Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G048400 Glycine max HOM05D002112 ORTHO05D005830 1.4e-210 736.1 384 100.0
Glyma.13G074600 Glycine max HOM05D002112 ORTHO05D005830 4.1e-199 698.0 384 94.8
VMungo0540G0891 Vigna mungo HOM05D002112 ORTHO05D005830 8.6e-189 663.7 384 91.1
Phvul.006G021000 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 1.9e-180 636.0 384 86.7
Lj6g0007258 Lotus japonicus HOM05D002112 ORTHO05D005830 9.6e-180 633.6 384 84.9
Ca_04336_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 1.9e-175 619.4 384 84.4
Haze_01451 Corylus avellana HOM05D002112 ORTHO05D005830 3.9e-165 585.1 384 78.1
Medtr3g040090 Medicago truncatula HOM05D002112 ORTHO05D005830 4.0e-162 575.1 384 79.2
arahy.Tifrunner.gnm1.ann1.PNXW1P Arachis hypogaea HOM05D002112 ORTHO05D005830 7.1e-159 564.3 391 76.0
arahy.Tifrunner.gnm1.ann1.9N9T88 Arachis hypogaea HOM05D002112 ORTHO05D005830 1.6e-158 563.1 391 76.0
QL10p051275 Quercus lobata HOM05D002112 ORTHO05D005830 1.6e-158 563.1 383 76.0
TPR.G11324 Trifolium pratense HOM05D002112 ORTHO05D005830 4.6e-158 561.6 384 76.0
Lalb_Chr17g0347631 Lupinus albus HOM05D002112 ORTHO05D005830 6.0e-158 561.2 385 75.3
GSVIVG01010853001 Vitis vinifera HOM05D002112 ORTHO05D005830 3.0e-157 558.9 384 74.2
CiPaw.01G095700 Carya illinoinensis HOM05D002112 ORTHO05D005830 1.1e-156 557.0 384 74.5
Dinv17874 Davidia involucrata HOM05D002112 ORTHO05D005830 1.1e-156 557.0 384 75.0
Atru.chr4.1269 Acer truncatum HOM05D002112 ORTHO05D005830 1.5e-156 556.6 384 75.3
Ca_06168_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 7.4e-156 554.3 381 75.3
Ca_06185_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 7.4e-156 554.3 381 75.3
Lalb_Chr04g0249531 Lupinus albus HOM05D002112 ORTHO05D005830 1.1e-154 550.4 386 74.6
Lj2A342T117 Lonicera japonica HOM05D002112 ORTHO05D005830 3.8e-152 542.0 387 72.9
Medtr5g088340 Medicago truncatula HOM05D002112 ORTHO05D005830 8.4e-152 540.8 384 72.4
Psat2g021160 Pisum sativum HOM05D002112 ORTHO05D005830 2.5e-151 539.3 385 72.2
Manes.04G047300 Manihot esculenta HOM05D002112 ORTHO05D005830 4.2e-151 538.5 384 71.9
TAR369G0031 Trochodendron aralioides HOM05D002112 ORTHO05D005830 5.5e-151 538.1 385 72.7
Duzib151G0469 Durio zibethinus HOM05D002112 ORTHO05D005830 9.3e-151 537.3 386 73.6
Actinidia22156 Actinidia chinensis HOM05D002112 ORTHO05D005830 2.1e-150 536.2 384 70.3
Sc19g0002800 Simmondsia chinensis HOM05D002112 ORTHO05D005830 1.8e-149 533.1 384 70.3
RcHm_v2.0_Chr2g0118821 Rosa chinensis HOM05D002112 ORTHO05D005830 2.3e-149 532.7 384 73.7
Prupe.1G198700 Prunus persica HOM05D002112 ORTHO05D005830 3.3e-148 528.9 375 74.1
Ciclev10020598m.g Citrus clementina HOM05D002112 ORTHO05D005830 5.7e-148 528.1 384 70.3
Gohir.D10G126900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 7.4e-148 527.7 387 71.8
