Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 3.0e-100 368.6 202 100.0
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 6.7e-100 367.5 202 99.5
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 6.7e-100 367.5 202 99.5
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 3.4e-91 338.6 202 91.1
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 6.3e-90 334.3 202 90.6
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 2.0e-88 329.3 202 89.1
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 1.6e-85 319.7 203 86.7
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 5.9e-80 301.2 202 82.2
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 7.7e-80 300.8 202 80.2
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 7.7e-80 300.8 202 81.7
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 3.8e-79 298.5 200 81.0
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 9.5e-78 293.9 202 80.2
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 6.1e-77 291.2 203 82.3
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 8.0e-77 290.8 202 78.2
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 4.0e-76 288.5 195 80.0
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 5.2e-76 288.1 203 80.3
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 2.6e-75 285.8 202 79.2
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 3.4e-75 285.4 203 77.3
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 4.4e-75 285.0 197 78.2
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 5.7e-75 284.6 202 78.7
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 2.8e-74 282.3 201 80.6
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 6.3e-74 281.2 203 76.4
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.4e-73 280.0 203 76.4
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 9.2e-73 277.3 168 90.5
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 9.2e-73 277.3 204 76.0
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 2.0e-72 276.2 204 76.5
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 3.5e-72 275.4 203 74.9
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 2.5e-70 269.2 195 75.9
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 1.2e-69 266.9 193 75.1
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 6.1e-69 264.6 204 72.5
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 8.0e-69 264.2 204 75.0
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 6.8e-68 261.2 203 73.9
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 8.9e-68 260.8 201 76.1
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.5e-67 260.0 206 75.2
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 1.5e-67 260.0 194 74.7
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 2.6e-67 259.2 205 73.2
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 5.8e-67 258.1 203 74.4
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 5.8e-67 258.1 202 73.3
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 9.8e-67 257.3 204 72.1
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 1.3e-66 256.9 206 72.3
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 1.7e-66 256.5 202 71.3
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 3.7e-66 255.4 197 74.1
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 1.9e-65 253.1 205 72.7
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 3.2e-65 252.3 204 68.1
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 4.1e-65 251.9 203 70.0
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 4.1e-65 251.9 207 76.3
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 2.7e-64 249.2 204 72.1
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 2.7e-64 249.2 209 71.3
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 4.6e-64 248.4 206 71.4
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 5.0e-63 245.0 204 70.6
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 6.6e-63 244.6 210 69.5
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 8.6e-63 244.2 204 70.6
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 1.1e-62 243.8 204 69.6
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 2.5e-62 242.7 210 69.0
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 5.6e-62 241.5 206 68.0
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 4.7e-61 238.4 207 67.6
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 1.1e-60 237.3 206 67.5
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 1.1e-60 237.3 206 70.4
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 1.8e-60 236.5 206 67.0
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 4.0e-60 235.3 205 65.9
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 4.0e-60 235.3 214 66.4
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 6.8e-60 234.6 204 67.2
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 6.8e-60 234.6 210 68.1
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 8.9e-60 234.2 201 68.7
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.4e-59 232.3 206 68.0
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 5.8e-59 231.5 208 66.8
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 5.8e-59 231.5 206 68.0
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 7.5e-59 231.1 207 66.7
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 7.5e-59 231.1 210 68.1
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 1.3e-58 230.3 207 67.1
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.3e-58 230.3 207 67.1
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.7e-58 229.9 206 67.0
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.7e-58 229.9 206 67.0
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 4.9e-58 228.4 204 66.7
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 1.4e-57 226.9 203 66.5
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 5.4e-57 224.9 213 64.8
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 9.2e-57 224.2 205 64.9
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.2e-56 223.8 204 61.8
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.2e-56 223.8 203 66.0
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 4.6e-56 221.9 201 63.7
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 6.0e-56 221.5 207 65.2
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 7.8e-56 221.1 204 63.2
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.0e-55 220.7 198 65.7
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 1.3e-55 220.3 215 63.3
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 3.0e-55 219.2 208 64.4
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 3.9e-55 218.8 205 64.9
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 3.9e-55 218.8 203 63.5
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.1e-54 217.2 200 65.0
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.9e-54 216.5 203 65.5
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 3.3e-54 215.7 202 65.8
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 5.6e-54 214.9 203 66.5
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 1.2e-53 213.8 199 62.8
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.6e-53 212.2 209 62.7
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 1.4e-52 210.3 196 64.3
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 2.3e-52 209.5 203 65.0
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 2.6e-51 206.1 201 62.2
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 3.4e-51 205.7 206 60.2
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 2.2e-50 203.0 205 61.0
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 2.9e-50 202.6 206 62.6
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 4.9e-50 201.8 207 63.8
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 4.6e-48 195.3 203 59.1
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 1.3e-47 193.7 204 58.3
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 3.0e-47 192.6 165 67.9
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 1.1e-46 190.7 215 57.2
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 2.5e-46 189.5 195 56.4
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 4.3e-46 188.7 206 58.7
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 5.6e-46 188.3 216 57.4
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 5.6e-46 188.3 216 57.4
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 5.6e-46 188.3 215 56.3
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 5.6e-46 188.3 204 58.3
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 9.6e-46 187.6 217 56.7
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 9.6e-46 187.6 217 56.7
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 9.6e-46 187.6 217 56.7
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 1.6e-45 186.8 218 55.5
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 3.6e-45 185.7 207 58.5
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 1.1e-44 184.1 217 59.0
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 1.4e-44 183.7 218 56.4
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 1.4e-44 183.7 218 56.4
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 1.8e-44 183.3 219 56.6
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 5.2e-44 181.8 206 58.3
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 1.2e-43 180.6 212 57.1
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 3.4e-43 179.1 196 56.6
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 1.7e-42 176.8 210 56.2
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 2.2e-42 176.4 205 57.1
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 2.9e-42 176.0 211 55.9
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 3.8e-42 175.6 182 59.3
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 8.4e-42 174.5 201 54.2
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 1.9e-41 173.3 210 55.2
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 2.4e-41 172.9 213 54.9
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 4.2e-41 172.2 206 54.9
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 5.4e-41 171.8 192 57.3
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 5.4e-41 171.8 197 51.8
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 1.3e-37 160.6 197 48.2
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 2.1e-37 159.8 176 61.4
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 3.1e-36 156.0 122 73.8
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 9.0e-36 154.5 204 46.1
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 1.4e-33 147.1 115 69.6
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.9e-33 146.7 205 47.3
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 4.2e-33 145.6 206 47.6
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 2.1e-32 143.3 205 46.3
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.0e-31 141.0 177 49.7
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 8.7e-31 137.9 143 50.3
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 4.3e-30 135.6 143 52.4
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.1e-28 131.0 211 40.3
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.4e-28 130.6 204 41.7
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 2.9e-26 122.9 130 57.7
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 2.1e-24 116.7 134 55.2
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 2.1e-24 116.7 158 44.9
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.7e-24 116.3 132 53.8
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 1.5e-22 110.5 156 54.5
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 2.1e-21 106.7 142 48.6
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 6.9e-20 101.7 177 45.8
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 1.3e-18 97.4 204 39.2
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 6.5e-18 95.1 98 56.1
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 8.4e-18 94.7 78 64.1
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 1.1e-17 94.4 140 45.0
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.4e-17 94.0 143 46.9
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 2.1e-16 90.1 89 65.2
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 2.4e-12 76.6 124 40.3
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 1.2e-08 64.3 190 28.9
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 2.7e-08 63.2 140 32.9


User provided reference genes

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