Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 0.0e+00 1159.1 604 100.0
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 2.9e-311 1071.2 604 91.4
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 1.3e-300 1035.8 604 87.6
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 6.1e-298 1026.9 599 87.3
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 6.2e-274 947.2 607 80.1
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 3.4e-272 941.4 611 79.7
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 1.9e-270 935.6 611 79.1
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 1.2e-269 932.9 604 79.8
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 1.7e-268 929.1 604 79.5
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.6e-266 922.5 601 79.7
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 8.1e-266 920.2 609 77.2
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 2.6e-264 915.2 605 76.9
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 3.1e-257 891.7 606 74.4
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.4e-230 803.1 600 66.8
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.3e-228 795.8 608 65.8
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 2.1e-226 789.3 608 65.8
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 1.4e-225 786.6 605 65.3
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 2.4e-225 785.8 599 65.6
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 6.9e-225 784.3 597 64.8
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 1.5e-224 783.1 604 65.4
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 1.3e-223 780.0 604 64.9
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 6.5e-223 777.7 601 64.2
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 1.4e-222 776.5 603 65.3
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 3.2e-222 775.4 599 65.1
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.6e-221 773.1 599 63.9
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 2.1e-221 772.7 608 69.1
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 2.1e-221 772.7 600 64.5
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 2.7e-221 772.3 599 64.3
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 6.0e-221 771.2 599 64.8
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 6.7e-220 767.7 606 63.4
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 1.1e-219 766.9 604 64.4
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 1.5e-219 766.5 604 64.7
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 1.9e-219 766.1 606 64.2
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 5.7e-219 764.6 604 63.7
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 3.7e-218 761.9 608 63.0
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.1e-217 760.4 606 62.5
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.1e-217 760.4 579 66.0
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 2.4e-217 759.2 603 63.7
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 3.1e-217 758.8 603 62.9
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 5.3e-217 758.1 611 62.2
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 1.2e-216 756.9 604 62.9
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 2.9e-215 752.3 603 62.9
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 1.9e-214 749.6 601 61.9
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 2.5e-214 749.2 607 61.6
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 7.2e-214 747.7 598 62.5
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 6.1e-213 744.6 607 63.4
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 6.1e-213 744.6 606 61.6
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 1.0e-212 743.8 602 62.5
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 3.0e-212 742.3 619 61.1
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 6.7e-212 741.1 603 61.5
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 3.7e-210 735.3 605 61.3
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 4.8e-210 734.9 608 61.5
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 4.8e-210 734.9 609 62.2
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 6.3e-210 734.6 598 61.9
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 1.1e-209 733.8 620 60.2
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.8e-209 733.0 598 61.9
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 4.1e-209 731.9 598 61.9
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 4.1e-209 731.9 629 60.1
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.5e-208 729.9 603 59.9
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 2.0e-208 729.6 599 62.4
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 2.6e-208 729.2 604 62.6
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 4.5e-208 728.4 614 59.3
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 1.0e-207 727.2 607 61.9
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 1.0e-207 727.2 603 60.2
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 2.9e-207 725.7 599 61.8
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.9e-207 725.7 601 61.6
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 5.0e-207 724.9 600 60.2
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 8.5e-207 724.2 590 62.5
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 8.5e-207 724.2 609 60.9
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 1.1e-206 723.8 602 60.0
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 4.2e-206 721.8 636 58.2
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.6e-205 718.8 600 59.7
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 3.9e-204 715.3 599 59.3
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 8.8e-204 714.1 603 59.9
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 8.8e-204 714.1 608 60.0
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 1.1e-203 713.8 608 59.7
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 1.5e-203 713.4 609 60.3
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 2.6e-203 712.6 604 59.9
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 5.7e-203 711.4 603 58.5
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 2.8e-202 709.1 605 60.2
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 6.3e-202 708.0 605 59.8
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.5e-200 703.4 585 60.3
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 2.0e-200 703.0 600 57.2
