Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G262000 Glycine max HOM05D001537 ORTHO05D038924 1.2e-115 419.9 215 100.0
Glyma.14G223700 Glycine max HOM05D001537 ORTHO05D002595 3.0e-66 255.8 141 87.2
VMungo0647G1246 Vigna mungo HOM05D001537 ORTHO05D002595 2.0e-54 216.5 139 75.5
Phvul.001G000600 Phaseolus vulgaris HOM05D001537 ORTHO05D002595 1.4e-50 203.8 139 71.2
TPR.G26416 Trifolium pratense HOM05D001537 ORTHO05D002595 2.3e-42 176.4 140 68.6
Ca_14546_v3 Cicer arietinum L. HOM05D001537 ORTHO05D002595 6.8e-42 174.9 144 65.3
Medtr1g026490 Medicago truncatula HOM05D001537 ORTHO05D002595 1.2e-41 174.1 142 67.6
Lalb_Chr03g0033681 Lupinus albus HOM05D001537 ORTHO05D002595 1.7e-40 170.2 141 64.5
Ca_25241_v3 Cicer arietinum L. HOM05D001537 ORTHO05D002595 2.9e-40 169.5 139 66.2
arahy.Tifrunner.gnm1.ann1.74ZX0A Arachis hypogaea HOM05D001537 ORTHO05D002595 3.2e-39 166.0 141 62.4
arahy.Tifrunner.gnm1.ann1.UA1BSP Arachis hypogaea HOM05D001537 ORTHO05D002595 5.4e-39 165.2 141 62.4
Lj5g0001846 Lotus japonicus HOM05D001537 ORTHO05D002595 7.1e-39 164.9 150 62.7
Psat6g000440 Pisum sativum HOM05D001537 ORTHO05D002595 1.7e-37 160.2 140 65.7
Haze_22823 Corylus avellana HOM05D001537 ORTHO05D002595 4.3e-20 102.4 140 42.1
Dinv31961 Davidia involucrata HOM05D001537 ORTHO05D002595 3.1e-18 96.3 85 55.3
CSS0018686 Camellia sinensis var. sinensis HOM05D001537 ORTHO05D002595 4.0e-18 95.9 85 54.1
Sabra02G0006500 Salix brachista HOM05D001537 ORTHO05D002595 5.3e-18 95.5 141 39.7
GSVIVG01013389001 Vitis vinifera HOM05D001537 ORTHO05D002595 9.0e-18 94.7 150 41.3
Atru.chr13.115 Acer truncatum HOM05D001537 ORTHO05D002595 2.0e-17 93.6 127 43.3
CiPaw.07G136300 Carya illinoinensis HOM05D001537 ORTHO05D002595 1.3e-16 90.9 144 40.3
QL02p014921 Quercus lobata HOM05D001537 ORTHO05D002595 8.4e-16 88.2 144 38.2
Actinidia17058 Actinidia chinensis HOM05D001537 ORTHO05D002595 2.4e-15 86.7 87 49.4
Prupe.5G009400 Prunus persica HOM05D001537 ORTHO05D002595 5.4e-15 85.5 124 38.7
PGR031G0149 Punica granatum HOM05D001537 ORTHO05D002595 9.3e-15 84.7 138 36.2
Ciclev10000045m.g Citrus clementina HOM05D001537 ORTHO05D002595 1.6e-14 84.0 136 40.4
CANSAT25G3097 Cannabis sativa HOM05D001537 ORTHO05D002595 2.1e-14 83.6 124 37.9
MBI05_g14353_MAGBIO Magnolia biondii HOM05D001537 ORTHO05D002595 7.9e-14 81.6 111 42.3
RcHm_v2.0_Chr7g0215861 Rosa chinensis HOM05D001537 ORTHO05D002595 7.9e-14 81.6 134 36.6
Potri.002G008700 Populus trichocarpa HOM05D001537 ORTHO05D002595 1.0e-13 81.3 123 41.5
Oeu029250.4 Olea europaea HOM05D001537 ORTHO05D002595 1.3e-13 80.9 84 47.6
MD16G1283500 Malus domestica HOM05D001537 ORTHO05D002595 1.8e-13 80.5 86 44.2
Nn6g31690 Nelumbo nucifera HOM05D001537 ORTHO05D002595 2.3e-13 80.1 104 41.3
arahy.Tifrunner.gnm1.ann1.10R7VE Arachis hypogaea HOM05D001537 ORTHO05D038924 8.7e-13 78.2 53 67.9
Eucgr.F03572 Eucalyptus grandis HOM05D001537 ORTHO05D002595 8.7e-13 78.2 122 37.7
