Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 9.1e-179 630.9 563 100.0
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 2.6e-157 559.7 554 95.5
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 6.0e-146 521.9 555 91.2
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 1.9e-144 516.9 561 90.4
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 7.1e-123 445.3 560 84.3
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 1.3e-121 441.0 336 84.5
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 1.5e-120 437.6 570 82.1
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 4.3e-120 436.0 569 81.9
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 5.3e-118 429.1 336 81.8
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 4.9e-116 422.5 336 81.5
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 6.0e-114 415.6 555 80.9
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 1.1e-102 378.3 306 79.4
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 4.0e-102 376.3 303 82.2
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 2.2e-100 370.5 303 81.8
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 8.4e-100 368.6 305 79.0
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 1.4e-99 367.9 305 79.0
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 4.2e-99 366.3 306 78.8
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 1.2e-98 364.8 305 79.0
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 3.5e-98 363.2 305 78.0
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 4.6e-98 362.8 305 77.7
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 4.6e-98 362.8 305 77.7
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 6.0e-98 362.5 329 75.1
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 6.0e-98 362.5 305 77.7
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 7.9e-98 362.1 305 79.3
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 1.0e-97 361.7 298 79.2
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 5.1e-97 359.4 305 77.4
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 8.7e-97 358.6 340 71.8
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 8.7e-97 358.6 314 76.1
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 8.7e-97 358.6 304 78.6
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 1.5e-96 357.8 305 78.0
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.5e-96 357.8 303 77.9
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 2.5e-96 357.1 305 77.7
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 7.4e-96 355.5 303 77.2
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 9.6e-96 355.1 303 78.2
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 9.6e-96 355.1 299 78.6
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 1.3e-95 354.8 303 77.6
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.3e-95 354.8 303 77.6
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 4.8e-95 352.8 303 77.9
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 8.2e-95 352.1 305 75.4
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 1.4e-94 351.3 303 77.6
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 4.1e-94 349.7 304 76.6
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 4.1e-94 349.7 303 77.2
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 6.9e-94 349.0 303 74.9
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 2.0e-93 347.4 295 78.6
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 4.5e-93 346.3 303 76.2
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 5.8e-93 345.9 303 76.2
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 2.2e-92 344.0 304 74.7
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 2.9e-92 343.6 304 75.3
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 6.5e-92 342.4 295 76.6
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 8.4e-92 342.0 295 77.3
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 8.4e-92 342.0 304 75.0
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 8.4e-92 342.0 303 76.2
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 8.4e-92 342.0 304 74.3
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 1.1e-91 341.7 299 76.6
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 1.9e-91 340.9 298 76.5
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 1.9e-91 340.9 304 75.0
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 2.5e-91 340.5 304 73.4
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 3.2e-91 340.1 304 74.3
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 3.2e-91 340.1 330 65.2
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 4.2e-91 339.7 304 74.3
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 4.2e-91 339.7 305 75.4
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 7.1e-91 339.0 304 75.3
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 9.3e-91 338.6 329 71.7
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.6e-90 337.8 327 57.2
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 1.6e-90 337.8 305 75.4
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 1.6e-90 337.8 318 72.0
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 6.1e-90 335.9 314 73.2
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 7.9e-90 335.5 298 76.2
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 1.0e-89 335.1 304 73.7
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.0e-89 335.1 329 71.4
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 1.0e-89 335.1 304 76.0
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 1.3e-89 334.7 323 70.6
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 1.3e-89 334.7 305 73.4
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 1.8e-89 334.3 297 77.4
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 3.9e-89 333.2 323 55.1
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 1.1e-88 331.6 298 68.5
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 3.3e-88 330.1 305 74.8
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 7.4e-88 328.9 313 73.5
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 9.7e-88 328.6 303 74.3
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 1.3e-87 328.2 305 59.0
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 8.2e-87 325.5 303 74.3
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 8.2e-87 325.5 304 72.4
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.1e-86 325.1 303 73.9
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.4e-86 324.7 303 73.9
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 5.3e-86 322.8 317 71.3
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 9.7e-80 302.0 304 70.1
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 9.7e-80 302.0 304 70.1
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 1.7e-79 301.2 304 69.7
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 3.7e-79 300.1 304 69.7
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 3.1e-78 297.0 309 68.3
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 1.0e-76 292.0 305 68.5
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 1.3e-76 291.6 292 71.2
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 1.3e-76 291.6 304 68.8
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 3.6e-74 283.5 291 69.8
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 6.3e-71 272.7 283 72.1
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 1.8e-70 271.2 291 65.6
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 9.7e-64 248.8 213 83.6
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 1.3e-63 248.4 526 62.7
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 4.1e-54 216.9 148 70.3
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.2e-50 205.3 136 70.6
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 1.0e-49 202.2 148 64.2
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 1.4e-49 201.8 144 68.8
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 2.0e-48 198.0 196 79.1
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 8.3e-39 166.0 103 80.6
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 8.3e-39 166.0 103 79.6
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 5.0e-36 156.8 262 51.5
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 1.2e-32 145.6 269 49.1
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 4.9e-31 140.2 92 72.8
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 1.7e-28 131.7 267 47.6
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 3.1e-25 120.9 298 32.6
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 9.8e-24 115.9 80 68.8
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 1.7e-20 105.1 90 57.8
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 5.1e-20 103.6 74 70.3
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 8.1e-18 96.3 93 57.0
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 1.9e-11 75.1 77 55.8
Lj5g0013792 Lotus japonicus HOM05D006642 ORTHO05D008856 6.2e-10 70.1 48 68.8
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 3.2e-06 57.8 113 28.3
Lj1A585G40 Lonicera japonica HOM05D006642 ORTHO05D027104 4.2e-06 57.4 31 90.3
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 7.1e-06 56.6 113 27.4


User provided reference genes

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