Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G051300 Glycine max HOM05D001392 ORTHO05D003370 7.6e-58 226.9 108 100.0
Glyma.10G239500 Glycine max HOM05D001392 ORTHO05D003370 1.6e-23 112.8 141 46.8
Phvul.007G066400 Phaseolus vulgaris HOM05D001392 ORTHO05D003370 3.9e-22 108.2 57 86.0
LjContig00238g0000416 Lotus japonicus HOM05D001392 ORTHO05D003370 6.7e-22 107.5 62 80.6
Psat6g201440 Pisum sativum HOM05D001392 ORTHO05D003370 6.7e-22 107.5 57 87.7
VMungo0720G1540 Vigna mungo HOM05D001392 ORTHO05D003370 8.8e-22 107.1 57 86.0
Ca_10801_v3 Cicer arietinum L. HOM05D001392 ORTHO05D003370 3.3e-21 105.1 145 44.8
Lalb_Chr12g0210011 Lupinus albus HOM05D001392 ORTHO05D003370 7.4e-21 104.0 57 82.5
TPR.G34728 Trifolium pratense HOM05D001392 ORTHO05D003370 7.4e-21 104.0 57 84.2
Medtr1g101620 Medicago truncatula HOM05D001392 ORTHO05D003370 9.7e-21 103.6 57 86.0
arahy.Tifrunner.gnm1.ann1.K04UQ8 Arachis hypogaea HOM05D001392 ORTHO05D003370 2.2e-20 102.4 140 44.3
arahy.Tifrunner.gnm1.ann1.R98RGQ Arachis hypogaea HOM05D001392 ORTHO05D003370 2.2e-20 102.4 140 44.3
Actinidia34075 Actinidia chinensis HOM05D001392 ORTHO05D003370 2.6e-18 95.5 65 70.8
Actinidia34544 Actinidia chinensis HOM05D001392 ORTHO05D003370 2.6e-18 95.5 65 70.8
Lj9C302G3 Lonicera japonica HOM05D001392 ORTHO05D003370 3.4e-18 95.1 60 73.3
MD01G1196000 Malus domestica HOM05D001392 ORTHO05D003370 4.5e-18 94.7 80 61.2
MD07G1262800 Malus domestica HOM05D001392 ORTHO05D003370 4.5e-18 94.7 64 70.3
Cc06_g03770 Coffea canephora HOM05D001392 ORTHO05D003370 7.7e-18 94.0 65 67.7
Cfa008272 Carpinus fangiana HOM05D001392 ORTHO05D003370 2.2e-17 92.4 75 60.0
GSVIVG01010632001 Vitis vinifera HOM05D001392 ORTHO05D003370 2.2e-17 92.4 60 71.7
Dinv36391 Davidia involucrata HOM05D001392 ORTHO05D003370 3.8e-17 91.7 60 73.3
Prupe.1G576900 Prunus persica HOM05D001392 ORTHO05D003370 5.0e-17 91.3 60 75.0
MELO3C005366.2 Cucumis melo HOM05D001392 ORTHO05D003370 6.5e-17 90.9 76 56.6
DCAR_020225 Daucus carota HOM05D001392 ORTHO05D003370 6.5e-17 90.9 57 73.7
Dinv31233 Davidia involucrata HOM05D001392 ORTHO05D003370 6.5e-17 90.9 57 73.7
Lsat_1_v5_gn_5_61861 Lactuca sativa HOM05D001392 ORTHO05D003370 6.5e-17 90.9 57 68.4
Oeu006734.3 Olea europaea HOM05D001392 ORTHO05D003370 8.5e-17 90.5 67 67.2
CSS0006913 Camellia sinensis var. sinensis HOM05D001392 ORTHO05D003370 1.1e-16 90.1 60 68.3
CSS0026523 Camellia sinensis var. sinensis HOM05D001392 ORTHO05D003370 1.1e-16 90.1 60 68.3