FAN13G0321 Fragaria x ananassa HOM05D001537 ORTHO05D002595 1.1e-12 77.8 87 43.7
FvH4_5g25570 Fragaria vesca HOM05D001537 ORTHO05D002595 1.9e-12 77.0 87 42.5
AUR62035135 Chenopodium quinoa HOM05D001537 ORTHO05D002595 2.5e-12 76.6 104 41.3
Lj4A808G42 Lonicera japonica HOM05D001537 ORTHO05D002595 2.5e-12 76.6 84 53.6
Cpa.g.sc26.169 Carica papaya HOM05D001537 ORTHO05D017787 4.3e-12 75.9 100 40.0
FAN08G0357 Fragaria x ananassa HOM05D001537 ORTHO05D002595 4.3e-12 75.9 87 42.5
Manes.18G003801 Manihot esculenta HOM05D001537 ORTHO05D002595 4.3e-12 75.9 127 37.8
AUR62042903 Chenopodium quinoa HOM05D001537 ORTHO05D002595 5.6e-12 75.5 104 41.3
FAN18G0587 Fragaria x ananassa HOM05D001537 ORTHO05D002595 9.6e-12 74.7 87 41.4
THA.LOC104811474 Tarenaya hassleriana HOM05D001537 ORTHO05D002595 1.6e-11 73.9 86 46.5
TAR628G1618 Trochodendron aralioides HOM05D001537 ORTHO05D002595 2.8e-11 73.2 126 36.5
SHI07968 Sapria himalayana HOM05D001537 ORTHO05D002595 6.2e-11 72.0 103 38.8
Hund01784 Selenicereus undatus HOM05D001537 ORTHO05D002595 6.2e-11 72.0 101 39.6
AT1G20720 Arabidopsis thaliana HOM05D001537 ORTHO05D002595 8.1e-11 71.6 102 39.2
Carub.0001s2019 Capsella rubella HOM05D001537 ORTHO05D002595 8.1e-11 71.6 91 40.7
MSTRG.986 Avicennia marina HOM05D001537 ORTHO05D002595 1.4e-10 70.9 84 45.2
AL1G33710 Arabidopsis lyrata HOM05D001537 ORTHO05D002595 1.8e-10 70.5 88 42.0
Aa31LG7G4910 Aethionema arabicum HOM05D001537 ORTHO05D002595 2.4e-10 70.1 87 43.7
vmacro21795 Vaccinium macrocarpon HOM05D001537 ORTHO05D002595 3.1e-10 69.7 84 41.7
CARHR021170 Cardamine hirsuta HOM05D001537 ORTHO05D002595 4.0e-10 69.3 89 41.6
DCAR_022967 Daucus carota HOM05D001537 ORTHO05D002595 4.0e-10 69.3 88 46.6
Sed0022111 Sechium edule HOM05D001537 ORTHO05D002595 4.0e-10 69.3 88 40.9
Solyc10g079510.3 Solanum lycopersicum HOM05D001537 ORTHO05D002595 5.3e-10 68.9 102 44.1
Carub.0001s2020 Capsella rubella HOM05D001537 ORTHO05D002595 6.9e-10 68.6 115 30.4
Lsat_1_v5_gn_2_1140 Lactuca sativa HOM05D001537 ORTHO05D002595 6.9e-10 68.6 43 67.4
Lsat_1_v5_gn_2_860 Lactuca sativa HOM05D001537 ORTHO05D002595 6.9e-10 68.6 43 67.4
Sc15g0004240 Simmondsia chinensis HOM05D001537 ORTHO05D002595 6.9e-10 68.6 87 46.0
BcaB07g32070 Brassica carinata HOM05D001537 ORTHO05D002595 1.2e-09 67.8 44 63.6
BcaNung04092 Brassica carinata HOM05D001537 ORTHO05D002595 1.2e-09 67.8 45 60.0
A06p16720 Brassica napus HOM05D001537 ORTHO05D002595 1.2e-09 67.8 44 63.6
BraA06t24777Z Brassica rapa HOM05D001537 ORTHO05D002595 1.2e-09 67.8 44 63.6
MELO3C017033.2 Cucumis melo HOM05D001537 ORTHO05D002595 1.2e-09 67.8 53 54.7
C05p19320 Brassica napus HOM05D001537 ORTHO05D002595 1.5e-09 67.4 106 35.8
BolC5t30633H Brassica oleracea HOM05D001537 ORTHO05D002595 1.5e-09 67.4 106 35.8
Rhsim06G0005400 Rhododendron simsii HOM05D001537 ORTHO05D002595 1.5e-09 67.4 104 38.5