Gohir.A10G139900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 1.3e-147 526.9 387 71.6
CANSAT78G1637 Cannabis sativa HOM05D002112 ORTHO05D005830 6.3e-147 524.6 384 69.5
Gorai.011G139800 Gossypium raimondii HOM05D002112 ORTHO05D005830 8.2e-147 524.2 387 71.6
Actinidia04201 Actinidia chinensis HOM05D002112 ORTHO05D005830 1.1e-146 523.9 416 66.3
Thhalv10020922m.g Eutrema salsugineum HOM05D002112 ORTHO05D005830 1.1e-146 523.9 386 71.2
Sabra17G0000800 Salix brachista HOM05D002112 ORTHO05D005830 1.8e-146 523.1 371 73.6
THA.LOC104817851 Tarenaya hassleriana HOM05D002112 ORTHO05D005830 1.8e-146 523.1 368 72.8
Thecc.04G174100 Theobroma cacao HOM05D002112 ORTHO05D005830 2.4e-146 522.7 387 70.5
DCAR_007772 Daucus carota HOM05D002112 ORTHO05D005830 4.1e-146 521.9 378 71.7
Sabra17G0015800 Salix brachista HOM05D002112 ORTHO05D005830 4.1e-146 521.9 371 73.3
Rhsim07G0082300 Rhododendron simsii HOM05D002112 ORTHO05D005830 2.0e-145 519.6 388 68.6
MD04G1045800 Malus domestica HOM05D002112 ORTHO05D005830 2.6e-145 519.2 384 70.8
HanXRQChr02g0033051 Helianthus annuus HOM05D002112 ORTHO05D005830 1.3e-144 516.9 337 75.4
CARHR095970 Cardamine hirsuta HOM05D002112 ORTHO05D005830 2.9e-144 515.8 388 70.1
Sp3g18350 Schrenkiella parvula HOM05D002112 ORTHO05D005830 3.8e-144 515.4 386 70.2
Solyc02g082030.3 Solanum lycopersicum HOM05D002112 ORTHO05D005830 8.5e-144 514.2 354 71.8
Sopen02g026670 Solanum pennellii HOM05D002112 ORTHO05D005830 8.5e-144 514.2 354 71.8
HanXRQChr12g0380031 Helianthus annuus HOM05D002112 ORTHO05D005830 1.4e-143 513.5 320 79.4
TWI38G0996 Tripterygium wilfordii HOM05D002112 ORTHO05D005830 4.2e-143 511.9 388 69.3
COL.COLO4_08219 Corchorus olitorius HOM05D002112 ORTHO05D005830 5.5e-143 511.5 384 70.3
Peaxi162Scf00036g02120 Petunia axillaris HOM05D002112 ORTHO05D005830 5.5e-143 511.5 360 70.3
PGSC0003DMG400007324 Solanum tuberosum HOM05D002112 ORTHO05D005830 9.4e-143 510.8 390 67.2
Carub.0003s2027 Capsella rubella HOM05D002112 ORTHO05D005830 1.2e-142 510.4 386 69.7
vmacro13897 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 1.6e-142 510.0 387 68.5
MBI14_g20102_MAGBIO Magnolia biondii HOM05D002112 ORTHO05D005830 2.1e-142 509.6 384 68.0
C05p44010 Brassica napus HOM05D002112 ORTHO05D005377 2.7e-142 509.2 382 68.6
Aa31LG8G7130 Aethionema arabicum HOM05D002112 ORTHO05D005830 3.6e-142 508.8 375 70.1
ECA246G0582 Erigeron canadensis HOM05D002112 ORTHO05D005830 3.6e-142 508.8 325 77.2
AL3G34040 Arabidopsis lyrata HOM05D002112 ORTHO05D005830 4.6e-142 508.4 375 70.4
BolC5t33124H Brassica oleracea HOM05D002112 ORTHO05D005830 4.6e-142 508.4 382 68.6
Sabra07G0106900 Salix brachista HOM05D002112 ORTHO05D005830 4.6e-142 508.4 386 69.2
Sabra07G0118800 Salix brachista HOM05D002112 ORTHO05D005830 4.6e-142 508.4 386 69.2
BcaC05g28317 Brassica carinata HOM05D002112 ORTHO05D005377 6.1e-142 508.1 382 68.6