CSS0030571 Camellia sinensis var. sinensis HOM05D001392 ORTHO05D003370 1.1e-16 90.1 60 68.3
CANSAT56G1922 Cannabis sativa HOM05D001392 ORTHO05D003370 1.1e-16 90.1 57 73.7
Thhalv10006653m.g Eutrema salsugineum HOM05D001392 ORTHO05D003370 1.1e-16 90.1 85 54.1
Haze_13766 Corylus avellana HOM05D001392 ORTHO05D003370 1.4e-16 89.7 72 59.7
Lsat_1_v5_gn_7_60720 Lactuca sativa HOM05D001392 ORTHO05D003370 1.4e-16 89.7 54 72.2
Lsat_1_v5_gn_7_60741 Lactuca sativa HOM05D001392 ORTHO05D003370 1.4e-16 89.7 54 72.2
Peaxi162Scf00254g00012 Petunia axillaris HOM05D001392 ORTHO05D003370 1.4e-16 89.7 65 69.2
A07p13390 Brassica napus HOM05D001392 ORTHO05D003370 1.9e-16 89.4 61 67.2
Peaxi162Scf00079g00089 Petunia axillaris HOM05D001392 ORTHO05D003370 1.9e-16 89.4 65 67.7
BraA07t29110Z Brassica rapa HOM05D001392 ORTHO05D003370 2.5e-16 89.0 57 70.2
ECA240G2105 Erigeron canadensis HOM05D001392 ORTHO05D003370 2.5e-16 89.0 64 64.1
Peaxi162Scf00169g00036 Petunia axillaris HOM05D001392 ORTHO05D003370 2.5e-16 89.0 65 67.7
Nitab4.5_0000669g0060 Nicotiana tabacum HOM05D001392 ORTHO05D003370 4.2e-16 88.2 65 69.2
Nitab4.5_0008025g0020 Nicotiana tabacum HOM05D001392 ORTHO05D003370 4.2e-16 88.2 65 69.2
TPR.G17429 Trifolium pratense HOM05D001392 ORTHO05D003370 4.2e-16 88.2 57 73.7
BcaC06g35085 Brassica carinata HOM05D001392 ORTHO05D003370 5.5e-16 87.8 61 67.2
BcaC06g35086 Brassica carinata HOM05D001392 ORTHO05D003370 5.5e-16 87.8 61 67.2
C07p20010 Brassica napus HOM05D001392 ORTHO05D003370 5.5e-16 87.8 61 67.2
BolC7t42520H Brassica oleracea HOM05D001392 ORTHO05D003370 5.5e-16 87.8 61 67.2
FvH4_7g28940 Fragaria vesca HOM05D001392 ORTHO05D003370 5.5e-16 87.8 65 67.7
FAN03G1076 Fragaria x ananassa HOM05D001392 ORTHO05D003370 5.5e-16 87.8 65 67.7
FAN03G1857 Fragaria x ananassa HOM05D001392 ORTHO05D003370 5.5e-16 87.8 65 67.7
FAN06G3412 Fragaria x ananassa HOM05D001392 ORTHO05D003370 5.5e-16 87.8 65 67.7
FAN06G3456 Fragaria x ananassa HOM05D001392 ORTHO05D003370 5.5e-16 87.8 65 67.7
FAN10G1869 Fragaria x ananassa HOM05D001392 ORTHO05D003370 5.5e-16 87.8 65 67.7
HanXRQChr03g0071441 Helianthus annuus HOM05D001392 ORTHO05D003370 5.5e-16 87.8 61 65.6
CiPaw.04G068200 Carya illinoinensis HOM05D001392 ORTHO05D003370 7.2e-16 87.4 75 58.7
RcHm_v2.0_Chr1g0376611 Rosa chinensis HOM05D001392 ORTHO05D003370 7.2e-16 87.4 60 70.0
CARHR260940 Cardamine hirsuta HOM05D001392 ORTHO05D003370 9.4e-16 87.0 57 70.2
CsaV3_5G005900 Cucumis sativus L. HOM05D001392 ORTHO05D003370 9.4e-16 87.0 63 65.1
