Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 0.0e+00 1787.7 900 100.0
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 0.0e+00 1454.5 922 80.3
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 0.0e+00 1365.5 924 76.3
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 0.0e+00 1271.5 958 69.1
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 0.0e+00 1265.8 937 71.0
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 0.0e+00 1252.3 922 70.8
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 0.0e+00 1251.1 948 68.9
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 0.0e+00 1182.5 870 70.0
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 0.0e+00 1131.3 870 67.7
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 1.4e-298 1029.6 935 58.2
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 4.0e-293 1011.5 961 57.4
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.7e-291 1006.1 974 54.9
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 3.7e-291 1005.0 696 73.3
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.6e-289 999.6 929 57.1
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 2.0e-289 999.2 995 54.6
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 3.5e-289 998.4 999 54.2
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 4.5e-289 998.0 961 55.3
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.0e-288 996.9 929 56.7
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 1.5e-287 993.0 960 56.2
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 6.1e-286 987.6 938 56.4
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.2e-284 983.4 961 54.8
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 2.6e-284 982.2 978 54.5
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 5.4e-282 974.5 899 57.8
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 2.3e-280 969.1 953 54.9
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 2.9e-280 968.8 972 54.1
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 1.0e-277 960.3 950 54.9
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 1.8e-277 959.5 1010 53.4
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 8.9e-277 957.2 954 54.9
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 1.2e-276 956.8 951 54.9
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 3.4e-276 955.3 937 55.5
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 3.2e-274 948.7 949 53.7
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 2.7e-273 945.7 954 53.2
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 4.6e-273 944.9 954 52.8
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 4.6e-273 944.9 743 64.1
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 8.6e-272 940.6 898 55.5
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 2.8e-270 935.6 1011 52.1
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 6.2e-270 934.5 926 55.3
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 2.3e-269 932.6 972 51.3
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 3.1e-269 932.2 937 54.0
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 1.5e-268 929.9 970 51.0
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 7.5e-268 927.5 994 51.5
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 2.4e-266 922.5 961 53.3
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.4e-266 921.4 961 54.1
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 9.2e-266 920.6 982 52.5
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.0e-264 917.1 976 52.5
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 8.6e-264 914.1 926 54.3
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 4.7e-262 908.3 960 52.9
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 8.1e-262 907.5 975 51.5
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 8.3e-259 897.5 987 49.8
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 1.1e-258 897.1 943 52.5
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 2.7e-257 892.5 937 51.3
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 4.6e-257 891.7 891 53.3
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 3.9e-256 888.6 936 53.4
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 1.6e-254 883.2 746 60.3
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 6.2e-254 881.3 994 49.8
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 2.3e-253 879.4 942 52.0
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.1e-253 879.0 942 51.6
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 2.0e-252 876.3 926 52.6
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 3.4e-252 875.5 994 49.7
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 2.2e-251 872.8 926 52.9
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 2.9e-251 872.5 931 50.8
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 3.7e-251 872.1 926 52.4
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 7.1e-250 867.8 987 50.2
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 1.3e-248 863.6 931 51.5
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 5.1e-248 861.7 977 50.3
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 8.6e-248 860.9 1000 49.7
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 2.1e-246 856.3 925 52.3
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 1.1e-245 854.0 923 51.2
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 2.4e-245 852.8 953 50.9
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 5.2e-245 851.7 921 50.4
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 1.2e-244 850.5 978 46.8
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 3.4e-244 849.0 686 62.2
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 7.6e-244 847.8 977 49.2
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 7.6e-244 847.8 952 50.2
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.2e-243 846.3 1008 47.8
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 6.4e-243 844.7 937 50.6
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 4.8e-230 802.0 815 54.2
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.1e-229 800.8 951 48.7
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 3.1e-229 799.3 943 47.2
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 9.3e-226 787.7 976 47.1
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 6.7e-224 781.6 752 54.1
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 2.1e-222 776.5 969 45.2
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.1e-221 774.2 988 46.7
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 3.7e-214 749.2 896 48.8
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.0e-212 743.4 949 46.3
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 2.9e-211 739.6 568 62.7
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.5e-207 727.2 526 68.1
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 4.2e-202 709.1 920 45.3
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 1.4e-200 704.1 552 63.4
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 4.2e-194 682.6 459 70.8
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 2.3e-192 676.8 962 43.0
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 7.0e-189 665.2 745 50.2
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 1.2e-183 647.9 779 47.9
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.2e-182 641.7 913 41.6
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 1.2e-180 637.9 482 66.6
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 3.2e-178 629.8 829 42.7
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 4.7e-177 625.9 1035 37.7
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 1.5e-175 620.9 359 87.5
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.8e-174 616.7 734 48.8
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 6.5e-171 605.5 825 41.6
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.2e-165 585.1 708 45.1
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 8.6e-163 578.6 315 87.0
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 4.7e-161 572.8 603 50.2
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-157 561.2 836 40.4
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-150 537.3 735 42.6
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 6.6e-139 499.2 988 35.4
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-137 494.6 911 35.5
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-133 481.9 478 50.2
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 2.7e-132 477.2 443 56.7
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 2.7e-132 477.2 443 56.7
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.0e-127 461.1 697 40.5
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 3.5e-124 450.3 279 75.3
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.0e-123 447.2 623 41.7
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 5.5e-109 399.8 402 58.2
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 3.1e-104 384.0 599 42.1
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.1e-99 366.7 834 31.9
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.9e-90 338.2 724 34.0
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.5e-90 337.8 337 53.4
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.7e-89 334.0 851 32.0
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 1.5e-87 328.6 486 44.7
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 1.0e-83 315.8 397 42.8
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 6.9e-80 303.1 466 39.9
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.4e-77 295.4 445 42.9
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 4.5e-71 273.9 652 30.5
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 1.3e-65 255.8 159 71.7
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 3.7e-65 254.2 169 78.7
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 1.1e-61 242.7 390 41.3
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 2.5e-61 241.5 270 45.9
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 1.5e-58 232.3 139 77.7
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.5e-53 213.8 190 54.2
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 8.3e-49 199.9 718 27.0
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.9e-45 188.7 159 54.7
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 4.7e-44 184.1 89 96.6
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 4.0e-43 181.0 109 74.3
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 6.8e-43 180.3 346 34.4
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.6e-39 169.1 164 55.5
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.0e-38 166.4 111 73.0
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 1.9e-37 162.2 266 36.8
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.3e-37 161.0 158 54.4
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 8.9e-35 153.3 382 33.5
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 6.4e-33 147.1 105 67.6
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 9.2e-32 143.3 107 69.2
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-29 136.3 609 25.5
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.9e-29 135.6 214 38.8
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 4.9e-25 120.9 84 72.6
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 5.1e-22 110.9 259 36.7
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 1.1e-21 109.8 86 59.3
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.9e-21 109.0 82 72.0
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 1.2e-18 99.8 123 46.3
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 4.4e-18 97.8 78 59.0
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 3.0e-14 85.1 88 51.1
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 8.1e-12 77.0 64 56.2
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 1.2e-07 63.2 73 49.3


User provided reference genes

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