Potri.017G026100 Populus trichocarpa HOM05D002112 ORTHO05D005830 6.1e-142 508.1 386 68.9
Potri.007G131700 Populus trichocarpa HOM05D002112 ORTHO05D005830 7.9e-142 507.7 380 70.5
A05p28600 Brassica napus HOM05D002112 ORTHO05D005377 1.4e-141 506.9 382 68.8
BraA05t21737Z Brassica rapa HOM05D002112 ORTHO05D005377 1.4e-141 506.9 382 68.8
FvH4_1g23450 Fragaria vesca HOM05D002112 ORTHO05D005830 1.8e-141 506.5 384 70.6
FAN19G2557 Fragaria x ananassa HOM05D002112 ORTHO05D005830 1.8e-141 506.5 384 70.6
CAN.G809.29 Capsicum annuum HOM05D002112 ORTHO05D005830 3.0e-141 505.8 320 75.6
AUR62031652 Chenopodium quinoa HOM05D002112 ORTHO05D005830 3.0e-141 505.8 386 67.1
FAN26G0200 Fragaria x ananassa HOM05D002112 ORTHO05D005830 3.0e-141 505.8 384 70.6
Migut.M02025 Erythranthe guttata HOM05D002112 ORTHO05D005830 3.9e-141 505.4 346 72.5
Glyma.14G040300 Glycine max HOM05D002112 ORTHO05D005830 3.9e-141 505.4 385 67.5
QL11p031638 Quercus lobata HOM05D002112 ORTHO05D005830 3.9e-141 505.4 383 67.1
Cc09_g04780 Coffea canephora HOM05D002112 ORTHO05D005830 5.1e-141 505.0 391 68.0
Eucgr.I00215 Eucalyptus grandis HOM05D002112 ORTHO05D005830 8.8e-141 504.2 365 71.0
Nitab4.5_0000632g0010 Nicotiana tabacum HOM05D002112 ORTHO05D005830 1.1e-140 503.8 390 66.4
FAN23G2661 Fragaria x ananassa HOM05D002112 ORTHO05D005830 2.5e-140 502.7 384 70.3
PSO339G3553 Papaver somniferum HOM05D002112 ORTHO05D005830 2.5e-140 502.7 385 66.8
Phvul.008G205800 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 4.8e-139 498.4 386 69.4
Nn2g10363 Nelumbo nucifera HOM05D002112 ORTHO05D005830 1.1e-138 497.3 359 71.0
BolC1t04335H Brassica oleracea HOM05D002112 ORTHO05D005377 3.1e-138 495.7 372 69.4
Aqoxy7G04120 Aquilegia oxysepala HOM05D002112 ORTHO05D005830 2.0e-137 493.0 382 66.5
BcaB04g20660 Brassica carinata HOM05D002112 ORTHO05D005830 7.7e-137 491.1 372 69.1
C01p43770 Brassica napus HOM05D002112 ORTHO05D005830 7.7e-137 491.1 368 68.8
SalBow5G0693 Salvia bowleyana HOM05D002112 ORTHO05D005830 1.0e-136 490.7 389 67.4
BcaC09g48987 Brassica carinata HOM05D002112 ORTHO05D005377 2.2e-136 489.6 368 68.8
Dinv21066 Davidia involucrata HOM05D002112 ORTHO05D005830 3.2e-135 485.7 386 67.4
VMungo0647G1998 Vigna mungo HOM05D002112 ORTHO05D005830 4.7e-134 481.9 385 68.1
unitig_748.g7486 Utricularia gibba HOM05D002112 ORTHO05D005830 3.9e-133 478.8 348 68.7
CiPaw.06G167000 Carya illinoinensis HOM05D002112 ORTHO05D005830 4.4e-132 475.3 384 65.1
MELO3C015704.2 Cucumis melo HOM05D002112 ORTHO05D005830 8.2e-131 471.1 385 64.9
DCAR_003742 Daucus carota HOM05D002112 ORTHO05D005830 8.2e-131 471.1 356 68.8
Peaxi162Scf00276g01115 Petunia axillaris HOM05D002112 ORTHO05D005830 3.5e-129 465.7 373 65.7
Nitab4.5_0003902g0080 Nicotiana tabacum HOM05D002112 ORTHO05D005830 1.7e-128 463.4 330 69.4
ATR0559G336 Amborella trichopoda HOM05D002112 ORTHO05D005830 8.5e-128 461.1 331 69.5
