Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 4123.2 2088 100.0
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 3739.5 2082 91.6
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 2949.1 2090 73.3
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 2871.6 2079 72.2
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 2848.9 2099 70.5
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 2847.8 2107 71.0
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 2845.8 2085 71.2
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 2822.7 2077 71.2
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 2683.7 2136 66.4
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 2637.1 2113 66.1
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 2463.7 1511 82.9
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 1948.7 2141 51.4
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 1872.4 2134 50.3
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1859.7 2141 49.8
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 1856.6 2136 49.4
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1854.3 2128 49.6
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 1835.1 2145 48.6
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1818.9 2141 47.9
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1805.8 2149 47.5
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1789.6 2141 48.3
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1753.8 2138 46.9
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1735.7 2132 46.3
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1729.5 2142 46.8
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 1708.3 2147 45.9
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 1703.3 2136 46.3
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1696.8 2200 44.8
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1684.1 2139 45.8
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1680.6 2133 46.0
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1672.5 2133 45.9
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1648.6 2146 44.8
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1635.5 2134 44.8
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1610.1 2140 45.4
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1602.8 2139 43.7
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1593.6 2169 44.4
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1592.8 2137 44.4
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1578.5 2136 43.9
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1569.3 2132 43.7
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1567.7 2216 43.3
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1490.7 1793 47.0
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1479.2 2134 43.0
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1471.4 2129 42.0
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1468.8 2150 41.8
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1464.1 2134 42.0
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1438.7 2137 42.1
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1437.6 2140 41.1
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1437.6 2131 42.2
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1433.7 2139 41.9
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1431.4 2145 40.7
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1429.8 2113 41.2
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1421.0 2126 41.0
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1415.6 2159 40.4
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1412.1 2129 41.7
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1409.8 2132 40.8
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1394.8 2132 40.5
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1392.1 2144 40.1
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1389.4 2132 40.4
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1389.4 2146 40.1
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1387.1 2136 40.6
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1381.7 2128 40.1
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1363.6 2156 40.1
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1358.2 2143 40.0
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1357.4 2127 40.3
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1354.0 2186 38.7
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1352.0 2161 40.0
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1352.0 2194 39.0
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1345.1 2154 39.4
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1335.1 2086 40.7
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1334.7 2158 39.6
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1334.7 2172 39.8
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1320.8 2134 39.5
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1320.4 2056 40.1
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1315.1 2151 39.6
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1295.4 2116 38.2
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1290.4 2212 39.0
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1258.0 2126 39.3
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1254.6 2110 38.6
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1253.4 2131 38.8
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1251.5 2165 38.3
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1247.6 2159 38.7
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1204.9 1983 39.0
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1203.7 2113 36.6
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1199.1 2147 37.7
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1159.4 2135 36.9
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1156.7 2225 35.1
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1132.5 2121 36.8
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1128.2 2190 35.8
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1119.0 2125 37.6
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.9e-311 1072.8 2133 35.8
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 2.8e-305 1053.1 2122 35.6
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.2e-302 1043.5 1847 36.4
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 1.3e-283 981.1 611 84.1
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 2.9e-278 963.4 1734 36.9
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 7.8e-276 955.3 1705 36.2
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 4.3e-258 896.3 1561 36.5
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 1.4e-256 891.3 1766 35.6
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 2.4e-256 890.6 2118 32.8
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.4e-253 881.3 1293 41.5
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 4.5e-215 753.4 780 54.1
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 2.0e-191 674.9 1332 35.7
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.0e-182 646.0 1248 35.8
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.5e-162 578.9 584 54.1
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 7.8e-159 566.6 602 53.8
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 3.9e-150 537.7 2307 26.2
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.8e-140 505.0 725 42.8
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 4.0e-139 501.1 2155 25.7
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 3.2e-136 491.5 2270 25.1
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 2.5e-125 455.3 741 38.7
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 8.2e-124 450.3 1140 31.6
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 5.0e-121 441.0 2313 24.2
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 7.9e-119 433.7 756 38.0
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.3e-110 405.6 772 37.4
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 9.4e-104 383.6 654 40.1
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.6e-103 381.7 874 33.1
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.5e-96 359.0 677 35.7
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 3.2e-96 358.6 441 47.6
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.2e-93 350.1 676 35.2
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 5.7e-93 347.8 312 59.6
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 1.2e-90 340.1 339 56.3
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.7e-84 318.5 471 43.3
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 6.1e-79 301.2 350 47.1
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 3.6e-71 275.4 346 46.5
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 1.7e-60 240.0 186 68.8
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 8.3e-60 237.7 141 87.2
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.7e-58 232.6 396 37.9
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.9e-51 209.9 457 33.0
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 8.1e-47 194.5 527 29.0
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.1e-46 194.1 183 56.3
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 3.8e-44 185.7 1051 24.2
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 1.8e-38 166.8 117 76.1
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 9.9e-37 161.0 287 36.9
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.7e-36 160.2 147 55.8
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.8e-36 159.1 155 54.8
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 1.7e-33 150.2 143 58.7
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 3.0e-33 149.4 77 93.5
Psat5g198920 Pisum sativum HOM05D003876 ORTHO05D004560 4.9e-28 132.1 87 73.6
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 1.9e-27 130.2 89 73.0
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 6.0e-26 125.2 168 40.5
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.3e-24 119.4 245 33.5
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 8.4e-20 104.8 67 77.6
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 4.3e-16 92.4 112 45.5
arahy.Tifrunner.gnm1.ann1.PHJ7DT Arachis hypogaea HOM05D003876 ORTHO05D004560 9.6e-16 91.3 127 44.1
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 2.1e-15 90.1 121 47.9
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 2.6e-13 83.2 250 28.8
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 4.5e-13 82.4 72 56.9
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 2.2e-12 80.1 87 43.7
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 2.9e-12 79.7 104 42.3
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 4.9e-12 79.0 130 35.4
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 1.4e-11 77.4 251 28.7
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.3e-09 70.9 430 24.2
Psat5g198960 Pisum sativum HOM05D000263 ORTHO05D000213 3.0e-09 69.7 52 71.2
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 3.0e-09 69.7 52 65.4
QL08p010925 Quercus lobata HOM05D003876 ORTHO05D004560 3.9e-09 69.3 96 42.7
QL08p010874 Quercus lobata HOM05D003876 ORTHO05D004560 8.7e-09 68.2 84 46.4
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.3e-08 66.2 207 29.5
QL08p010959 Quercus lobata HOM05D003876 ORTHO05D004560 4.3e-08 65.9 86 45.3
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 7.4e-08 65.1 574 20.0
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 1.3e-07 64.3 139 28.8
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 2.8e-07 63.2 115 33.0
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.8e-07 62.4 228 26.3
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 1.8e-06 60.5 43 67.4
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 3.1e-06 59.7 62 43.5


User provided reference genes

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