Migut.J00692 Erythranthe guttata HOM05D001392 ORTHO05D003370 9.4e-16 87.0 57 70.2
HanXRQChr14g0461381 Helianthus annuus HOM05D001392 ORTHO05D003370 9.4e-16 87.0 60 66.7
Oeu001345.1 Olea europaea HOM05D001392 ORTHO05D003370 9.4e-16 87.0 64 65.6
Prupe.2G289400 Prunus persica HOM05D001392 ORTHO05D003370 9.4e-16 87.0 75 61.3
Migut.L01675 Erythranthe guttata HOM05D001392 ORTHO05D003370 1.2e-15 86.7 62 62.9
Nitab4.5_0000203g0010 Nicotiana tabacum HOM05D001392 ORTHO05D003370 1.2e-15 86.7 57 71.9
Nitab4.5_0004484g0010 Nicotiana tabacum HOM05D001392 ORTHO05D003370 1.2e-15 86.7 68 66.2
QL09p048218 Quercus lobata HOM05D001392 ORTHO05D003370 1.2e-15 86.7 60 68.3
ClCG01G005680 Citrullus lanatus HOM05D001392 ORTHO05D003370 1.6e-15 86.3 65 66.2
Sed0018333 Sechium edule HOM05D001392 ORTHO05D003370 1.6e-15 86.3 65 67.7
AL3G41580 Arabidopsis lyrata HOM05D001392 ORTHO05D003370 2.1e-15 85.9 71 62.0
Migut.J00558 Erythranthe guttata HOM05D001392 ORTHO05D003370 2.1e-15 85.9 67 64.2
vmacro06728 Vaccinium macrocarpon HOM05D001392 ORTHO05D003370 2.7e-15 85.5 61 65.6
Carub.0005s0101 Capsella rubella HOM05D001392 ORTHO05D003370 3.6e-15 85.1 57 68.4
RcHm_v2.0_Chr7g0218411 Rosa chinensis HOM05D001392 ORTHO05D003370 3.6e-15 85.1 57 70.2
A08p27330 Brassica napus HOM05D001392 ORTHO05D003370 4.7e-15 84.7 57 68.4
BolC3t19544H Brassica oleracea HOM05D001392 ORTHO05D003370 4.7e-15 84.7 57 68.4
BraA08t34676Z Brassica rapa HOM05D001392 ORTHO05D003370 4.7e-15 84.7 57 68.4
MD15G1433500 Malus domestica HOM05D001392 ORTHO05D003370 4.7e-15 84.7 60 70.0
SGA_v2.0_scaffold35G14149 Striga asiatica HOM05D001392 ORTHO05D003370 4.7e-15 84.7 67 64.2
Duzib170G0790 Durio zibethinus HOM05D001392 ORTHO05D003370 6.1e-15 84.3 57 68.4
Oeu022370.1 Olea europaea HOM05D001392 ORTHO05D003370 6.1e-15 84.3 67 62.7
QL09p015520 Quercus lobata HOM05D001392 ORTHO05D003370 6.1e-15 84.3 90 51.1
RcHm_v2.0_Chr7g0232251 Rosa chinensis HOM05D001392 ORTHO05D003370 6.1e-15 84.3 57 70.2
Sc07g0001630 Simmondsia chinensis HOM05D001392 ORTHO05D003370 6.1e-15 84.3 62 64.5
THA.LOC104805109 Tarenaya hassleriana HOM05D001392 ORTHO05D003370 8.0e-15 84.0 57 68.4
THA.LOC104808369 Tarenaya hassleriana HOM05D001392 ORTHO05D003370 8.0e-15 84.0 57 68.4
THA.LOC104824111 Tarenaya hassleriana HOM05D001392 ORTHO05D003370 8.0e-15 84.0 71 62.0
Ah.03g134560 Amaranthus hybridus HOM05D001392 ORTHO05D003370 1.0e-14 83.6 65 63.1