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 2.9e-199 699.1 610 59.5
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 2.9e-199 699.1 603 59.9
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 3.8e-199 698.7 575 61.2
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 5.0e-199 698.4 607 60.0
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 8.5e-199 697.6 601 60.2
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 1.4e-198 696.8 610 59.3
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 3.2e-198 695.7 603 59.4
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 3.2e-198 695.7 601 60.1
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 5.5e-198 694.9 601 58.4
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 1.6e-197 693.3 602 58.5
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 1.6e-197 693.3 584 61.0
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 3.6e-197 692.2 470 75.7
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 3.6e-197 692.2 616 58.0
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 1.0e-196 690.6 606 58.1
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 1.8e-196 689.9 599 58.1
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 1.1e-195 687.2 605 60.3
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 2.8e-194 682.6 611 57.8
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 6.3e-194 681.4 606 58.3
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 1.1e-193 680.6 541 62.8
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 1.0e-191 674.1 559 61.2
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.8e-191 672.2 606 58.9
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 4.2e-190 668.7 606 58.7
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 4.2e-190 668.7 606 58.7
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 7.2e-190 667.9 611 56.1
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.6e-189 666.8 606 58.4
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.0e-188 664.1 606 58.4
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 4.8e-186 655.2 619 56.1
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 5.3e-185 651.7 601 55.6
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 5.3e-185 651.7 599 56.8
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 9.1e-185 651.0 594 58.6
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 5.2e-180 635.2 606 55.9
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 8.8e-180 634.4 603 54.2
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 1.5e-179 633.6 523 61.4
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 3.4e-179 632.5 599 56.6
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 5.5e-174 615.1 585 55.0
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 3.6e-173 612.5 601 53.2
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 6.8e-156 555.1 590 49.8
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.9e-153 547.0 607 47.9
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 6.0e-152 542.0 518 59.7
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 3.9e-151 539.3 634 46.4
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 8.6e-151 538.1 358 79.6
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 6.2e-149 531.9 606 49.3
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 6.0e-136 488.8 602 44.9
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.4e-132 477.6 443 55.8
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 2.4e-129 466.8 600 45.8
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 4.2e-121 439.5 395 58.5
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 2.0e-115 420.6 323 65.9
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 4.5e-115 419.5 626 40.6
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 2.1e-112 410.6 457 46.4
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.1e-108 396.7 319 62.1
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 1.2e-96 358.2 462 43.5
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.8e-90 336.7 356 51.1
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 1.2e-83 315.1 267 59.6
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 2.9e-82 310.5 198 75.3
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 3.1e-76 290.4 602 32.7
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 3.8e-66 256.9 630 31.1
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 4.2e-65 253.4 183 69.9
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 1.6e-59 235.0 227 54.6
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 3.6e-56 223.8 162 66.0
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 6.3e-53 213.0 137 70.1
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 6.8e-47 193.0 183 61.2
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 4.1e-44 183.7 373 35.7
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 1.3e-34 152.1 130 60.0
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 2.3e-34 151.4 181 55.2
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.5e-33 148.7 118 64.4
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 5.8e-30 136.7 133 57.9
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 9.9e-30 136.0 97 68.0
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.7e-29 135.2 93 68.8
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 4.9e-29 133.7 93 67.7
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.6e-27 128.6 113 60.2
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 2.1e-27 128.3 113 59.3
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 9.6e-25 119.4 76 67.1
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 4.7e-24 117.1 192 41.7
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 6.4e-21 106.7 82 64.6
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 7.1e-20 103.2 56 87.5
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 1.2e-19 102.4 114 50.9
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 1.0e-18 99.4 130 45.4
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 4.3e-17 94.0 145 43.4
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 1.5e-14 85.5 107 51.4
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 3.8e-13 80.9 65 63.1
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 3.3e-09 67.8 34 91.2
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 5.8e-06 57.0 34 79.4
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 9.9e-06 56.2 41 61.0


User provided reference genes

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