Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 1.7e-187 659.1 310 100.0
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 2.8e-153 545.4 314 84.1
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 3.6e-153 545.0 312 83.3
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 8.1e-145 517.3 305 80.3
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 1.1e-133 480.3 313 75.7
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 1.4e-133 479.9 318 73.9
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 5.4e-133 478.0 314 73.6
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 6.0e-132 474.6 313 73.2
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 1.7e-131 473.0 318 72.6
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 3.0e-131 472.2 301 74.1
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 5.3e-128 461.5 304 73.0
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 3.8e-126 455.3 311 70.7
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 7.4e-122 441.0 325 68.0
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 8.1e-121 437.6 297 71.4
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 1.1e-120 437.2 307 69.4
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 1.8e-120 436.4 299 67.6
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 5.3e-120 434.9 320 65.9
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 6.9e-120 434.5 312 69.9
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 1.2e-119 433.7 310 69.0
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 1.2e-119 433.7 310 69.0
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 1.2e-119 433.7 310 69.0
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.0e-119 433.0 297 70.7
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 2.6e-119 432.6 297 70.7
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 4.5e-119 431.8 309 66.7
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 9.9e-119 430.6 309 66.7
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 9.9e-119 430.6 309 66.3
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 2.9e-118 429.1 310 67.1
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 3.8e-118 428.7 296 70.9
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 1.1e-117 427.2 305 65.9
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 1.4e-117 426.8 303 68.0
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 5.5e-117 424.9 319 66.5
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 5.5e-117 424.9 312 64.7
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.6e-116 423.3 292 69.9
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.6e-116 423.3 292 69.9
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 3.0e-115 419.1 324 65.7
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 1.5e-114 416.8 321 65.1
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 5.6e-114 414.8 315 65.4
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 9.6e-114 414.1 322 64.0
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 3.7e-113 412.1 276 69.9
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 4.8e-113 411.8 317 64.7
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 8.2e-113 411.0 285 66.0
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 1.8e-112 409.8 298 67.8
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 2.4e-112 409.5 306 65.0
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 9.0e-112 407.5 278 67.6
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 9.0e-112 407.5 268 70.5
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 1.5e-111 406.8 287 68.6
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 2.0e-111 406.4 317 63.7
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 1.0e-110 404.1 285 67.0
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.2e-110 402.9 275 66.5
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 2.9e-110 402.5 239 75.3
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 8.4e-110 401.0 265 70.9
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 1.1e-109 400.6 270 70.7
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 1.9e-109 399.8 299 61.9
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 1.9e-109 399.8 258 70.5
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 7.1e-109 397.9 270 70.4
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 1.2e-108 397.1 239 74.9
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 1.6e-108 396.7 270 69.6
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.1e-108 396.4 294 66.3
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 2.7e-108 396.0 306 63.1
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 3.5e-108 395.6 310 63.5
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 7.9e-108 394.4 273 66.7
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 7.9e-108 394.4 311 61.4
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 1.8e-107 393.3 287 67.6
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 1.8e-107 393.3 287 67.6
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 1.8e-107 393.3 287 67.6
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 8.7e-107 391.0 242 74.0
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 1.1e-106 390.6 304 61.8
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.1e-106 390.6 269 65.4
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 3.3e-106 389.0 317 60.3
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 4.3e-106 388.7 272 65.4
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 5.7e-106 388.3 272 66.5
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 7.4e-106 387.9 300 64.0
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 9.7e-106 387.5 288 64.9
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 9.7e-106 387.5 320 60.0
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 3.7e-105 385.6 303 60.1
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 4.8e-105 385.2 269 63.9
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 6.3e-105 384.8 276 65.2
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 6.3e-105 384.8 275 66.5
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 8.2e-105 384.4 236 72.0
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.1e-104 384.0 283 65.7
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 1.4e-104 383.6 288 64.6
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 2.4e-104 382.9 301 62.8
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 4.1e-104 382.1 301 62.5
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.2e-103 380.6 274 65.7
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 1.2e-103 380.6 269 63.6
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 4.5e-103 378.6 288 63.2
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 1.1e-101 374.0 270 64.4
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.1e-101 374.0 297 62.0
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 7.2e-101 371.3 234 71.4