TWI15G0272 Tripterygium wilfordii HOM05D001392 ORTHO05D003370 1.0e-14 83.6 64 59.4
MSTRG.26714 Avicennia marina HOM05D001392 ORTHO05D003370 1.4e-14 83.2 67 64.2
Cpa.g.sc2.74 Carica papaya HOM05D001392 ORTHO05D003370 1.4e-14 83.2 57 64.9
PGR031G3606 Punica granatum HOM05D001392 ORTHO05D003370 1.8e-14 82.8 60 68.3
TWI81G0741 Tripterygium wilfordii HOM05D001392 ORTHO05D003370 1.8e-14 82.8 64 59.4
AT1G27160 Arabidopsis thaliana HOM05D001392 ORTHO05D003370 2.3e-14 82.4 62 61.3
Ciclev10004208m.g Citrus clementina HOM05D001392 ORTHO05D003370 2.3e-14 82.4 64 59.4
Solyc09g007540.3 Solanum lycopersicum HOM05D001392 ORTHO05D003370 2.3e-14 82.4 57 68.4
Sopen09g002410 Solanum pennellii HOM05D001392 ORTHO05D003370 2.3e-14 82.4 57 68.4
CAN.G1091.5 Capsicum annuum HOM05D001392 ORTHO05D003370 3.0e-14 82.0 57 68.4
Eucgr.E01106 Eucalyptus grandis HOM05D001392 ORTHO05D003370 3.0e-14 82.0 57 64.9
Eucgr.F04425 Eucalyptus grandis HOM05D001392 ORTHO05D003370 3.9e-14 81.6 67 62.7
AUR62014110 Chenopodium quinoa HOM05D001392 ORTHO05D003370 5.2e-14 81.3 65 61.5
Hund20715 Selenicereus undatus HOM05D001392 ORTHO05D003370 5.2e-14 81.3 57 64.9
EL10Ac5g11700 Beta vulgaris HOM05D001392 ORTHO05D003370 6.7e-14 80.9 58 62.1
AUR62002803 Chenopodium quinoa HOM05D001392 ORTHO05D003370 6.7e-14 80.9 65 61.5
Gohir.A08G018000 Gossypium hirsutum HOM05D001392 ORTHO05D003370 6.7e-14 80.9 57 66.7
MD17G1256800 Malus domestica HOM05D001392 ORTHO05D003370 6.7e-14 80.9 75 56.0
PGR031G0644 Punica granatum HOM05D001392 ORTHO05D003370 8.8e-14 80.5 60 65.0
COL.COLO4_31125 Corchorus olitorius HOM05D001392 ORTHO05D003370 1.1e-13 80.1 57 64.9
Thhalv10006628m.g Eutrema salsugineum HOM05D001392 ORTHO05D003370 1.1e-13 80.1 64 60.9
AT1G14610 Arabidopsis thaliana HOM05D001392 ORTHO05D003370 1.5e-13 79.7 57 64.9
Os10g0506200 Oryza sativa ssp. japonica HOM05D001392 ORTHO05D003370 1.5e-13 79.7 73 54.8
Sp1g12970 Schrenkiella parvula HOM05D001392 ORTHO05D003370 1.5e-13 79.7 57 66.7
TAR375G1057 Trochodendron aralioides HOM05D001392 ORTHO05D003370 1.5e-13 79.7 57 68.4
Carub.0001s1437 Capsella rubella HOM05D001392 ORTHO05D003370 2.0e-13 79.3 57 64.9
Gohir.D08G028600 Gossypium hirsutum HOM05D001392 ORTHO05D003370 2.0e-13 79.3 57 63.2
Actinidia23793 Actinidia chinensis HOM05D001392 ORTHO05D003370 2.6e-13 79.0 58 65.5
BraA08t35113Z Brassica rapa HOM05D001392 ORTHO05D003370 2.6e-13 79.0 57 64.9
SEGI_04262 Sequoiadendron giganteum HOM05D001392 ORTHO05D003370 2.6e-13 79.0 64 59.4
