Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 3.5e-103 378.3 187 100.0
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 2.5e-101 372.1 183 100.0
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 5.3e-91 337.8 187 91.4
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 9.0e-91 337.0 182 90.7
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 3.4e-90 335.1 182 90.1
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.4e-88 329.7 182 89.0
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 3.5e-87 325.1 182 87.4
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 1.3e-76 290.0 177 78.5
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 1.5e-74 283.1 182 72.5
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.2e-73 279.3 185 73.0
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 2.9e-73 278.9 182 70.9
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 8.5e-73 277.3 187 71.7
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 8.5e-73 277.3 187 71.7
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 8.5e-73 277.3 187 71.7
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 8.5e-73 277.3 187 70.6
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 1.1e-72 276.9 187 72.2
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 1.4e-72 276.6 187 71.7
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.4e-72 276.6 187 71.1
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.4e-72 276.6 187 71.1
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 1.9e-72 276.2 187 72.2
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.9e-72 276.2 187 70.6
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 1.9e-72 276.2 187 69.5
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 1.9e-72 276.2 187 71.1
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 1.9e-72 276.2 187 72.2
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 2.5e-72 275.8 185 71.9
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.5e-72 275.8 187 71.1
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 2.5e-72 275.8 178 71.9
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.2e-72 275.4 187 70.6
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 4.2e-72 275.0 187 71.1
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 5.5e-72 274.6 187 71.7
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 5.5e-72 274.6 187 71.7
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 5.5e-72 274.6 187 71.1
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 5.5e-72 274.6 182 72.0
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 9.4e-72 273.9 187 70.6
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 9.4e-72 273.9 187 70.1
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.2e-71 273.5 187 71.1
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 2.1e-71 272.7 187 70.6
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.6e-71 271.9 187 70.6
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.6e-71 271.9 182 70.3
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 3.6e-71 271.9 181 71.8
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 3.6e-71 271.9 187 70.6
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 6.1e-71 271.2 187 71.7
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 1.0e-70 270.4 187 69.5
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.4e-70 270.0 185 70.8
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.4e-70 270.0 187 69.5
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.4e-70 270.0 187 69.5
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.4e-70 270.0 185 70.8
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 1.4e-70 270.0 185 70.8
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.8e-70 269.6 185 70.8
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 2.3e-70 269.2 182 70.3
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 3.0e-70 268.9 187 69.5
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 3.0e-70 268.9 180 70.6
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 3.0e-70 268.9 187 70.6
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 3.9e-70 268.5 180 71.7
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.9e-70 268.5 180 71.7
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 3.9e-70 268.5 187 67.4
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 6.7e-70 267.7 187 70.6
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 8.8e-70 267.3 187 69.0
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 8.8e-70 267.3 182 69.8
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 2.0e-69 266.2 180 68.9
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.0e-69 266.2 183 71.0
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.6e-69 265.8 187 68.4
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.6e-69 265.8 187 68.4
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 2.6e-69 265.8 182 69.8
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.6e-69 265.8 187 67.9
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 3.3e-69 265.4 184 69.0
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 7.4e-69 264.2 187 69.0
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 1.7e-68 263.1 185 68.1
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.7e-68 263.1 185 68.1
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.7e-68 263.1 187 67.9
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 2.2e-68 262.7 187 70.1
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 3.7e-68 261.9 187 68.4
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 3.7e-68 261.9 187 69.5
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 3.7e-68 261.9 184 69.0
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 4.8e-68 261.5 185 66.5
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 4.8e-68 261.5 185 68.1
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 6.3e-68 261.2 182 68.7
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.1e-67 260.4 182 68.1
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.4e-67 260.0 187 66.3
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 1.4e-67 260.0 185 68.1
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 1.8e-67 259.6 180 68.9
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 1.8e-67 259.6 180 68.9
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 1.8e-67 259.6 180 68.9
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 1.8e-67 259.6 187 68.4
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 1.8e-67 259.6 185 68.1
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 2.4e-67 259.2 183 67.2
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 2.4e-67 259.2 182 69.2
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 4.1e-67 258.5 185 68.1
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 4.1e-67 258.5 183 71.6
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.1e-67 258.5 187 66.3
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 4.1e-67 258.5 185 67.6
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 7.0e-67 257.7 180 67.8
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 7.0e-67 257.7 180 67.8
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 7.0e-67 257.7 187 66.8
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 7.0e-67 257.7 183 69.4
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 1.2e-66 256.9 181 66.3
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 1.2e-66 256.9 181 69.6
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.5e-66 256.5 182 66.5
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 2.0e-66 256.1 187 66.8
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 2.6e-66 255.8 180 71.1
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 2.6e-66 255.8 180 67.2
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 2.6e-66 255.8 178 69.7
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 3.5e-66 255.4 180 68.9
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 2.2e-65 252.7 183 63.4
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 6.5e-65 251.1 182 64.3
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 8.5e-65 250.8 185 63.2
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 1.9e-64 249.6 182 64.8
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 2.5e-64 249.2 191 64.9
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 3.2e-64 248.8 178 66.3
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 5.5e-64 248.1 182 64.8
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 9.4e-64 247.3 185 64.3
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 1.2e-63 246.9 187 63.1
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.1e-63 246.1 185 64.3
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 2.7e-63 245.7 187 65.8
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.7e-63 245.7 188 65.4
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 2.7e-63 245.7 183 66.1
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 6.1e-63 244.6 187 64.7
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 8.0e-63 244.2 181 63.0
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 1.4e-62 243.4 188 63.3
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 2.3e-62 242.7 183 63.4
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 2.0e-61 239.6 188 62.8
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 2.0e-61 239.6 175 65.1
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 4.4e-61 238.4 175 66.3
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 3.7e-60 235.3 182 61.5
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 4.8e-60 235.0 173 66.5
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.8e-59 233.0 180 62.8
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 7.0e-59 231.1 182 62.1
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 7.7e-58 227.6 187 60.4
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 2.2e-57 226.1 180 62.8
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.2e-53 213.8 183 60.1
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 5.9e-50 201.4 174 58.0
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 7.7e-50 201.1 182 57.7
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 2.9e-49 199.1 170 60.0
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 4.7e-47 191.8 190 55.3
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 7.7e-42 174.5 120 69.2
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 1.0e-41 174.1 197 50.8
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.8e-39 166.0 117 65.0
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 1.3e-33 147.1 156 49.4
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 3.9e-33 145.6 180 40.0
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 4.6e-26 122.1 133 48.9
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 5.6e-24 115.2 100 56.0
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.8e-23 112.8 73 74.0
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 1.5e-16 90.5 166 33.7
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 3.1e-14 82.8 57 70.2
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 2.4e-11 73.2 55 58.2
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 2.4e-11 73.2 55 58.2
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 2.5e-08 63.2 38 73.7


User provided reference genes

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