Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 9.3e-46 186.8 115 100.0
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 6.2e-42 174.1 115 93.0
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 5.3e-41 171.0 114 93.0
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 2.6e-40 168.7 115 74.8
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 3.4e-40 168.3 115 90.4
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 4.9e-39 164.5 115 88.7
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 1.1e-38 163.3 115 72.2
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 2.7e-37 158.7 115 74.8
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 9.6e-35 150.2 110 80.0
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 2.8e-34 148.7 110 80.0
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 6.2e-34 147.5 112 70.5
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 6.2e-34 147.5 112 74.1
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 1.1e-33 146.7 112 79.5
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 2.0e-32 142.5 112 82.1
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 2.6e-32 142.1 110 82.7
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 1.3e-31 139.8 110 76.4
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 4.9e-31 137.9 106 82.1
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 6.5e-31 137.5 112 73.2
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.4e-30 136.3 114 76.3
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 1.9e-30 136.0 108 81.5
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.5e-30 135.6 112 76.8
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 3.2e-30 135.2 112 78.6
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 3.2e-30 135.2 112 78.6
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 4.2e-30 134.8 110 79.1
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 4.2e-30 134.8 112 79.5
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 4.2e-30 134.8 112 76.8
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 7.1e-30 134.0 112 79.5
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 7.1e-30 134.0 111 61.3
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 9.3e-30 133.7 112 77.7
Cc11_g16850 Coffea canephora HOM05D005515 ORTHO05D006620 2.7e-29 132.1 112 75.0
Gohir.D07G235400 Gossypium hirsutum HOM05D005515 ORTHO05D006620 2.7e-29 132.1 112 77.7
Manes.15G160700 Manihot esculenta HOM05D005515 ORTHO05D006620 2.7e-29 132.1 110 78.2
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 2.7e-29 132.1 115 76.5
Atru.chr6.2567 Acer truncatum HOM05D005515 ORTHO05D006620 7.9e-29 130.6 114 75.4
TAR622G0361 Trochodendron aralioides HOM05D005515 ORTHO05D006620 7.9e-29 130.6 112 77.7
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.0e-28 130.2 112 72.3
Gorai.001G271200 Gossypium raimondii HOM05D005515 ORTHO05D006620 1.0e-28 130.2 112 77.7
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 1.0e-28 130.2 109 71.6
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 1.3e-28 129.8 115 75.7
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 1.8e-28 129.4 108 63.9
Dinv10962 Davidia involucrata HOM05D000504 ORTHO05D006620 1.8e-28 129.4 110 77.3
Oeu041666.1 Olea europaea HOM05D005515 ORTHO05D006620 2.3e-28 129.0 112 75.0
SEGI_35944 Sequoiadendron giganteum HOM05D005515 ORTHO05D006620 3.9e-28 128.3 114 74.6
Gohir.A07G228200 Gossypium hirsutum HOM05D005515 ORTHO05D006620 5.1e-28 127.9 112 76.8
Atru.chr11.2315 Acer truncatum HOM05D005515 ORTHO05D006620 6.7e-28 127.5 109 74.3
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 6.7e-28 127.5 110 64.5
Lsat_1_v5_gn_8_147620 Lactuca sativa HOM05D005515 ORTHO05D006620 6.7e-28 127.5 112 71.4