SEGI_20814 Sequoiadendron giganteum HOM05D001392 ORTHO05D003370 2.6e-13 79.0 64 57.8
AL1G26580 Arabidopsis lyrata HOM05D001392 ORTHO05D003370 3.3e-13 78.6 57 64.9
EL10Ac8g19565 Beta vulgaris HOM05D001392 ORTHO05D003370 3.3e-13 78.6 58 60.3
BcaC07g38749 Brassica carinata HOM05D001392 ORTHO05D003370 3.3e-13 78.6 57 63.2
BcaNung05660 Brassica carinata HOM05D001392 ORTHO05D003370 3.3e-13 78.6 57 63.2
C08p16790 Brassica napus HOM05D001392 ORTHO05D003370 3.3e-13 78.6 57 63.2
BolC8t49300H Brassica oleracea HOM05D001392 ORTHO05D003370 3.3e-13 78.6 57 63.2
Manes.09G005800 Manihot esculenta HOM05D001392 ORTHO05D003370 3.3e-13 78.6 57 64.9
COL.COLO4_25471 Corchorus olitorius HOM05D001392 ORTHO05D003370 4.4e-13 78.2 57 63.2
Gorai.004G025700 Gossypium raimondii HOM05D001392 ORTHO05D003370 4.4e-13 78.2 57 61.4
Sabra07G0003000 Salix brachista HOM05D001392 ORTHO05D003370 4.4e-13 78.2 58 65.5
CARHR015110 Cardamine hirsuta HOM05D001392 ORTHO05D003370 5.7e-13 77.8 57 63.2
unitig_744.g24676 Utricularia gibba HOM05D001392 ORTHO05D003370 5.7e-13 77.8 57 64.9
BcaB02g06531 Brassica carinata HOM05D001392 ORTHO05D003370 7.4e-13 77.4 57 64.9
BcaC05g25377 Brassica carinata HOM05D001392 ORTHO05D003370 7.4e-13 77.4 57 64.9
A06p10670 Brassica napus HOM05D001392 ORTHO05D003370 7.4e-13 77.4 57 64.9
A09p61990 Brassica napus HOM05D001392 ORTHO05D003370 7.4e-13 77.4 57 64.9
C05p12580 Brassica napus HOM05D001392 ORTHO05D003370 7.4e-13 77.4 57 64.9
BolC5t30002H Brassica oleracea HOM05D001392 ORTHO05D003370 7.4e-13 77.4 57 64.9
BraA06t24247Z Brassica rapa HOM05D001392 ORTHO05D003370 7.4e-13 77.4 57 64.9
BraA09t41562Z Brassica rapa HOM05D001392 ORTHO05D003370 7.4e-13 77.4 57 64.9
Zm00001eb104290 Zea mays HOM05D001392 ORTHO05D003370 7.4e-13 77.4 57 63.2
A08p31910 Brassica napus HOM05D001392 ORTHO05D003370 1.3e-12 76.6 57 61.4
PSO478G1977 Papaver somniferum HOM05D001392 ORTHO05D003370 1.3e-12 76.6 66 60.6
Potri.005G087850 Populus trichocarpa HOM05D001392 ORTHO05D003370 1.3e-12 76.6 63 60.3
Aa31LG1G460 Aethionema arabicum HOM05D001392 ORTHO05D003370 1.7e-12 76.3 62 61.3
Carub.0001s3391 Capsella rubella HOM05D001392 ORTHO05D003370 2.2e-12 75.9 60 60.0
Os03g0694900 Oryza sativa ssp. japonica HOM05D001392 ORTHO05D003370 2.2e-12 75.9 62 53.2
Potri.007G004100 Populus trichocarpa HOM05D001392 ORTHO05D003370 2.2e-12 75.9 65 61.5
SHI28861 Sapria himalayana HOM05D001392 ORTHO05D003370 2.8e-12 75.5 57 63.2
ATR0782G056 Amborella trichopoda HOM05D001392 ORTHO05D003370 3.7e-12 75.1 64 57.8
