTHO05D005275 3.4e-11 70.9 39 74.4
MD13G1098300 Malus domestica HOM05D003359 ORTHO05D004472 4.5e-11 70.5 45 64.4
Glyma.11G243600 Glycine max HOM05D003359 ORTHO05D004472 5.8e-11 70.1 45 64.4
Lj4g0008357 Lotus japonicus HOM05D003359 ORTHO05D004472 7.6e-11 69.7 45 62.2
Psat5g091760 Pisum sativum HOM05D003359 ORTHO05D004472 7.6e-11 69.7 45 64.4
CiPaw.05G179800 Carya illinoinensis HOM05D003359 ORTHO05D004472 9.9e-11 69.3 49 59.2
Lalb_Chr07g0185431 Lupinus albus HOM05D003359 ORTHO05D004472 9.9e-11 69.3 44 65.9
Medtr8g089745 Medicago truncatula HOM05D003359 ORTHO05D004472 9.9e-11 69.3 47 61.7
RcHm_v2.0_Chr4g0433401 Rosa chinensis HOM05D003359 ORTHO05D004472 1.3e-10 68.9 45 64.4
MD13G1098400 Malus domestica HOM05D003359 ORTHO05D004472 1.7e-10 68.6 39 71.8
Ca_17782_v3 Cicer arietinum L. HOM05D003359 ORTHO05D004472 2.2e-10 68.2 46 63.0
Ca_25137_v3 Cicer arietinum L. HOM05D003359 ORTHO05D004472 2.2e-10 68.2 44 63.6
CiPaw.11G025500 Carya illinoinensis HOM05D003359 ORTHO05D004472 2.9e-10 67.8 49 57.1
FvH4_4g25930 Fragaria vesca HOM05D003359 ORTHO05D004472 3.8e-10 67.4 45 64.4
FAN07G2501 Fragaria x ananassa HOM05D003359 ORTHO05D004472 3.8e-10 67.4 45 64.4
FAN12G2341 Fragaria x ananassa HOM05D003359 ORTHO05D004472 3.8e-10 67.4 45 64.4
FAN12G3248 Fragaria x ananassa HOM05D003359 ORTHO05D004472 3.8e-10 67.4 45 64.4
MD16G1099400 Malus domestica HOM05D003359 ORTHO05D004472 3.8e-10 67.4 45 62.2
Potri.010G048400 Populus trichocarpa HOM05D003359 ORTHO05D004472 3.8e-10 67.4 44 65.9
TPR.G6223 Trifolium pratense HOM05D003359 ORTHO05D004472 3.8e-10 67.4 46 60.9
Medtr2g096530 Medicago truncatula HOM05D003359 ORTHO05D004472 4.9e-10 67.0 52 57.7
Phvul.002G259200 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 4.9e-10 67.0 44 59.1
Potri.008G185300 Populus trichocarpa HOM05D003359 ORTHO05D004472 6.4e-10 66.6 50 58.0
arahy.Tifrunner.gnm1.ann1.JIIR6A Arachis hypogaea HOM05D003359 ORTHO05D004472 8.4e-10 66.2 45 57.8
Actinidia37443 Actinidia chinensis HOM05D003359 ORTHO05D004472 1.1e-09 65.9 50 58.0
Lalb_Chr23g0277621 Lupinus albus HOM05D003359 ORTHO05D004472 1.1e-09 65.9 33 75.8
Nn4g22564 Nelumbo nucifera HOM05D003359 ORTHO05D004472 1.4e-09 65.5 32 84.4
Sabra10G0020500 Salix brachista HOM05D003359 ORTHO05D006537 1.4e-09 65.5 38 73.7
Cfa009233 Carpinus fangiana HOM05D003359 ORTHO05D004472 1.9e-09 65.1 50 56.0
Haze_07805 Corylus avellana HOM05D003359 ORTHO05D004472 1.9e-09 65.1 50 56.0
PSO478G4543 Papaver somniferum HOM05D003359 ORTHO05D004472 1.9e-09 65.1 32 84.4
