Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 2.5e-184 648.7 330 100.0
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 7.5e-173 610.5 330 93.6
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 5.0e-153 544.7 328 84.8
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 1.1e-142 510.4 330 80.9
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 2.9e-132 475.7 331 76.1
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 4.9e-132 474.9 331 75.8
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 4.9e-132 474.9 331 75.8
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 6.6e-129 464.5 331 72.5
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 1.1e-128 463.8 331 72.8
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 8.1e-127 457.6 327 74.0
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 1.2e-117 427.2 343 70.0
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 3.0e-113 412.5 336 63.4
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 4.5e-109 398.7 335 63.3
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 2.9e-108 396.0 335 65.4
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 1.3e-105 387.1 338 61.5
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 1.8e-105 386.7 327 64.8
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 1.1e-104 384.0 332 62.0
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 4.3e-104 382.1 334 60.8
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 7.4e-104 381.3 332 63.9
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 1.1e-102 377.5 334 60.5
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 1.4e-102 377.1 338 62.4
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 2.6e-101 372.9 260 74.2
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 4.9e-100 368.6 331 57.4
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 5.5e-99 365.2 335 55.5
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 2.1e-98 363.2 321 61.4
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 5.1e-97 358.6 333 56.8
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 8.7e-97 357.8 360 55.0
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 4.3e-96 355.5 339 57.5
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 9.6e-96 354.4 337 55.5
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 1.6e-95 353.6 332 56.0
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 2.8e-95 352.8 330 55.8
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 2.8e-95 352.8 338 57.1
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 1.5e-93 347.1 327 55.4
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 2.0e-93 346.7 327 53.5
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 2.6e-93 346.3 331 55.9
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 4.5e-93 345.5 335 57.3
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 5.0e-92 342.0 347 55.6
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 6.5e-92 341.7 336 55.7
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 3.2e-91 339.3 336 53.9
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 7.1e-91 338.2 337 54.6
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 3.9e-89 332.4 336 54.2
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 1.5e-88 330.5 336 54.2
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 4.3e-88 328.9 333 53.5
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 9.7e-88 327.8 328 56.4
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 2.2e-87 326.6 334 55.4
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 3.7e-87 325.9 343 51.9
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 6.3e-87 325.1 322 52.5
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 6.3e-87 325.1 334 54.8
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 4.1e-86 322.4 331 54.7
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 9.0e-86 321.2 333 54.4
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 9.0e-86 321.2 333 54.7
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 2.0e-85 320.1 384 49.5
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 3.4e-85 319.3 333 54.4
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 7.7e-85 318.2 333 54.1
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 2.2e-84 316.6 334 51.5
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 3.8e-84 315.8 333 53.5
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 6.5e-84 315.1 365 50.1
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 1.1e-83 314.3 343 50.4
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 1.1e-83 314.3 331 54.4
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 1.4e-83 313.9 327 52.9
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 1.6e-82 310.5 329 55.0
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 2.7e-82 309.7 335 52.2
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 6.3e-79 298.5 357 49.9
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 3.4e-77 292.7 275 57.8
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 5.9e-77 292.0 334 49.7
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 1.0e-76 291.2 325 48.9
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 2.2e-76 290.0 329 48.6
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 4.2e-75 285.8 335 49.3
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 4.2e-75 285.8 316 49.4
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 1.6e-74 283.9 310 51.3
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 2.7e-74 283.1 329 49.2
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 2.2e-71 273.5 343 47.5
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 5.3e-70 268.9 349 47.0
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 1.2e-69 267.7 313 48.2
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 1.3e-68 264.2 337 46.6
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 5.0e-68 262.3 351 44.7
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 8.5e-68 261.5 302 51.7
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 1.1e-67 261.2 195 65.6
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 1.1e-67 261.2 327 48.9
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 1.5e-67 260.8 345 47.5
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 2.5e-67 260.0 329 49.2
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 2.5e-67 260.0 353 44.8
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 7.2e-67 258.5 302 50.7
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 9.4e-67 258.1 327 48.9
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 9.4e-67 258.1 327 48.9
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 3.6e-66 256.1 350 44.9
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 6.1e-66 255.4 328 48.5
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 6.7e-65 251.9 327 48.0
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 3.3e-64 249.6 330 48.2
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 4.4e-64 249.2 327 47.7
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 4.8e-63 245.7 264 47.3
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 6.3e-63 245.4 308 44.8
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 1.8e-62 243.8 328 47.0
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 7.0e-62 241.9 328 46.3
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 2.0e-61 240.4 269 49.1
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 3.5e-61 239.6 213 57.7
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 3.5e-61 239.6 276 50.0
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 5.9e-61 238.8 352 44.6
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 2.2e-60 236.9 274 47.8
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 3.8e-60 236.1 328 46.0
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 3.8e-60 236.1 225 55.1
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 1.1e-59 234.6 298 45.0
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 1.0e-57 228.0 338 42.6
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 1.3e-55 221.1 231 54.5
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 2.7e-53 213.4 263 49.8
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 1.2e-48 198.0 208 51.0
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 1.7e-47 194.1 222 50.9
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 1.7e-47 194.1 195 55.9
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 1.4e-46 191.0 197 51.3
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 7.7e-45 185.3 191 49.7
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 1.2e-42 177.9 207 46.4
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 3.6e-42 176.4 200 46.0
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.0e-41 173.3 204 46.6
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 4.0e-41 172.9 202 45.5
SEGI_10576 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 1.3e-39 167.9 149 56.4
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.1e-38 162.9 202 45.0
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.6e-37 159.5 202 44.6
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 7.3e-35 152.1 199 41.7
MD12G1209000 Malus domestica HOM05D006444 ORTHO05D007748 1.0e-33 148.3 135 56.3
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 1.7e-31 141.0 120 57.5
FAN09G3591 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.6e-29 134.4 143 53.8
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 1.7e-23 114.4 179 39.1
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 1.4e-17 94.7 80 63.8
Actinidia35535 Actinidia chinensis HOM05D006444 ORTHO05D007748 5.2e-17 92.8 85 62.4
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 7.8e-13 79.0 212 30.2
Cre01.g021850 Chlamydomonas reinhardtii HOM05D005236 ORTHO05D006557 8.1e-10 68.9 165 31.5
SEGI_25648 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 1.9e-06 57.8 70 51.4


User provided reference genes

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