Nitab4.5_0003376g0030 Nicotiana tabacum HOM05D005515 ORTHO05D006620 6.7e-28 127.5 110 78.2
Nitab4.5_0008640g0020 Nicotiana tabacum HOM05D005515 ORTHO05D006620 6.7e-28 127.5 110 78.2
TWI36G0725 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 8.7e-28 127.1 114 75.4
Gohir.D04G077100 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.5e-27 126.3 112 75.9
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 1.9e-27 125.9 110 61.8
Peaxi162Scf00881g00228 Petunia axillaris HOM05D005515 ORTHO05D006620 2.5e-27 125.6 110 75.5
Gorai.012G087000 Gossypium raimondii HOM05D005515 ORTHO05D006620 3.3e-27 125.2 112 75.0
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 9.6e-27 123.6 112 59.8
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 1.3e-26 123.2 113 72.6
Thecc.04G035700 Theobroma cacao HOM05D005515 ORTHO05D006620 1.3e-26 123.2 112 75.0
CAN.G1300.5 Capsicum annuum HOM05D005515 ORTHO05D006620 1.6e-26 122.9 110 76.4
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 2.1e-26 122.5 107 65.4
arahy.Tifrunner.gnm1.ann1.W7YL8X Arachis hypogaea HOM05D005515 ORTHO05D006620 2.1e-26 122.5 113 74.3
arahy.Tifrunner.gnm1.ann1.Y4DWZG Arachis hypogaea HOM05D005515 ORTHO05D006620 2.1e-26 122.5 113 74.3
Duzib147G1212 Durio zibethinus HOM05D005515 ORTHO05D006620 2.1e-26 122.5 112 72.3
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 2.8e-26 122.1 112 68.8
PSO063G5856 Papaver somniferum HOM05D005515 ORTHO05D006620 4.8e-26 121.3 112 72.3
PSO782G3173 Papaver somniferum HOM05D005515 ORTHO05D006620 4.8e-26 121.3 112 72.3
Mapoly0005s0063 Marchantia polymorpha HOM05D005515 ORTHO05D006620 6.3e-26 120.9 112 72.3
Solyc02g068110.4 Solanum lycopersicum HOM05D005515 ORTHO05D006620 6.3e-26 120.9 110 73.6
Duzib264G0697 Durio zibethinus HOM05D005515 ORTHO05D006620 1.1e-25 120.2 112 72.3
Pp3c4_1860 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.1e-25 120.2 108 73.1
AL5G16230 Arabidopsis lyrata HOM05D005515 ORTHO05D006620 4.1e-25 118.2 115 70.4
Duzib187G1157 Durio zibethinus HOM05D005515 ORTHO05D006620 4.1e-25 118.2 112 73.2
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 4.1e-25 118.2 110 70.9
Pp3c12_14240 Physcomitrium patens HOM05D005515 ORTHO05D006620 5.3e-25 117.9 108 71.3
ATR1098G146 Amborella trichopoda HOM05D005515 ORTHO05D006620 6.9e-25 117.5 123 65.9
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 1.2e-24 116.7 108 54.6
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 1.5e-24 116.3 114 57.9
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.5e-24 116.3 110 59.1
Manes.12G012000 Manihot esculenta HOM05D005515 ORTHO05D006620 2.6e-24 115.5 111 71.2
MSTRG.15568 Avicennia marina HOM05D005515 ORTHO05D006620 7.6e-24 114.0 116 67.2
CARHR148320 Cardamine hirsuta HOM05D005515 ORTHO05D006620 2.9e-23 112.1 114 63.2
PGR102G1194 Punica granatum HOM05D005515 ORTHO05D006620 3.8e-23 111.7 112 66.1
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 8.4e-23 110.5 103 57.3
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.1e-22 110.2 92 65.2
THA.LOC104823981 Tarenaya hassleriana HOM05D005515 ORTHO05D006620 1.2e-21 106.7 112 67.0
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 2.1e-21 105.9 112 53.6
Sabra16G0211700 Salix brachista HOM05D005515 ORTHO05D006620 2.1e-21 105.9 204 44.6
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 6.1e-21 104.4 113 52.2
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 1.1e-19 100.1 88 63.6
SMO367G0376 Selaginella moellendorffii HOM05D005515 ORTHO05D006620 1.1e-19 100.1 109 61.5
unitig_8.g2909 Utricularia gibba HOM05D005515 ORTHO05D006620 3.3e-19 98.6 112 66.1
FAN14G0031 Fragaria x ananassa HOM05D005515 ORTHO05D006620 5.7e-19 97.8 87 69.0
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 5.7e-19 97.8 87 59.8
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 5.7e-19 97.8 132 47.7