Peaxi162Scf00128g00456 Petunia axillaris HOM05D003359 ORTHO05D004472 1.9e-09 65.1 50 58.0
TAR622G1186 Trochodendron aralioides HOM05D003359 ORTHO05D004472 1.9e-09 65.1 38 71.1
BcaB07g30230 Brassica carinata HOM05D003359 ORTHO05D004472 2.4e-09 64.7 50 56.0
Oeu057546.1 Olea europaea HOM05D003359 ORTHO05D004472 2.4e-09 64.7 50 56.0
PSO017G1803 Papaver somniferum HOM05D003359 ORTHO05D004472 2.4e-09 64.7 32 84.4
Potri.010G048300 Populus trichocarpa HOM05D003359 ORTHO05D004472 2.4e-09 64.7 44 61.4
CANSAT01G0511 Cannabis sativa HOM05D003359 ORTHO05D004472 3.2e-09 64.3 44 65.9
Glyma.18G013500 Glycine max HOM05D003359 ORTHO05D004472 3.2e-09 64.3 39 66.7
Lj3A1060T75 Lonicera japonica HOM05D003359 ORTHO05D004472 3.2e-09 64.3 53 56.6
arahy.Tifrunner.gnm1.ann1.9A08C8 Arachis hypogaea HOM05D003359 ORTHO05D004472 4.2e-09 63.9 33 75.8
Sabra08G0140300 Salix brachista HOM05D003359 ORTHO05D006537 4.2e-09 63.9 39 66.7
Carub.0005s0430 Capsella rubella HOM05D003359 ORTHO05D004472 5.5e-09 63.5 50 56.0
BcaC03g17337 Brassica carinata HOM05D003359 ORTHO05D004472 7.1e-09 63.2 50 56.0
C02p52860 Brassica napus HOM05D003359 ORTHO05D004472 7.1e-09 63.2 50 56.0
BolC2t11365H Brassica oleracea HOM05D003359 ORTHO05D004472 7.1e-09 63.2 50 56.0
BraA02t08464Z Brassica rapa HOM05D003359 ORTHO05D004472 7.1e-09 63.2 50 56.0
Psat7g058680 Pisum sativum HOM05D003359 ORTHO05D004472 7.1e-09 63.2 34 76.5
AL5G15150 Arabidopsis lyrata HOM05D003359 ORTHO05D004472 9.3e-09 62.8 50 56.0
Thhalv10003806m.g Eutrema salsugineum HOM05D003359 ORTHO05D004472 9.3e-09 62.8 50 56.0
Medtr3g086580 Medicago truncatula HOM05D003359 ORTHO05D004472 9.3e-09 62.8 49 55.1
Cpa.g.sc33.46 Carica papaya HOM05D003359 ORTHO05D004472 1.2e-08 62.4 39 69.2
arahy.Tifrunner.gnm1.ann1.6M8RVH Arachis hypogaea HOM05D003359 ORTHO05D004472 1.6e-08 62.0 32 78.1
EL10Ac6g13871 Beta vulgaris HOM05D003359 ORTHO05D004472 1.6e-08 62.0 44 63.6
Ciclev10030938m.g Citrus clementina HOM05D003359 ORTHO05D004472 2.1e-08 61.6 39 66.7
QL03p057181 Quercus lobata HOM05D003359 ORTHO05D004472 2.1e-08 61.6 50 52.0
Sp2g15530 Schrenkiella parvula HOM05D003359 ORTHO05D004472 2.7e-08 61.2 50 54.0
Atru.chr11.2161 Acer truncatum HOM05D003359 ORTHO05D004472 4.6e-08 60.5 31 83.9
CARHR147390 Cardamine hirsuta HOM05D003359 ORTHO05D004472 4.6e-08 60.5 50 54.0
AUR62024240 Chenopodium quinoa HOM05D003359 ORTHO05D004472 4.6e-08 60.5 33 78.8
Lj6g0024639 Lotus japonicus HOM05D003359 ORTHO05D004472 4.6e-08 60.5 33 72.7
Medtr8g089740 Medicago truncatula HOM05D003359 ORTHO05D004472 4.6e-08 60.5 47 51.1
TPR.G6289 Trifolium pratense HOM05D003359 ORTHO05D004472 4.6e-08 60.5 47 55.3