CARHR024700 Cardamine hirsuta HOM05D001392 ORTHO05D003370 3.7e-12 75.1 71 57.7
BcaC07g41556 Brassica carinata HOM05D001392 ORTHO05D003370 6.3e-12 74.3 57 63.2
C08p45570 Brassica napus HOM05D001392 ORTHO05D003370 6.3e-12 74.3 57 63.2
BolC8t52110H Brassica oleracea HOM05D001392 ORTHO05D003370 6.3e-12 74.3 57 63.2
Zm00001eb415220 Zea mays HOM05D001392 ORTHO05D003370 6.3e-12 74.3 58 58.6
MBI18_g01867_MAGBIO Magnolia biondii HOM05D001392 ORTHO05D003370 1.1e-11 73.6 58 63.8
PGR031G2005 Punica granatum HOM05D001392 ORTHO05D003370 1.8e-11 72.8 68 57.4
PGR031G3093 Punica granatum HOM05D001392 ORTHO05D003370 1.8e-11 72.8 68 57.4
Thecc.07G159900 Theobroma cacao HOM05D001392 ORTHO05D003370 1.8e-11 72.8 74 50.0
Aqoxy7G00465 Aquilegia oxysepala HOM05D001392 ORTHO05D003370 2.4e-11 72.4 63 58.7
CDE08G1587 Ceratophyllum demersum HOM05D001392 ORTHO05D003370 2.4e-11 72.4 63 58.7
PSO782G2668 Papaver somniferum HOM05D001392 ORTHO05D003370 3.1e-11 72.0 66 57.6
Thecc.09G180600 Theobroma cacao HOM05D001392 ORTHO05D003370 5.3e-11 71.2 57 57.9
Aqoxy2G03097 Aquilegia oxysepala HOM05D001392 ORTHO05D003370 7.0e-11 70.9 63 57.1
RcHm_v2.0_Chr7g0182401 Rosa chinensis HOM05D001392 ORTHO05D003370 1.2e-10 70.1 60 56.7
MCO07G752 Micromonas commoda HOM05D001392 ORTHO05D003370 7.7e-10 67.4 54 59.3
Mapoly0132s0012 Marchantia polymorpha HOM05D001392 ORTHO05D003370 1.3e-09 66.6 57 56.1
RcHm_v2.0_Chr7g0232301 Rosa chinensis HOM05D001392 ORTHO05D003370 2.2e-09 65.9 55 54.5
BcaB03g13091 Brassica carinata HOM05D001392 ORTHO05D003370 2.9e-09 65.5 56 55.4
Cre12.g537100 Chlamydomonas reinhardtii HOM05D001392 ORTHO05D003370 2.9e-09 65.5 54 53.7
Pp3c2_9830 Physcomitrium patens HOM05D001392 ORTHO05D003370 2.9e-09 65.5 64 45.3
PRCOL_00006948 Prasinoderma coloniale HOM05D001392 ORTHO05D003370 2.9e-09 65.5 71 50.7
SMO358G0706 Selaginella moellendorffii HOM05D001392 ORTHO05D003370 3.8e-09 65.1 65 50.8
CBR_g31285 Chara braunii HOM05D001392 ORTHO05D003370 5.0e-09 64.7 41 68.3
AagrBONN_evm.TU.Sc2ySwM_228.4580 Anthoceros agrestis HOM05D001392 ORTHO05D003370 2.5e-08 62.4 57 52.6
AagrBONN_evm.TU.Sc2ySwM_344.3387 Anthoceros agrestis HOM05D001392 ORTHO05D003370 3.2e-08 62.0 53 54.7
Aqoxy2G00888 Aquilegia oxysepala HOM05D001392 ORTHO05D003370 4.2e-08 61.6 58 53.4
SMO165G0098 Selaginella moellendorffii HOM05D001392 ORTHO05D003370 7.2e-08 60.8 50 52.0


User provided reference genes

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