Carub.0005s0534 Capsella rubella HOM05D005515 ORTHO05D006620 9.7e-19 97.1 115 62.6
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 2.2e-18 95.9 86 61.6
Ciclev10033394m.g Citrus clementina HOM05D005515 ORTHO05D006620 2.8e-18 95.5 87 72.4
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 2.8e-18 95.5 83 69.9
Cfa009365 Carpinus fangiana HOM05D000048 ORTHO05D000445 3.7e-18 95.1 113 61.1
MSTRG.7999 Avicennia marina HOM05D005515 ORTHO05D006620 4.8e-18 94.7 110 61.8
Sopen02g017220 Solanum pennellii HOM05D005515 ORTHO05D006620 6.3e-18 94.4 88 56.8
Cpa.g.sc43.50 Carica papaya HOM05D005515 ORTHO05D006620 8.2e-18 94.0 85 74.1
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 2.4e-17 92.4 86 59.3
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 4.1e-17 91.7 84 65.5
Sabra17G0064300 Salix brachista HOM05D005515 ORTHO05D006620 5.3e-17 91.3 104 60.6
AT3G27100 Arabidopsis thaliana HOM05D005515 ORTHO05D006620 6.9e-17 90.9 115 60.0
Haze_12412 Corylus avellana HOM05D000048 ORTHO05D000445 9.0e-17 90.5 115 48.7
BcaC04g23917 Brassica carinata HOM05D005515 ORTHO05D006620 2.0e-16 89.4 114 61.4
A09p03280 Brassica napus HOM05D005515 ORTHO05D006620 2.0e-16 89.4 114 62.3
BolC9t53269H Brassica oleracea HOM05D005515 ORTHO05D006620 2.0e-16 89.4 114 61.4
PGSC0003DMG401006926 Solanum tuberosum HOM05D005515 ORTHO05D006620 2.6e-16 89.0 90 70.0
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 4.5e-16 88.2 84 53.6
HanXRQChr12g0385431 Helianthus annuus HOM05D005515 ORTHO05D006620 4.5e-16 88.2 56 75.0
BolC7t44132H Brassica oleracea HOM05D005515 ORTHO05D006620 1.3e-15 86.7 110 56.4
Thhalv10005161m.g Eutrema salsugineum HOM05D005515 ORTHO05D006620 1.7e-15 86.3 112 58.9
Sp2g16230 Schrenkiella parvula HOM05D005515 ORTHO05D006620 1.7e-15 86.3 112 59.8
Nn3g16471 Nelumbo nucifera HOM05D005515 ORTHO05D006620 5.0e-15 84.7 89 68.5
SalBow2G3427 Salvia bowleyana HOM05D005515 ORTHO05D006620 1.1e-14 83.6 86 51.2
SalBow7G1491 Salvia bowleyana HOM05D005515 ORTHO05D006620 1.4e-14 83.2 111 48.6
Ah.02g120510 Amaranthus hybridus HOM05D005515 ORTHO05D006620 5.5e-14 81.3 73 54.8
Aa31LG2G5500 Aethionema arabicum HOM05D005515 ORTHO05D006620 1.2e-13 80.1 114 55.3
SGA_v2.0_scaffold154G37170 Striga asiatica HOM05D005515 ORTHO05D006620 1.6e-13 79.7 104 61.5
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 6.1e-13 77.8 88 50.0
CDE02G3365 Ceratophyllum demersum HOM05D005515 ORTHO05D006620 2.3e-12 75.9 83 67.5
Gohir.D05G311500 Gossypium hirsutum HOM05D005515 ORTHO05D006620 3.9e-12 75.1 89 49.4
BraA06t27074Z Brassica rapa HOM05D005515 ORTHO05D006620 5.1e-12 74.7 113 54.9
MCO13G114 Micromonas commoda HOM05D005515 ORTHO05D006620 5.7e-11 71.2 87 60.9
A06p41490 Brassica napus HOM05D005515 ORTHO05D006620 7.4e-11 70.9 116 56.9
C07p36160 Brassica napus HOM05D005515 ORTHO05D006620 9.7e-11 70.5 111 54.1
Actinidia30652 Actinidia chinensis HOM05D005515 ORTHO05D006620 1.4e-09 66.6 60 56.7
COL.COLO4_20393 Corchorus olitorius HOM05D005515 ORTHO05D006620 5.3e-09 64.7 57 57.9
BcaB04g19426 Brassica carinata HOM05D005515 ORTHO05D006620 1.2e-08 63.5 82 53.7
BraA09t35966Z Brassica rapa HOM05D005515 ORTHO05D006620 4.5e-08 61.6 89 60.7
Oeu006531.1 Olea europaea HOM05D005515 ORTHO05D006620 5.9e-08 61.2 61 52.5
CSS0003202 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 1.0e-07 60.5 51 60.8
CSS0037049 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 1.0e-07 60.5 51 60.8
Cre08.g370300 Chlamydomonas reinhardtii HOM05D005515 ORTHO05D006620 1.7e-07 59.7 89 34.8
PRCOL_00000741 Prasinoderma coloniale HOM05D005515 ORTHO05D006620 1.9e-06 56.2 89 32.6
Haze_27757 Corylus avellana HOM05D005515 ORTHO05D006620 5.5e-06 54.7 88 34.1


User provided reference genes

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