Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 8.8e-268 926.4 474 100.0
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 2.1e-245 852.0 473 94.1
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 3.3e-230 801.6 476 88.2
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 7.3e-230 800.4 477 88.1
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 8.4e-210 733.8 473 81.0
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 3.0e-207 725.3 500 78.2
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 2.8e-205 718.8 500 77.6
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 1.1e-204 716.8 477 78.8
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 6.0e-200 701.0 474 77.4
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 1.9e-198 696.0 502 74.9
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 1.3e-197 693.3 476 76.9
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 1.8e-196 689.5 505 72.3
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 4.0e-196 688.3 502 71.9
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 4.9e-194 681.4 504 71.2
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 2.5e-193 679.1 506 73.7
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 2.1e-192 676.0 490 73.7
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 4.6e-192 674.9 483 74.5
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 4.6e-192 674.9 502 70.9
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 1.3e-191 673.3 489 73.4
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 3.9e-191 671.8 489 74.0
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 3.9e-191 671.8 490 72.0
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 6.7e-191 671.0 492 71.7
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 1.1e-190 670.2 482 73.2
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 7.4e-190 667.5 486 74.9
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 2.8e-189 665.6 486 72.2
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 3.7e-189 665.2 491 72.3
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 1.1e-188 663.7 487 72.9
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 5.3e-188 661.4 483 72.9
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 9.0e-188 660.6 478 74.5
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 1.3e-186 656.8 498 71.3
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 5.7e-182 641.3 460 74.6
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 1.3e-181 640.2 483 71.2
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 2.2e-181 639.4 496 69.2
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 6.3e-181 637.9 489 69.7
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 1.4e-180 636.7 491 69.9
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 1.5e-179 633.3 491 69.5
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 5.9e-179 631.3 522 65.9
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 3.8e-178 628.6 492 68.3
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.4e-177 626.7 489 69.7
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.9e-177 626.3 537 64.8
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 3.2e-177 625.5 479 69.5
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 4.2e-177 625.2 504 67.1
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.2e-176 623.6 491 69.2
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 2.1e-176 622.9 491 68.2
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 2.7e-176 622.5 489 68.9
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 4.6e-176 621.7 434 71.9
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 7.9e-176 620.9 489 67.1
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 7.9e-176 620.9 450 72.0
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.4e-175 620.2 453 71.3
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 2.3e-175 619.4 458 69.2
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 2.0e-174 616.3 489 66.5
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 2.6e-174 615.9 384 83.1
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 2.6e-174 615.9 478 69.0
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 3.3e-174 615.5 433 72.7
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 3.3e-174 615.5 478 69.2
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 3.3e-174 615.5 444 71.8
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 4.4e-174 615.1 462 69.7
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 4.4e-174 615.1 489 67.1
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.7e-174 614.8 478 69.2
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 5.7e-174 614.8 433 73.4
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 7.4e-174 614.4 485 68.5
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 9.7e-174 614.0 473 66.8
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 9.7e-174 614.0 472 69.1
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.7e-173 613.2 478 69.2
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 2.2e-173 612.8 492 67.3
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 2.2e-173 612.8 486 68.5
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 8.2e-173 610.9 458 68.6
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 1.4e-172 610.1 409 75.8
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 1.5e-171 606.7 483 68.3
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 8.5e-170 600.9 478 68.6
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 9.4e-169 597.4 501 65.7
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 2.0e-166 589.7 437 69.3
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 3.3e-166 589.0 504 64.7
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 1.3e-165 587.0 373 80.7
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 1.7e-165 586.6 437 71.2
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 3.7e-165 585.5 496 63.7
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 1.4e-164 583.6 482 66.8
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 1.1e-161 573.9 509 61.9
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 7.2e-161 571.2 482 65.1
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 4.4e-158 562.0 491 62.3
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 4.4e-158 562.0 458 64.6
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 7.5e-158 561.2 458 64.6
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 1.3e-157 560.5 467 65.1
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 2.2e-157 559.7 439 67.0
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 1.0e-154 550.8 422 69.2
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.9e-153 546.6 436 65.8
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.5e-153 546.2 540 57.4
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 6.3e-149 531.6 368 75.3
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 6.3e-149 531.6 481 63.2
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 4.1e-148 528.9 356 73.3
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 7.0e-148 528.1 355 78.9
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 5.0e-146 521.9 434 65.4
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 8.0e-144 514.6 518 57.1
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 4.4e-142 508.8 389 66.8
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 7.5e-134 481.5 472 58.7
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 3.7e-133 479.2 437 58.8
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 1.7e-130 470.3 438 59.6
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 1.4e-127 460.7 346 66.2
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 2.6e-126 456.4 479 53.2
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 5.8e-126 455.3 354 65.5
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 7.5e-126 454.9 306 72.9
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.2e-115 421.0 338 63.6
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 1.5e-113 414.1 358 62.0
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 2.7e-107 393.3 421 53.2
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 3.5e-107 392.9 434 51.4
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 1.1e-105 387.9 461 49.5
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 9.6e-105 384.8 388 53.4
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 1.6e-104 384.0 432 49.5
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 1.2e-102 377.9 270 72.2
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 7.1e-100 368.6 399 49.6
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 7.8e-99 365.2 250 73.6
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 5.3e-95 352.4 346 59.0
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 1.9e-84 317.4 341 51.0
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.5e-78 297.7 334 52.7
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 1.0e-74 285.0 354 46.9
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 3.7e-72 276.6 266 57.5
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 1.0e-61 241.9 472 35.2
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 7.2e-60 235.7 280 50.0
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 4.5e-54 216.5 438 33.1
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 2.0e-41 174.5 188 55.9
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 5.3e-39 166.4 135 68.9
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 5.7e-33 146.4 113 69.0
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 7.5e-33 146.0 125 66.4
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 6.3e-32 142.9 125 68.8
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.8e-27 127.5 175 43.4
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 1.9e-20 104.8 102 53.9
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 6.8e-18 96.3 198 34.8
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 1.7e-16 91.7 67 62.7
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.4e-15 87.8 95 48.4
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 3.2e-15 87.4 125 45.6
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 5.4e-15 86.7 89 51.7
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 9.5e-12 75.9 104 48.1
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 9.5e-12 75.9 64 70.3
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 3.6e-11 73.9 55 63.6
Psat5g095160 Pisum sativum HOM05D001167 ORTHO05D036681 4.0e-10 70.5 73 58.9
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 7.0e-07 59.7 265 24.9


User provided reference genes

Program Settings