Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 1.6e-155 552.7 287 100.0
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 9.7e-153 543.5 287 98.3
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.3e-152 543.1 287 96.9
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 2.8e-152 542.0 287 97.9
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 1.0e-149 533.5 291 96.9
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 1.7e-149 532.7 296 93.9
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 2.7e-147 525.4 289 95.2
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.2e-145 520.0 296 93.2
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 1.7e-144 516.2 287 90.9
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 1.7e-144 516.2 287 90.9
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 2.2e-144 515.8 273 94.5
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 2.8e-144 515.4 273 93.0
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 2.8e-144 515.4 272 94.1
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.7e-144 515.0 287 90.6
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 4.8e-144 514.6 273 94.1
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 8.3e-144 513.8 298 91.3
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 8.3e-144 513.8 287 90.6
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 3.1e-143 511.9 289 90.0
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 4.1e-143 511.5 291 92.4
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 7.0e-143 510.8 287 87.8
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 1.6e-142 509.6 293 91.5
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.6e-142 509.6 275 92.7
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 2.7e-142 508.8 273 92.7
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.7e-142 508.8 296 88.9
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 3.5e-142 508.4 273 93.0
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 4.5e-142 508.1 273 93.8
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.3e-141 506.5 274 93.4
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 1.7e-141 506.1 273 92.3
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 2.3e-141 505.8 287 89.2
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 2.9e-141 505.4 290 91.4
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 8.6e-141 503.8 275 92.4
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 8.6e-141 503.8 293 90.4
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 8.6e-141 503.8 296 89.2
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 8.6e-141 503.8 287 88.5
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.1e-140 503.4 298 89.6
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.3e-140 501.9 299 87.6
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 3.3e-140 501.9 273 92.3
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.2e-139 500.0 287 86.8
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 1.6e-139 499.6 273 90.8
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 1.6e-139 499.6 273 90.8
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 6.1e-139 497.7 287 87.5
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 1.8e-138 496.1 272 92.3
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 2.3e-138 495.7 273 89.7
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.0e-138 495.4 317 84.5
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 5.2e-138 494.6 273 89.4
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.2e-137 493.4 322 83.2
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 5.7e-137 491.1 292 86.0
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.7e-136 489.6 288 85.1
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.7e-136 489.6 287 85.4
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 4.9e-136 488.0 286 85.0
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 4.9e-136 488.0 274 88.3
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 1.4e-135 486.5 287 87.1
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 1.4e-135 486.5 297 87.2
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 1.8e-135 486.1 267 89.9
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 5.4e-135 484.6 287 86.8
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 5.4e-135 484.6 288 84.7
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 1.6e-134 483.0 330 76.7
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 3.5e-134 481.9 274 86.9
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.5e-134 481.5 287 87.1
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.8e-133 478.4 296 87.5
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 3.8e-133 478.4 285 83.2
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 5.0e-133 478.0 287 84.0
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 1.5e-132 476.5 285 82.8
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 2.5e-132 475.7 290 84.8
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 3.3e-132 475.3 287 83.6
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 4.3e-132 474.9 289 82.7
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.2e-131 473.4 293 84.3
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 2.1e-131 472.6 273 86.8
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 2.1e-131 472.6 299 84.3
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 3.6e-131 471.9 293 80.9
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 6.1e-131 471.1 291 85.2
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 6.1e-131 471.1 291 85.6
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 4.0e-130 468.4 291 84.5
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 4.0e-130 468.4 291 84.5
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 4.0e-130 468.4 292 83.9
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 1.2e-129 466.8 273 82.4
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 3.4e-129 465.3 292 84.2
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 3.4e-129 465.3 297 82.8
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 4.4e-129 464.9 287 82.2
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 5.8e-129 464.5 289 82.0
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 2.2e-128 462.6 273 83.5
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 4.9e-128 461.5 320 77.2
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 4.9e-128 461.5 306 78.4