SGA_v2.0_scaffold235G43685 Striga asiatica HOM05D001537 ORTHO05D002595 1.5e-09 67.4 84 40.5
TWI56G1355 Tripterygium wilfordii HOM05D001537 ORTHO05D002595 1.5e-09 67.4 113 38.1
Aqoxy5G01007 Aquilegia oxysepala HOM05D001537 ORTHO05D002595 2.0e-09 67.0 91 37.4
Ah.11g041620 Amaranthus hybridus HOM05D001537 ORTHO05D002595 2.6e-09 66.6 97 40.2
HanXRQChr06g0185181 Helianthus annuus HOM05D001537 ORTHO05D002595 2.6e-09 66.6 83 39.8
ClCG11G018810 Citrullus lanatus HOM05D001537 ORTHO05D002595 3.4e-09 66.2 53 54.7
Migut.O00316 Erythranthe guttata HOM05D001537 ORTHO05D002595 3.4e-09 66.2 86 43.0
Sp1g18440 Schrenkiella parvula HOM05D001537 ORTHO05D002595 3.4e-09 66.2 98 43.9
EL10Ac1g01914 Beta vulgaris HOM05D001537 ORTHO05D002595 4.5e-09 65.9 47 61.7
CsaV3_4G037380 Cucumis sativus L. HOM05D001537 ORTHO05D002595 4.5e-09 65.9 52 53.8
CsaV3_4G037390 Cucumis sativus L. HOM05D001537 ORTHO05D002595 5.8e-09 65.5 53 52.8
ECA238G0307 Erigeron canadensis HOM05D001537 ORTHO05D002595 5.8e-09 65.5 106 35.8
PSO210G4823 Papaver somniferum HOM05D001537 ORTHO05D002595 5.8e-09 65.5 77 41.6
Sopen10g030160 Solanum pennellii HOM05D001537 ORTHO05D002595 5.8e-09 65.5 102 42.2
BcaC04g22810 Brassica carinata HOM05D001537 ORTHO05D002595 7.6e-09 65.1 45 57.8
C09p15070 Brassica napus HOM05D001537 ORTHO05D002595 7.6e-09 65.1 45 57.8
BolC9t54411H Brassica oleracea HOM05D001537 ORTHO05D002595 7.6e-09 65.1 45 57.8
MELO3C017034.2 Cucumis melo HOM05D001537 ORTHO05D002595 1.3e-08 64.3 51 52.9
AL1G33740 Arabidopsis lyrata HOM05D001537 ORTHO05D002595 2.2e-08 63.5 44 59.1
Thhalv10006615m.g Eutrema salsugineum HOM05D001537 ORTHO05D002595 2.2e-08 63.5 91 34.1
A09p12720 Brassica napus HOM05D001537 ORTHO05D002595 2.9e-08 63.2 45 55.6
BraA09t36916Z Brassica rapa HOM05D001537 ORTHO05D002595 2.9e-08 63.2 45 55.6
CARHR021190 Cardamine hirsuta HOM05D001537 ORTHO05D002595 3.8e-08 62.8 87 37.9
Cc00_g25330 Coffea canephora HOM05D001537 ORTHO05D002595 4.9e-08 62.4 110 40.9
Nitab4.5_0004356g0020 Nicotiana tabacum HOM05D001537 ORTHO05D002595 6.4e-08 62.0 86 44.2
Thecc.08G061900 Theobroma cacao HOM05D001537 ORTHO05D002595 6.4e-08 62.0 45 60.0
Thhalv10009302m.g Eutrema salsugineum HOM05D001537 ORTHO05D002595 1.4e-07 60.8 43 55.8
Nitab4.5_0000486g0210 Nicotiana tabacum HOM05D001537 ORTHO05D002595 1.9e-07 60.5 86 43.0
COL.COLO4_07212 Corchorus olitorius HOM05D001537 ORTHO05D002595 5.5e-07 58.9 50 52.0
HanXRQChr06g0185191 Helianthus annuus HOM05D001537 ORTHO05D002595 5.5e-07 58.9 43 55.8
ATR0807G057 Amborella trichopoda HOM05D001537 ORTHO05D002595 3.5e-06 56.2 67 41.8
Gohir.A05G178300 Gossypium hirsutum HOM05D001537 ORTHO05D002595 6.0e-06 55.5 45 53.3
Gohir.D05G181700 Gossypium hirsutum HOM05D001537 ORTHO05D002595 6.0e-06 55.5 45 53.3
Gorai.009G186700 Gossypium raimondii HOM05D001537 ORTHO05D002595 6.0e-06 55.5 45 53.3


User provided reference genes

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