TWI36G1577 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 6.0e-08 60.1 32 78.1
vmacro16179 Vaccinium macrocarpon HOM05D003359 ORTHO05D004472 6.0e-08 60.1 38 65.8
PGR119G1467 Punica granatum HOM05D003359 ORTHO05D004472 7.9e-08 59.7 44 56.8
Aqoxy5G03712 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 1.0e-07 59.3 31 77.4
HanXRQChr08g0208381 Helianthus annuus HOM05D003359 ORTHO05D004472 1.0e-07 59.3 50 54.0
Lsat_1_v5_gn_8_152721 Lactuca sativa HOM05D003359 ORTHO05D004472 1.0e-07 59.3 50 56.0
TWI18G0898 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 1.0e-07 59.3 33 72.7
AT3G26380 Arabidopsis thaliana HOM05D003359 ORTHO05D004472 1.3e-07 58.9 50 52.0
Nitab4.5_0002787g0030 Nicotiana tabacum HOM05D003359 ORTHO05D004472 1.3e-07 58.9 51 54.9
Cc11_g15940 Coffea canephora HOM05D003359 ORTHO05D020488 1.8e-07 58.5 49 51.0
A02p34540 Brassica napus HOM05D003359 ORTHO05D004472 2.3e-07 58.2 50 52.0
TPR.G30530 Trifolium pratense HOM05D003359 ORTHO05D004472 2.3e-07 58.2 39 61.5
AUR62005500 Chenopodium quinoa HOM05D003359 ORTHO05D004472 3.0e-07 57.8 33 78.8
MBI19_g09304_MAGBIO Magnolia biondii HOM05D003359 ORTHO05D004472 3.0e-07 57.8 32 71.9
SGA_v2.0_scaffold71G23972 Striga asiatica HOM05D003359 ORTHO05D004472 3.0e-07 57.8 45 62.2
QL03p057173 Quercus lobata HOM05D003359 ORTHO05D004472 3.9e-07 57.4 39 61.5
CSS0009419 Camellia sinensis var. sinensis HOM05D003359 ORTHO05D004472 5.1e-07 57.0 45 55.6
ATR0824G097 Amborella trichopoda HOM05D003359 ORTHO05D004472 6.7e-07 56.6 30 73.3
Aa31LG2G6140 Aethionema arabicum HOM05D003359 ORTHO05D006537 8.7e-07 56.2 48 54.2
ECA233G4229 Erigeron canadensis HOM05D003359 ORTHO05D004472 1.1e-06 55.8 50 54.0
Sc14g0008780 Simmondsia chinensis HOM05D003359 ORTHO05D004472 1.1e-06 55.8 34 67.6
Eucgr.H02477 Eucalyptus grandis HOM05D003359 ORTHO05D004472 1.9e-06 55.1 31 67.7
Sopen05g008640 Solanum pennellii HOM05D003359 ORTHO05D004472 1.9e-06 55.1 50 52.0
PGSC0003DMG400011728 Solanum tuberosum HOM05D003359 ORTHO05D004472 1.9e-06 55.1 50 52.0
Zm00001eb409230 Zea mays HOM05D003359 ORTHO05D004472 1.9e-06 55.1 32 68.8
SalBow2G2300 Salvia bowleyana HOM05D003359 ORTHO05D020488 3.3e-06 54.3 38 60.5
Eucgr.H02480 Eucalyptus grandis HOM05D003359 ORTHO05D004472 4.3e-06 53.9 42 52.4
Solyc05g013720.3 Solanum lycopersicum HOM05D003359 ORTHO05D004472 5.6e-06 53.5 50 50.0
THA.LOC104805279 Tarenaya hassleriana HOM05D003359 ORTHO05D004472 9.6e-06 52.8 50 52.0


User provided reference genes

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