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 3.6e-100 369.0 312 59.0
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 7.9e-100 367.9 301 59.8
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 7.9e-100 367.9 323 57.6
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 3.0e-99 365.9 270 63.7
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 1.9e-98 363.2 273 62.6
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 5.7e-98 361.7 297 57.9
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 9.7e-98 360.9 219 73.5
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 8.2e-97 357.8 252 63.9
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.1e-96 357.5 232 69.8
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 2.4e-96 356.3 320 57.8
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 9.1e-96 354.4 237 65.8
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 3.4e-95 352.4 277 59.9
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 7.7e-95 351.3 302 56.3
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 7.7e-95 351.3 282 58.2
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 5.0e-94 348.6 281 59.1
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 3.2e-93 345.9 291 56.4
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 9.4e-93 344.4 245 64.1
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 2.1e-92 343.2 233 67.8
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 3.0e-91 339.3 279 57.7
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 3.9e-91 339.0 306 54.2
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 5.1e-91 338.6 285 57.5
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 6.7e-91 338.2 226 67.3
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.1e-90 337.4 276 59.4
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 2.0e-90 336.7 288 54.9
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 2.6e-90 336.3 230 66.5
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 3.3e-90 335.9 278 59.4
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 3.3e-90 335.9 229 64.2
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 5.7e-90 335.1 282 58.2
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 5.7e-90 335.1 282 57.1
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 9.7e-90 334.3 194 77.8
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 1.3e-89 334.0 225 67.6
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 1.7e-89 333.6 226 65.9
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 1.7e-89 333.6 307 52.1
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 1.4e-88 330.5 271 56.5
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.4e-88 330.5 245 60.8
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 1.8e-88 330.1 271 56.5
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 6.9e-88 328.2 210 71.4
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.5e-87 327.0 225 63.1
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 2.0e-87 326.6 282 55.3
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 1.3e-86 323.9 278 58.3
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 1.3e-86 323.9 278 58.3
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 1.3e-86 323.9 278 58.3
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 1.3e-86 323.9 278 57.9
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 3.8e-86 322.4 278 58.3
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 1.2e-84 317.4 278 57.2
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 8.0e-84 314.7 289 55.7
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.3e-83 313.2 233 58.4
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 7.4e-82 308.1 196 73.5
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 2.8e-81 306.2 233 61.4
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 1.7e-78 297.0 227 58.1
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 3.2e-77 292.7 212 65.6
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 3.3e-74 282.7 304 49.0
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 2.8e-73 279.6 229 54.6
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 6.3e-73 278.5 198 65.7
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 7.0e-72 275.0 219 57.1
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 7.0e-72 275.0 228 53.1
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 9.4e-69 264.6 217 58.1
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 9.4e-69 264.6 261 49.8
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.7e-68 263.1 268 51.5
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 2.3e-67 260.0 241 51.0
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 3.4e-66 256.1 278 48.6
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 3.4e-66 256.1 153 75.8
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 7.0e-64 248.4 237 50.2
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 2.7e-63 246.5 230 49.6
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 5.9e-63 245.4 242 46.7
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.9e-61 240.4 231 49.8
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 3.6e-60 236.1 225 50.2
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 5.7e-58 228.8 223 48.9
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.1e-56 224.6 187 61.0
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.4e-56 223.4 245 44.9
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 2.4e-56 223.4 216 50.0
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.6e-55 220.7 139 72.7
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 1.0e-54 218.0 197 53.8
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 1.3e-54 217.6 236 43.2
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 2.9e-54 216.5 236 42.8
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 1.2e-52 211.1 262 45.4
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 8.0e-52 208.4 231 47.6
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 5.2e-51 205.7 315 35.9
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 2.6e-50 203.4 155 65.2
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 1.3e-49 201.1 153 60.1
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 2.0e-47 193.7 230 40.0
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.3e-46 190.3 109 78.0
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 6.2e-36 155.6 96 68.8
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 4.4e-34 149.4 87 75.9
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 5.8e-26 122.5 96 60.4
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 8.4e-17 92.0 60 68.3
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 1.3e-12 78.2 74 44.6
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 6.2e-12 75.9 62 58.1
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 1.9e-08 64.3 43 65.1


User provided reference genes

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