EL10Ac2g03438 Beta vulgaris HOM05D002112 ORTHO05D005830 5.5e-127 458.4 384 61.7
Duzib212G0454 Durio zibethinus HOM05D002112 ORTHO05D005830 1.8e-125 453.4 385 64.9
SGA_v2.0_scaffold16G07839 Striga asiatica HOM05D002112 ORTHO05D005830 2.3e-125 453.0 486 53.1
Haze_10243 Corylus avellana HOM05D002112 ORTHO05D005830 1.7e-123 446.8 384 61.7
BraA01t03533Z Brassica rapa HOM05D002112 ORTHO05D005830 1.8e-122 443.4 372 65.3
Ah.14g085620 Amaranthus hybridus HOM05D002112 ORTHO05D005830 5.9e-121 438.3 379 62.0
Zm00001eb362140 Zea mays HOM05D002112 ORTHO05D005830 6.5e-120 434.9 375 58.9
CDE08G1601 Ceratophyllum demersum HOM05D002112 ORTHO05D005830 1.0e-117 427.6 384 57.6
ClCG09G018870 Citrullus lanatus HOM05D002112 ORTHO05D005830 1.4e-117 427.2 455 54.3
Os01g0974000 Oryza sativa ssp. japonica HOM05D002112 ORTHO05D005830 3.4e-116 422.5 322 64.9
Hma1.2p1_2907F.1_g330140 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 1.3e-115 420.6 338 66.9
Gohir.A02G114100 Gossypium hirsutum HOM05D002112 ORTHO05D005830 1.4e-114 417.2 326 67.2
Lsat_1_v5_gn_3_102740 Lactuca sativa HOM05D002112 ORTHO05D005830 7.7e-113 411.4 317 66.9
vmacro12410 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 5.5e-111 405.2 271 76.8
SEGI_07155 Sequoiadendron giganteum HOM05D002112 ORTHO05D005830 3.0e-109 399.4 313 62.0
BcaB06g26098 Brassica carinata HOM05D002112 ORTHO05D005377 2.6e-108 396.4 325 64.6
Psat5g187680 Pisum sativum HOM05D002112 ORTHO05D005830 1.1e-106 391.0 284 74.3
PSO151G0006 Papaver somniferum HOM05D002112 ORTHO05D005830 2.9e-104 382.9 368 57.3
HPP92_018143 Vanilla planifolia HOM05D002112 ORTHO05D005830 5.6e-103 378.6 352 54.5
Gohir.A08G075500 Gossypium hirsutum HOM05D002112 ORTHO05D005830 2.8e-102 376.3 285 68.1
Oeu010462.1 Olea europaea HOM05D002112 ORTHO05D005830 4.0e-101 372.5 283 66.1
MSTRG.24953 Avicennia marina HOM05D002112 ORTHO05D005830 5.2e-101 372.1 280 66.8
Sed0017575 Sechium edule HOM05D002112 ORTHO05D005830 1.3e-99 367.5 287 66.6
Lj1A1151T82 Lonicera japonica HOM05D002112 ORTHO05D005830 6.4e-99 365.2 290 64.1
Mapoly0038s0049 Marchantia polymorpha HOM05D002112 ORTHO05D005830 6.4e-99 365.2 342 51.8
AT3G20320 Arabidopsis thaliana HOM05D002112 ORTHO05D005830 3.5e-97 359.4 286 65.7
ClCG02G003310 Citrullus lanatus HOM05D002112 ORTHO05D005830 7.8e-97 358.2 309 62.5
CsaV3_7G002030 Cucumis sativus L. HOM05D002112 ORTHO05D005830 1.7e-96 357.1 287 64.5
Pp3c12_4060 Physcomitrium patens HOM05D002112 ORTHO05D005830 6.6e-96 355.1 347 50.4
Pp3c3_12480 Physcomitrium patens HOM05D002112 ORTHO05D005830 3.3e-95 352.8 338 51.5
A01p34360 Brassica napus HOM05D002112 ORTHO05D005830 1.6e-94 350.5 273 66.7
SMO356G0377 Selaginella moellendorffii HOM05D002112 ORTHO05D005830 1.6e-94 350.5 306 56.9
Cfa004646 Carpinus fangiana HOM05D002112 ORTHO05D005830 8.9e-93 344.7 323 56.7