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 4.9e-128 461.5 287 84.0
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 6.4e-128 461.1 334 77.2
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 1.9e-127 459.5 258 88.4
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 2.4e-127 459.1 273 83.9
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.6e-126 456.4 288 79.5
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 2.0e-126 456.1 296 80.4
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 2.0e-126 456.1 290 83.1
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 3.5e-126 455.3 310 75.8
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 4.6e-126 454.9 287 78.4
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 6.0e-126 454.5 282 82.6
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 7.8e-126 454.1 289 78.2
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 1.7e-125 453.0 310 78.4
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 3.9e-125 451.8 282 83.0
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 6.6e-125 451.1 324 77.2
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.5e-124 449.9 273 83.5
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.5e-124 449.9 273 83.5
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 5.6e-124 448.0 309 74.4
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.5e-121 437.6 264 78.0
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 6.4e-120 434.5 291 73.9
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 3.2e-119 432.2 296 81.1
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 4.1e-119 431.8 276 77.2
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 9.2e-119 430.6 276 77.2
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.7e-117 426.4 287 73.9
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 3.0e-117 425.6 222 95.9
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 4.7e-115 418.3 233 90.1
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 2.7e-110 402.5 224 88.4
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.8e-106 389.8 264 72.3
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 3.5e-102 375.6 291 72.2
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 6.0e-102 374.8 293 71.7
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 2.3e-101 372.9 273 72.5
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 6.6e-101 371.3 240 77.9
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 8.7e-101 370.9 290 70.7
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.4e-98 362.8 205 88.3
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 2.1e-94 349.7 226 83.2
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.6e-94 348.6 239 71.1
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 4.3e-92 342.0 280 63.2
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 9.6e-92 340.9 286 62.9
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 4.8e-91 338.6 278 62.2
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 5.8e-89 331.6 200 85.5
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 9.9e-89 330.9 246 68.7
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 2.4e-87 326.2 293 59.4
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 7.9e-86 321.2 267 64.0
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 1.8e-85 320.1 181 89.0
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 6.7e-85 318.2 190 84.2
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.4e-81 305.8 202 71.8
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 1.6e-75 287.0 255 59.2
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 2.1e-75 286.6 181 79.0
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 4.2e-71 272.3 246 64.6
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 1.2e-70 270.8 190 71.6
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 6.3e-67 258.5 147 89.1
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 5.3e-50 202.2 110 90.0
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.0e-48 198.0 110 92.7
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 2.2e-48 196.8 116 87.1
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 3.2e-47 193.0 118 79.7
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 2.8e-43 179.9 109 80.7
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 5.9e-41 172.2 104 80.8
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 1.0e-40 171.4 137 74.5
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.5e-39 166.8 260 39.2
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.5e-39 165.6 95 95.8
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 1.5e-36 157.5 94 81.9
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 2.7e-33 146.7 104 80.8
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 5.9e-33 145.6 94 77.7
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 1.0e-32 144.8 268 33.6
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 9.4e-31 138.3 232 40.5
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 3.6e-30 136.3 118 64.4
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 3.6e-30 136.3 118 64.4
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 6.1e-30 135.6 118 65.3
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 8.0e-30 135.2 186 44.6
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 1.0e-29 134.8 105 70.5
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 3.0e-29 133.3 258 34.5
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 5.2e-29 132.5 118 62.7
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 6.8e-29 132.1 118 63.6
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 7.5e-28 128.6 118 62.7
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 9.8e-28 128.3 66 92.4
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 2.2e-27 127.1 118 61.9
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 2.8e-27 126.7 247 33.6
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 1.1e-23 114.8 155 42.6
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 1.5e-23 114.4 87 67.8
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 1.6e-22 110.9 155 42.6
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 3.0e-21 106.7 83 67.5
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.7e-17 93.6 59 83.1
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 2.1e-14 84.0 46 80.4
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 8.9e-13 78.6 43 86.0


User provided reference genes

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