MD13G1257900 Malus domestica HOM05D002112 ORTHO05D005830 2.0e-92 343.6 291 63.9
CBR_g24153 Chara braunii HOM05D002112 ORTHO05D005830 1.9e-90 337.0 309 53.4
Hund03181 Selenicereus undatus HOM05D002112 ORTHO05D005830 4.1e-90 335.9 276 63.8
AagrBONN_evm.TU.Sc2ySwM_362.2463 Anthoceros agrestis HOM05D002112 ORTHO05D005830 1.3e-88 330.9 311 54.0
SHI29120 Sapria himalayana HOM05D002112 ORTHO05D005830 1.9e-87 327.0 373 49.1
Zm00001eb139760 Zea mays HOM05D002112 ORTHO05D005830 1.6e-86 323.9 275 59.3
TAR623G0168 Trochodendron aralioides HOM05D002112 ORTHO05D005830 2.7e-81 306.6 238 65.5
Peaxi162Scf00580g00069 Petunia axillaris HOM05D002112 ORTHO05D005830 1.2e-78 297.7 220 68.2
QL02p069440 Quercus lobata HOM05D002112 ORTHO05D005830 1.9e-74 283.9 213 65.3
MCO07G431 Micromonas commoda HOM05D002112 ORTHO05D005830 3.2e-74 283.1 316 46.2
Cre16.g694400 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D005830 8.7e-64 248.4 300 42.7
PRCOL_00002736 Prasinoderma coloniale HOM05D002112 ORTHO05D005830 1.9e-63 247.3 302 42.4
Sc07g0004100 Simmondsia chinensis HOM05D002112 ORTHO05D005830 9.0e-53 211.8 175 60.6
Glyma.02G275800 Glycine max HOM05D002112 ORTHO05D005830 9.3e-50 201.8 175 60.6
TAR623G1172 Trochodendron aralioides HOM05D002112 ORTHO05D005830 5.6e-47 192.6 129 79.8
Cpa.g.c39485 Carica papaya HOM05D002112 ORTHO05D005830 4.9e-43 179.5 127 69.3
Oeu010464.1 Olea europaea HOM05D002112 ORTHO05D005830 7.4e-39 165.6 104 83.7
AUR62038882 Chenopodium quinoa HOM05D002112 ORTHO05D005830 9.6e-39 165.2 97 87.6
Lj1A1151T83 Lonicera japonica HOM05D002112 ORTHO05D005830 2.1e-38 164.1 97 88.7
FAN28G2322 Fragaria x ananassa HOM05D002112 ORTHO05D005830 3.7e-38 163.3 101 84.2
Oeu037772.1 Olea europaea HOM05D002112 ORTHO05D005830 6.3e-38 162.5 101 83.2
MD13G1258100 Malus domestica HOM05D002112 ORTHO05D005830 3.8e-27 126.7 77 81.8
Gohir.A08G072300 Gossypium hirsutum HOM05D002112 ORTHO05D010805 5.5e-26 122.9 105 61.0
A01p34370 Brassica napus HOM05D000233 ORTHO05D000020 1.0e-19 102.1 59 81.4
Peaxi162Scf00036g02121 Petunia axillaris HOM05D002112 ORTHO05D005830 3.8e-19 100.1 61 82.0
Cre09.g395028 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D143200 3.5e-12 77.0 105 38.1
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 3.5e-12 77.0 73 54.8
Sc07g0004110 Simmondsia chinensis HOM05D002112 ORTHO05D010805 3.2e-10 70.5 51 64.7
Hma1.2p1_1220F.1_g268110 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 5.2e-08 63.2 40 80.0
Hma1.2p1_1220F.1_g268115 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 5.2e-08 63.2 40 80.0
Hma1.2p1_2907F.1_g330145 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 5.2e-08 63.2 40 80.0
SEGI_04192 Sequoiadendron giganteum HOM05D002112 ORTHO05D384887 2.2e-06 57.8 60 51.7


User provided reference genes

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